trg:Gene: Difference between revisions
imported>Wikientrybot Move help links into the <above> tag inside templates. |
Data loaded by TableEdit_Loader. |
||
| Line 239: | Line 239: | ||
| | | | ||
|- | |||
| | |||
[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0004744 trg] | |||
| | |||
| | |||
| | |||
| | |||
| | |||
PMID:12519969 | |||
| | |||
[[asapstrains:ASAP|ASAP]] | |||
| | |||
At position 509 in Minus orientation, contains plasmid [[pKD46]].<br />ASAP strain name: FB20316 | |||
|-class='sortbottom' | |-class='sortbottom' | ||
Revision as of 23:40, 4 March 2009
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Alleles and Phenotypes | Genetic Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
trg |
|---|---|
| Mnemonic | |
| Synonyms |
ECK1415, b1421, JW1417[1] |
| edit table |
Notes
Location(s) and DNA Sequence
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
MG1655 |
32.12 minutes |
MG1655: 1490494..1492134 |
||
|
W3110 |
|
W3110: 1494184..1495824 |
||
| edit table |
Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature type | Location | Description |
|---|---|---|
| edit table |
Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
Δtrg (Keio:JW1417) |
deletion |
deletion |
|||||
|
trg-2::Tn10 |
Insertion at 1,491,930 bp in MG1655 (NC_000913) |
adapted from Nichols et al.[4] |
Synonyms: | ||||
|
trg-1::Tn5 |
|||||||
|
trg-2::Tn10 |
|||||||
|
trg-3120::Tn10kan |
|||||||
|
Δtrg-782::kan |
|||||||
|
At position 509 in Minus orientation, contains plasmid pKD46. | |||||||
| edit table |
Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
JW1417 |
Plasmid clone |
Status:Clone OK Primer 1:GCCAATACAACTCCCTCACAGCG Primer 2:CCaACCGTAGCGAAACTAACTGG | |
|
Linked marker |
est. P1 cotransduction: 6% [4] | ||
|
Linked marker |
est. P1 cotransduction: 13% [4] | ||
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
References
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
- ↑ 3.0 3.1 3.2 3.3 CGSC: The Coli Genetics Stock Center
- ↑ 4.0 4.1 4.2 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
- ↑ 5.0 5.1 Singer, M et al. (1989) A collection of strains containing genetically linked alternating antibiotic resistance elements for genetic mapping of Escherichia coli. Microbiol. Rev. 53 1-24 PubMed
- ↑ Glasner, JD et al. (2003) ASAP, a systematic annotation package for community analysis of genomes. Nucleic Acids Res. 31 147-51 PubMed
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed