minC:Gene: Difference between revisions

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!align=left {{table_heading_style}} |Standard name
!align=left |Standard name
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''minC''  
''minC''  
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!align=left {{table_heading_style}} |Mnemonic
!align=left |Mnemonic
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!align=left {{table_heading_style}} |Synonyms
!align=left |Synonyms
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''ECK1164, b1176, JW1165, minB''<ref name='LIB:Riley_2006'/>
''ECK1164, b1176, JW1165, minB''<ref name='LIB:Riley_2006'/>


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!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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*[http://biocyc.org/ECOLI/sequence?object=EG10596 EcoCyc Sequence Dump]  
*[http://biocyc.org/ECOLI/sequence?object=EG10596 EcoCyc Sequence Dump]  
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[[REL606]]
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NC_012967: 1225546..1226241<br />{{GBrowseFigureByCoord|1225546|1226241|REL606|NC_012967}}
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{{GBrowseFastaLink|ecoli_DH10B|NC_010473|1263459|1266934|FASTA Dump}}  
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!|Feature type!!Location!!Description
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!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
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reduced interaction with MinD according to 2 hybrid screen  
reduced interaction with MinD according to 2 hybrid screen  


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est. P1 cotransduction: 72% <ref name='LIB:Nichols_linked_Tn'/>  
est. P1 cotransduction: 72% <ref name='LIB:Nichols_linked_Tn'/>  


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Revision as of 02:11, 9 January 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

minC

Mnemonic
Synonyms

ECK1164, b1176, JW1165, minB[1]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

26.39 minutes 

MG1655: 1225303..1224608
gbrowse_img.php?coord=1224608..1225303&genome=ecoli&name=MG1655&trackset=0&width=300&.png

REL606

NC_012967: 1225546..1226241
gbrowse_img.php?coord=1225546..1226241&genome=REL606&name=NC_012967&trackset=0&width=300&.png

W3110

 

W3110: 1227657..1226962
gbrowse_img.php?coord=1226962..1227657&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

DH10B

DH10B: 1265544..1264849
gbrowse_img.php?coord=1264849..1265544&genome=ecoli_DH10B&name=DH10B&trackset=0&width=300&.png

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature type Location Description
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔminC (Keio:JW1165)

deletion

deletion

PMID:16738554[2]

Shigen
CGSC9075[3]

ΔminC765::kan

PMID:16738554[2]

CGSC:101874

ftsK1::cat ΔminB

Growth Phenotype

minicell chains

PMID:9829960[4]

minC28

PMID:8752322[5]

reduced interaction with MinD according to 2 hybrid screen

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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW1165

Plasmid clone

Shigen

PMID:16769691[6]

Status:Clone OK

Primer 1:GCCTCAAACACGCCAATCGAGCT

Primer 2:CCATTTAACGGTTGAACGGTCAA

zcf-117::Tn10

Linked marker

CAG18463 = CGSC7363[3]

est. P1 cotransduction: 62% [7]

fadR13::Tn10

Linked marker

CAG18497 = CGSC7365[3]

est. P1 cotransduction: 72% [7]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10596

EchoBASE (EcoliWiki Page)

EchoBASE:EB0591

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b1176

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C1623

EcoGene (EcoliWiki Page)

EcoGene:EG10596

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:MINC

CGSC (EcoliWiki Page)

CGSC:31329

ASAP (EcoliWikiPage)

ASAP:ABE-0003941


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  3. ↑ 3.0 3.1 3.2 CGSC: The Coli Genetics Stock Center
  4. ↑ Yu, XC et al. (1998) Role of the C terminus of FtsK in Escherichia coli chromosome segregation. J. Bacteriol. 180 6424-8 PubMed
  5. ↑ Huang, J et al. (1996) Interaction between FtsZ and inhibitors of cell division. J. Bacteriol. 178 5080-5 PubMed
  6. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  7. ↑ 7.0 7.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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