mutM:Gene: Difference between revisions

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|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
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*  
*  
****************************************************************************************** -->{{Gene_nomenclature_help}}
****************************************************************************************** -->{{Gene_nomenclature_help}}
{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  
{|   id="M46a9faf5b6712" class=" tableEdit Gene_nomenclature_table"


|-
|-
!align=left {{table_heading_style}} |Standard name
!align=left {{table_heading_style}} |Standard name
||
||
''mutM''  
''mutM''
|-
|-
!align=left {{table_heading_style}} |Mnemonic
!align=left {{table_heading_style}} |Mnemonic
||
||
 
Mutator
|-
|-
!align=left {{table_heading_style}} |Synonyms
!align=left {{table_heading_style}} |Synonyms
||
||
''ECK3625, b3635, JW3610, fpg''<ref name='LIB:Riley_2006'/>
''ECK3625, b3635, JW3610, fpg''<ref name='LIB:Riley_2006'/>, fpg''


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*  
*  
****************************************************************************************** -->{{Gene_location_help}}
****************************************************************************************** -->{{Gene_location_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="W46a9faf6442de"  class=" tableEdit Gene_location_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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82.08 minutes&nbsp;
82.08 minutes&nbsp;
|
|
MG1655: 3809175..3808366<br />{{GBrowseFigureByCoord|3807366|3810175|ecoli|MG1655}}
MG1655: 3809175..3808366<br /><gbrowseImage>
name=NC_000913:3808366..3809175
source=MG1655
preset=GeneLocation
</gbrowseImage>
 
|
|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10329 EcoCyc]
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10329 EcoCyc]
{{GBrowseLink|ecoli|NC_000913|3807366|3810175|GBrowse(MG1655)}}
{{GBrowseLink|MG1655|NC_000913|3807366|3810175|GBrowse(MG1655)}}
   
   
|
|
{{GBrowseFastaLink|ecoli|NC_000913|3808366|3809175|FASTA Dump}}
{{GBrowseFastaLink|MG1655|NC_000913|3808366|3809175|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG10329 EcoCyc Sequence Dump]  
*[http://biocyc.org/ECOLI/sequence?object=EG10329 EcoCyc Sequence Dump]  
|-
|
[[REL606]]
|
|
NC_012967: 3749507..3748698<br /><gbrowseImage>
name=NC_012967:3748698..3749507
source=REL606
preset=GeneLocation
</gbrowseImage>
|
{{GBrowseLink|REL606|NC_012967|3748698|3749507|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|3748698|3749507|FASTA Dump}}
|-
|
[[BW2952]]
|
|
NC_012759: 3696692..3697501<br /><gbrowseImage>
name=NC_012759:3696692..3697501
source=BW2952
preset=GeneLocation
</gbrowseImage>
|
{{GBrowseLink|BW2952|NC_012759|3696692|3697501|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|3696692|3697501|FASTA Dump}}
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&nbsp;
&nbsp;
|
|
W3110: 3829263..3830072<br />{{GBrowseFigureByCoord|3828263|3831072|ecoli_W3110|W3110}}  
W3110: 3829263..3830072<br /><gbrowseImage>
name=NC_007779:3829263..3830072
source=W3110
preset=GeneLocation
</gbrowseImage>
 
|
{{GBrowseLink|W3110|NC_007779|3828263|3831072|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|NC_007779|3829263|3830072|FASTA Dump}}  
|-
|
|
{{GBrowseLink|ecoli_W3110|AC_000091|3828263|3831072|GBrowse(W3110)}}
[[DH10B]]
|
|
{{GBrowseFastaLink|ecoli_W3110|AC_000091|3829263|3830072|FASTA Dump}}


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DH10B: 3906752..3905943<br /><gbrowseImage>
name=NC_010473:3905943..3906752
source=DH10B
preset=GeneLocation
</gbrowseImage>
 
|
{{GBrowseLink|DH10B|NC_010473|3904325|3908370|GBrowse(DH10B)}}
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{{GBrowseFastaLink|DH10B|NC_010473|3904325|3908370|FASTA Dump}}
 
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*  
*  
****************************************************************************************** -->{{Gene_sequence_features_help}}
****************************************************************************************** -->{{Gene_sequence_features_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="P46a9faf70754f"  class=" tableEdit Gene_sequence_features_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Feature type!!Location!!Description
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
|-
|
Coding Start (SO:0000323)
|
[[MG1655]]
|
3808369
|
Edman degradation
|
PMID:3319582<br />
|


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*  
*  
****************************************************************************************** -->{{Gene_alleles_help}}
****************************************************************************************** -->{{Gene_alleles_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" {{Prettytable}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="D46a9faf750eaf"  class=" tableEdit Gene_allele_table dataTable" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-  
|-  
|
|
&Delta;mutM (Keio:JW3610)
''mutM(del)'' (Keio:JW3610)
|
|
deletion
deletion
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|
|


|[[PMID:16738554]]<ref name=PMID:16738554/>
|
PMID:16738554
|
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen]
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen]
|
|
   
   
|-
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0011877 mutM::Tn5KAN-I-SceI] (FB21352)
|
Insertion at nt 312 in Plus orientation
|
|
|
|
PMID:15262929
|
[http://www.genome.wisc.edu/resources/forms/strainrequest.htm E. coli Genome Project:FB21352]
|
contains [[pKD46]]
|-
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0011877 mutM::Tn5KAN-I-SceI] (FB21353)
|
Insertion at nt 312 in Plus orientation
|
|
|
|
PMID:15262929
|
[http://www.genome.wisc.edu/resources/forms/strainrequest.htm E. coli Genome Project:FB21353]
|
does not contain [[pKD46]]
|-
|
mutMK218T
|
|
K218T
|
|
Slight increase of substrate affinity and decrease of activity
|
|
|
seeded from [http://www.uniprot.org/uniprot/P05523 UniProt:P05523]
|-
|
mutME174Q
|
|
E174Q
|
|
Strong decrease of glycosylase activity; slight decrease of AP lyase activity
|
|
|
seeded from [http://www.uniprot.org/uniprot/P05523 UniProt:P05523]
|-
|
mutME3Q
|
|
E3Q
|
|
Strong decrease of glycosylase activity; slight decrease of AP lyase activity
|
|
|
seeded from [http://www.uniprot.org/uniprot/P05523 UniProt:P05523]
|-
|
mutME6Q
|
|
E6Q
|
|
Decrease of glycosylase activity; no effect on AP lyase activity
|
|
|
seeded from [http://www.uniprot.org/uniprot/P05523 UniProt:P05523]
|-
|
mutMH90A
|
|
H90A
|
|
Increase of substrate affinity and decrease of activity
|
|
|
seeded from [http://www.uniprot.org/uniprot/P05523 UniProt:P05523]
|-
|
mutMD107N
|
|
D107N
|
|
No effect on glycosylase and AP lyase activity
|
|
|
seeded from [http://www.uniprot.org/uniprot/P05523 UniProt:P05523]
|-
|
mutMR109A
|
|
R109A
|
|
Over 100-fold decrease of activity
|
|
|
seeded from [http://www.uniprot.org/uniprot/P05523 UniProt:P05523]
|-
|
mutMR110A
|
|
R110A
|
|
Over 100-fold increase of substrate affinity and decrease of activity
|
|
|
seeded from [http://www.uniprot.org/uniprot/P05523 UniProt:P05523]
|-
|
mutME132Q
|
|
E132Q
|
|
Decrease of glycosylase activity; slight decrease of AP lyase activity
|
|
|
seeded from [http://www.uniprot.org/uniprot/P05523 UniProt:P05523]
|-
|
mutMD160N
|
|
D160N
|
|
No effect on glycosylase and AP lyase activity
|
|
|
seeded from [http://www.uniprot.org/uniprot/P05523 UniProt:P05523]
|-  
|-  
|
|
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|
|


|[[PMID:8676878]]<ref name=PMID:8676878/>
|
PMID:8676878
|
|
[[cgscmutation:67990|CGSC:67990]]
[[cgscmutation:67990|CGSC:67990]]
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|
|


|[[PMID:8676878]]<ref name=PMID:8676878/>
|
PMID:8676878
|
|
[[cgscmutation:67993|CGSC:67993]]
[[cgscmutation:67993|CGSC:67993]]
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===Notes===
===Notes===


