putA:Gene: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
BatchPageAppend.php edit.
touch
 
(29 intermediate revisions by 3 users not shown)
Line 14: Line 14:
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
Line 31: Line 33:
*  
*  
****************************************************************************************** -->{{Gene_nomenclature_help}}
****************************************************************************************** -->{{Gene_nomenclature_help}}
{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  
{|   id="R46a9bdbd44f39" class=" tableEdit Gene_nomenclature_table"


|-
|-
!align=left {{table_heading_style}} |Standard name
!align=left {{table_heading_style}} |Standard name
||
||
''putA''  
''putA''
|-
|-
!align=left {{table_heading_style}} |Mnemonic
!align=left {{table_heading_style}} |Mnemonic
||
||
 
Proline utilization
|-
|-
!align=left {{table_heading_style}} |Synonyms
!align=left {{table_heading_style}} |Synonyms
Line 46: Line 48:
''ECK1005, b1014, JW0999, poaA, putC, proline utilization A''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''ECK1005, b1014, JW0999, poaA, putC, proline utilization A''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.12587.R46a9bdbd44f39&page=12587&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.12587.R46a9bdbd44f39&page=12587&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table]</span> ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.12587.R46a9bdbd44f39-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.12587.R46a9bdbd44f39-->
Line 65: Line 67:
*  
*  
****************************************************************************************** -->{{Gene_location_help}}
****************************************************************************************** -->{{Gene_location_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="U46a9bdbdbde7e"  class=" tableEdit Gene_location_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
Line 74: Line 76:
23.15 minutes&nbsp;
23.15 minutes&nbsp;
|
|
MG1655: 1078105..1074143<br />{{GBrowseFigureByCoord|1073143|1079105|ecoli|MG1655}}
MG1655: 1078105..1074143<br /><gbrowseImage>
name=NC_000913:1074143..1078105
source=MG1655
preset=GeneLocation
</gbrowseImage>
 
|
|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10801 EcoCyc]
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10801 EcoCyc]
{{GBrowseLink|ecoli|NC_000913|1073143|1079105|GBrowse(MG1655)}}
{{GBrowseLink|MG1655|NC_000913|1073143|1079105|GBrowse(MG1655)}}
   
   
|
|
{{GBrowseFastaLink|ecoli|NC_000913|1074143|1078105|FASTA Dump}}
{{GBrowseFastaLink|MG1655|NC_000913|1074143|1078105|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG10801 EcoCyc Sequence Dump]  
*[http://biocyc.org/ECOLI/sequence?object=EG10801 EcoCyc Sequence Dump]  
|-
|
[[REL606]]
|
|
NC_012967: 1095166..1091204<br /><gbrowseImage>
name=NC_012967:1091204..1095166
source=REL606
preset=GeneLocation
</gbrowseImage>
|
{{GBrowseLink|REL606|NC_012967|1091204|1095166|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|1091204|1095166|FASTA Dump}}
|-
|
[[BW2952]]
|
|
NC_012759: 977111..981073<br /><gbrowseImage>
name=NC_012759:977111..981073
source=BW2952
preset=GeneLocation
</gbrowseImage>
|
{{GBrowseLink|BW2952|NC_012759|977111|981073|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|977111|981073|FASTA Dump}}
|-  
|-  
|
|
Line 88: Line 127:
&nbsp;
&nbsp;
|
|
W3110: 1079304..1075342<br />{{GBrowseFigureByCoord|1074342|1080304|ecoli_W3110|W3110}}  
W3110: 1079304..1075342<br /><gbrowseImage>
name=NC_007779:1075342..1079304
source=W3110
preset=GeneLocation
</gbrowseImage>
 
|
{{GBrowseLink|W3110|NC_007779|1074342|1080304|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|NC_007779|1075342|1079304|FASTA Dump}}  
|-
|
[[DH10B]]
|
|
{{GBrowseLink|ecoli_W3110|AC_000091|1074342|1080304|GBrowse(W3110)}}
 
|
|
{{GBrowseFastaLink|ecoli_W3110|AC_000091|1075342|1079304|FASTA Dump}}
DH10B: 1132033..1128071<br /><gbrowseImage>
name=NC_010473:1128071..1132033
source=DH10B
preset=GeneLocation
</gbrowseImage>


|-class='sortbottom'
|
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.12587.U46a9bdbdbde7e&page=12587&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
{{GBrowseLink|DH10B|NC_010473|1120147|1139957|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|1120147|1139957|FASTA Dump}}
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.12587.U46a9bdbdbde7e&page=12587&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table]</span> || || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.12587.U46a9bdbdbde7e-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.12587.U46a9bdbdbde7e-->
Line 112: Line 172:
*  
*  
****************************************************************************************** -->{{Gene_sequence_features_help}}
****************************************************************************************** -->{{Gene_sequence_features_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="W46a9bdbe691c4"  class=" tableEdit Gene_sequence_features_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Feature type!!Location!!Description
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.12587.W46a9bdbe691c4&page=12587&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.12587.W46a9bdbe691c4&page=12587&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table]</span> || || || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.12587.W46a9bdbe691c4-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.12587.W46a9bdbe691c4-->
Line 134: Line 194:
*  
*  
****************************************************************************************** -->{{Gene_alleles_help}}
****************************************************************************************** -->{{Gene_alleles_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" {{Prettytable}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="V46a9bdbea9e57"  class=" tableEdit Gene_allele_table dataTable" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-  
|-  
|
|
&Delta;putA (Keio:JW0999)
''putA(del)'' (Keio:JW0999)
|
|
deletion
deletion
Line 151: Line 211:
PMID:16738554
PMID:16738554
|
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen]<br>[http://cgsc2.biology.yale.edu/Strain.php?ID=107262 CGSC8981]<ref name='LIB:cgsc'/>  
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen]
 
[http://cgsc2.biology.yale.edu/Strain.php?ID=107262 CGSC8981]<ref name='LIB:cgsc'/>  
|
|
   
   
Line 190: Line 252:
|-  
|-  
|
|
''&#916;putA758::kan''
''put(del)A758::kan''
|
|


Line 205: Line 267:
|
|
   
   
|-
|
''putAP(del)101''
|


|-class='sortbottom'
|
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.12587.V46a9bdbea9e57&page=12587&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
 
|
Auxotrophies
|
Proline Auxotroph
|
PMID:6355059
|
Strains: RM2
|
|-
|
''putP putA<sup>  +</sup>''
|
 
|
 
|
Resistant to
|
Dehydroproline resistance
|
PMID:7016835
|
Strain:CSH4
|
table 2
|-
|
''putP putA<sup>  +</sup>''
|
 
|
 
|
Resistant to
|
L-Azetidine-2-carboxylate resistance
|
PMID:7016835
|
Strain:CSH4
|
table 2
|-
|
putP in strain C4
|
 
|
 
|
Resistant to
|
Dehydroproline resistance
|
PMID:4865475
|
Strain: C4
|
Table 1
|-
|
putP in strain C4
|
 
|
 
|
Resistant to
|
L-Azetidine-2-carboxylate resistance
|
PMID:4865475
|
Strain: C4
|
Table 1
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.12587.V46a9bdbea9e57&page=12587&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table]</span> || || || || || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.12587.V46a9bdbea9e57-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.12587.V46a9bdbea9e57-->
Line 214: Line 361:
===Notes===
===Notes===


==Genetic Interactions==
{{BacktoTop}}
<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.12587.J4e04c1d17f8cc-->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->{{Genetic_interaction_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="J4e04c1d17f8cc"  class=" tableEdit Genetic_interaction_table dataTable" 
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.12587.J4e04c1d17f8cc&page=12587&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table]</span> || || || || || ||
|}
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.12587.J4e04c1d17f8cc--></protect>
<!-- Genetic Interacdtions Notes -->
===Notes===


==Genetic Resources==
==Genetic Resources==
Line 224: Line 393:
*  
*  
****************************************************************************************** -->{{Gene_resources_help}}
****************************************************************************************** -->{{Gene_resources_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="N46a9bdbf550d2"  class=" tableEdit Gene_resource_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
!|Resource!!Resource Type!!Source!!Notes/Reference
Line 242: Line 411:


Primer 2:ccACCTATAGTCATTAAGCTGGCGTTACCG  
Primer 2:ccACCTATAGTCATTAAGCTGGCGTTACCG  
|-
|
[[:Category:Kohara_Phage:7B5|7B5]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=228 Genobase]
|
PMID:3038334
|-  
|-  
|
|
Line 261: Line 439:
est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/>  
est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/>  


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.12587.N46a9bdbf550d2&page=12587&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.12587.N46a9bdbf550d2&page=12587&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table]</span> || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.12587.N46a9bdbf550d2-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.12587.N46a9bdbf550d2-->
Line 279: Line 457:
*  
*  
****************************************************************************************** -->{{Gene_accessions_help}}
****************************************************************************************** -->{{Gene_accessions_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="R46a9bdbfdfd74"  class=" tableEdit Gene_accessions_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-  
|-  
|
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
[[EcoCyc]]
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10801 EcoCyc:EG10801]
|
|-
|
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
|
|
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB0794 EchoBASE:EB0794]
EcoCyc:EG10801
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
[[EcoGene]]
|
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b1014 EcoliGenExpDB:b1014]
EcoGene:EG10801
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]])
[[RegulonDB]]
|
|
[http://BioCyc.org/ECOL199310/new-image?object=C1151 ECOL199310CYC:C1151]
RegulonDB:ECK120000792
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
|
[http://ecogene.org/geneinfo.php?eg_id=EG10801 EcoGene:EG10801]
[http://www.ncbi.nlm.nih.gov/gene?term=945600 GeneID:945600]
|
|
Escherichia coli str. K-12 substr. MG1655
|-  
|-  
|
|
[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])
[[EchoBASE]]
|
|
[http://BioCyc.org/ECOO157/new-image?object=PUTA ECOO157CYC:PUTA]
EchoBASE:EB0794
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[http://cgsc.biology.yale.edu CGSC] ([[CGSC|EcoliWiki Page]])
[[ASAP]]
|
|
[http://cgsc.biology.yale.edu/cgi-bin/sybgw/cgsc/Site/333 CGSC:333]
ASAP:ABE-0003424
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]  
|-  
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0003424&formSubmitReturn=1 ASAP:ABE-0003424]
|


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.12587.R46a9bdbfdfd74&page=12587&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.12587.R46a9bdbfdfd74&page=12587&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.12587.R46a9bdbfdfd74-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.12587.R46a9bdbfdfd74-->
Line 357: Line 521:
*  
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="G46a6db25e1eae"  class=" tableEdit Links_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Name!!URL!!Comments
!|Name!!URL!!Comments


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.12587.G46a6db25e1eae&page=12587&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.12587.G46a6db25e1eae&page=12587&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.12587.G46a6db25e1eae-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.12587.G46a6db25e1eae-->
Line 370: Line 534:
==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
 
{{RefHelp}}
<references/>
<references />
__NOTOC__
__NOTOC__
</protect></noinclude>
===Categories===
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:MG1655]]
Line 379: Line 542:
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:put genes]][[Category:Gene_List:DH10B]]
[[Category:put genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

Latest revision as of 20:31, 19 September 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

[back to top]


See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

putA

Mnemonic

Proline utilization

Synonyms

ECK1005, b1014, JW0999, poaA, putC, proline utilization A[1][2]

edit table


Notes

Location(s) and DNA Sequence

[back to top]


See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

23.15 minutes 

MG1655: 1078105..1074143
<gbrowseImage> name=NC_000913:1074143..1078105 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 1095166..1091204
<gbrowseImage> name=NC_012967:1091204..1095166 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 977111..981073
<gbrowseImage> name=NC_012759:977111..981073 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 1079304..1075342
<gbrowseImage> name=NC_007779:1075342..1079304 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 1132033..1128071
<gbrowseImage> name=NC_010473:1128071..1132033 source=DH10B preset=GeneLocation </gbrowseImage>

edit table


Notes

Sequence Features

[back to top]


See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
edit table


Notes

Alleles and Phenotypes

[back to top]


See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

putA(del) (Keio:JW0999)

deletion

deletion

PMID:16738554[3]

Shigen

CGSC8981[4]

putA11

CGSC:12047

putA1::Tn5

PMID:7016835[5]

CGSC:89583

put(del)A758::kan

PMID:16738554[3]

CGSC:102550

putAP(del)101

Auxotrophies

Proline Auxotroph

PMID:6355059[6]

Strains: RM2

putP putA +

Resistant to

Dehydroproline resistance

PMID:7016835[5]

Strain:CSH4

table 2

putP putA +

Resistant to

L-Azetidine-2-carboxylate resistance

PMID:7016835[5]

Strain:CSH4

table 2

putP in strain C4

Resistant to

Dehydroproline resistance

PMID:4865475[7]

Strain: C4

Table 1

putP in strain C4

Resistant to

L-Azetidine-2-carboxylate resistance

PMID:4865475[7]

Strain: C4

Table 1

edit table


Notes

Genetic Interactions

[back to top]



Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
edit table


Notes

Genetic Resources

[back to top]


See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW0999

Plasmid clone

Shigen

PMID:16769691[8]

Status:Clone OK

Primer 1:gccGGAACCACCACCATGGGGGTTAAGCTG

Primer 2:ccACCTATAGTCATTAAGCTGGCGTTACCG

7B5

Kohara Phage

Genobase

PMID:3038334[9]

zcc-282::Tn10

Linked marker

CAG18466 = CGSC7359[4]

est. P1 cotransduction: 67% [10]

zce-726::Tn10

Linked marker

CAG12078 = CGSC7361[4]

est. P1 cotransduction: % [10]

edit table


Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10801

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10801

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000792

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:945600

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0794

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003424

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

[back to top]



<protect>

References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  4. ↑ 4.0 4.1 4.2 CGSC: The Coli Genetics Stock Center
  5. ↑ 5.0 5.1 5.2 Wood, JM (1981) Genetics of L-proline utilization in Escherichia coli. J. Bacteriol. 146 895-901 PubMed
  6. ↑ Stalmach, ME et al. (1983) Two proline porters in Escherichia coli K-12. J. Bacteriol. 156 481-6 PubMed
  7. ↑ 7.0 7.1 Tristram, H & Neale, S (1968) The activity and specificity of the proline permease in wild-type and analogue-resistant strains of Escherichia coli. J. Gen. Microbiol. 50 121-37 PubMed
  8. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  9. ↑ Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
  10. ↑ 10.0 10.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=putA:Gene&oldid=1476716"