mutH:Gene: Difference between revisions

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!{{table_heading_style}} |Standard name
!align=left {{table_heading_style}} |Standard name
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''mutH''  
''mutH''  
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!{{table_heading_style}} |Mnemonic
!align=left {{table_heading_style}} |Mnemonic
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!{{table_heading_style}} |Synonyms
!align=left {{table_heading_style}} |Synonyms
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''ECK2827, b2831, JW2799, mutR, prv''<ref name='LIB:Riley_2006'/>
''ECK2827, b2831, JW2799, mutR, prv''<ref name='LIB:Riley_2006'/>
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===Notes===
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!Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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MG1655
MG1655
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{{GBrowseFastaLink|ecoli|NC_000913|2967684|2968373|FASTA Dump}}
{{GBrowseFastaLink|ecoli|NC_000913|2967684|2968373|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG10624 EcoCyc Sequence Dump]  
*[http://biocyc.org/ECOLI/sequence?object=EG10624 EcoCyc Sequence Dump]  
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W3110
W3110
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{{GBrowseFastaLink|ecoli_W3110|AC_000091|2968318|2969007|FASTA Dump}}  
{{GBrowseFastaLink|ecoli_W3110|AC_000091|2968318|2969007|FASTA Dump}}  
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|[[PMID:16738554]]<ref name=PMID:16738554/>
[[PMID:16738554]]<ref name=PMID:16738554/>
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[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen]<br>[http://cgsc2.biology.yale.edu/Strain.php?ID=108467 CGSC10186]<ref name='LIB:cgsc'/>  
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen]<br>[http://cgsc2.biology.yale.edu/Strain.php?ID=108467 CGSC10186]<ref name='LIB:cgsc'/>  
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|[[PMID:1092652]]<ref name=PMID:1092652/>
[[PMID:1092652]]<ref name=PMID:1092652/>
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[[cgscmutation:12133|CGSC:12133]]
[[cgscmutation:12133|CGSC:12133]]
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|[[PMID:1649454]]<ref name=PMID:1649454/>
[[PMID:1649454]]<ref name=PMID:1649454/>
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[[cgscmutation:38814|CGSC:38814]]
[[cgscmutation:38814|CGSC:38814]]
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|[[PMID:16738554]]<ref name=PMID:16738554/>
[[PMID:16738554]]<ref name=PMID:16738554/>
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[[cgscmutation:101972|CGSC:101972]]
[[cgscmutation:101972|CGSC:101972]]
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===Notes===
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JW2799
JW2799
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[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
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|[[PMID:16769691]]<ref name=PMID:16769691/>
[[PMID:16769691]]<ref name=PMID:16769691/>


Status:Clone OK
Status:Clone OK
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Primer 2:CCtTGGATCAGAAAATGACGGGC  
Primer 2:CCtTGGATCAGAAAATGACGGGC  
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[[recD:Gene|recD1901::Tn10]]
[[recD:Gene|recD1901::Tn10]]
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est. P1 cotransduction: 55% <ref name='LIB:Nichols_linked_Tn'/>  
est. P1 cotransduction: 55% <ref name='LIB:Nichols_linked_Tn'/>  
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[[speA:Gene|speA210::Tn10]]
[[speA:Gene|speA210::Tn10]]
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CAG12168 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40110 CGSC7431]<ref name='LIB:cgsc'/>
CAG12168 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40110 CGSC7431]<ref name='LIB:cgsc'/>
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est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/>
est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/>nnSynonyms:zgd-210::Tn10, zgf-210::Tn10


Synonyms:zgd-210::Tn10, zgf-210::Tn10
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[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
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[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0009287&formSubmitReturn=1 ASAP:ABE-0009287]
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0009287&formSubmitReturn=1 ASAP:ABE-0009287]
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<noinclude><protect>
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==References==
==References==
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<references/>
<references/>
__NOTOC__
__NOTOC__

Revision as of 21:26, 21 January 2009

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

mutH

Mnemonic
Synonyms

ECK2827, b2831, JW2799, mutR, prv[1]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

63.96 minutes 

MG1655: 2967684..2968373
gbrowse_img.php?coord=2966684..2969373&genome=ecoli&name=MG1655&trackset=0&width=300&.png

W3110

 

W3110: 2968318..2969007
gbrowse_img.php?coord=2967318..2970007&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature type Location Description
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔmutH (Keio:JW2799)

deletion

deletion

PMID:16738554[2]

Shigen
CGSC10186[3]

mutH34

PMID:1092652[4]

CGSC:12133

mutH471::kan

CGSC:30821

mutH472::mini-Tn10

PMID:1649454[5]

CGSC:38814

ΔmutH756::kan

PMID:16738554[2]

CGSC:101972


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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW2799

Plasmid clone

Shigen

PMID:16769691[6]

Status:Clone OK

Primer 1:GCCTCCCAACCTCGCCCACTGCT

Primer 2:CCtTGGATCAGAAAATGACGGGC

recD1901::Tn10

Linked marker

CAG12135 = CGSC7429[3]

est. P1 cotransduction: 55% [7]

speA210::Tn10

Linked marker

CAG12168 = CGSC7431[3]

est. P1 cotransduction: % [7]nnSynonyms:zgd-210::Tn10, zgf-210::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10624

EchoBASE (EcoliWiki Page)

EchoBASE:EB0619

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b2831

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C3426

EcoGene (EcoliWiki Page)

EcoGene:EG10624

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:MUTH

CGSC (EcoliWiki Page)

CGSC:471

ASAP (EcoliWikiPage)

ASAP:ABE-0009287


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Notes

Links

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Name URL Comments
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References

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  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  3. ↑ 3.0 3.1 3.2 CGSC: The Coli Genetics Stock Center
  4. ↑ Hoess, RH & Herman, RK (1975) Isolation and characterization of mutator strains of Escherichia coli K-12. J. Bacteriol. 122 474-84 PubMed
  5. ↑ Michaels, ML et al. (1991) MutM, a protein that prevents G.C----T.A transversions, is formamidopyrimidine-DNA glycosylase. Nucleic Acids Res. 19 3629-32 PubMed
  6. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  7. ↑ 7.0 7.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).


Categories

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