==Genetic Interactions==
{{BacktoTop}}
<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.17825.P4e04bfc99420f-->
<!--
******************************************************************************************
*
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="P4e04bfc99420f"  class=" tableEdit Genetic_interaction_table dataTable" 
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.17825.P4e04bfc99420f&page=17825&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table]</span> || || || || || ||
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<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.17825.P4e04bfc99420f--></protect>
<!-- Genetic Interacdtions Notes -->
===Notes===


==Genetic Resources==
==Genetic Resources==
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****************************************************************************************** -->{{Gene_resources_help}}
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="G46a9faf813d25"  class=" tableEdit Gene_resource_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
!|Resource!!Resource Type!!Source!!Notes/Reference
Line 214: Line 516:
|
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|[[PMID:16769691]]<ref name=PMID:16769691/>
|
PMID:16769691


Status:Clone OK
Status:Clone OK
Line 221: Line 524:


Primer 2:CCtTTCTGGCACTGCCGACAATA  
Primer 2:CCtTTCTGGCACTGCCGACAATA  
|-
|
[[:Category:Kohara_Phage:2A6|2A6]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=572 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:4D2|4D2]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=573 Genobase]
|
PMID:3038334
|-  
|-  
|
|
Line 229: Line 550:
CAG18450 = [http://cgsc2.biology.yale.edu/Strain.php?ID=37863 CGSC7450]<ref name='LIB:cgsc'/>
CAG18450 = [http://cgsc2.biology.yale.edu/Strain.php?ID=37863 CGSC7450]<ref name='LIB:cgsc'/>
|
|
est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/>nnSynonyms:zhf-50::Tn10, zhf-5::Tn10  
est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/> <br />
Synonyms:zhf-50::Tn10, zhf-5::Tn10  
|-  
|-  
|
|
Line 240: Line 562:
est. P1 cotransduction: 50% <ref name='LIB:Nichols_linked_Tn'/>  
est. P1 cotransduction: 50% <ref name='LIB:Nichols_linked_Tn'/>  


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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Z46a9faf8b2763"  class=" tableEdit Gene_accessions_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-  
|-  
|
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
[[EcoCyc]]
|
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10329 EcoCyc:EG10329]
EcoCyc:EG10329
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
[[EcoGene]]
|
|
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB0325 EchoBASE:EB0325]
EcoGene:EG10329
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
[[RegulonDB]]
|
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b3635 EcoliGenExpDB:b3635]
RegulonDB:ECK120000323
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
|
[http://BioCyc.org/ECOL199310/new-image?object=C4459 ECOL199310CYC:C4459]
[http://www.ncbi.nlm.nih.gov/gene?term=946765 GeneID:946765]
|
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG10329 EcoGene:EG10329]
|
|-  
|
[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])
|
[http://BioCyc.org/ECOO157/new-image?object=MUTM ECOO157CYC:MUTM]
|
|-  
|-  
|
|
[http://cgsc.biology.yale.edu CGSC] ([[CGSC|EcoliWiki Page]])
[[EchoBASE]]
|
|
[http://cgsc.biology.yale.edu/cgi-bin/sybgw/cgsc/Site/18133 CGSC:18133]
EchoBASE:EB0325
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
[[ASAP]]
|
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0011877&formSubmitReturn=1 ASAP:ABE-0011877]
ASAP:ABE-0011877
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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==References==
==References==
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===Categories===
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:MG1655]]
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[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:mut genes]]
[[Category:mut genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

Latest revision as of 20:48, 19 September 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

mutM

Mnemonic

Mutator

Synonyms

ECK3625, b3635, JW3610, fpg[1], fpg

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

82.08 minutes 

MG1655: 3809175..3808366
<gbrowseImage> name=NC_000913:3808366..3809175 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 3749507..3748698
<gbrowseImage> name=NC_012967:3748698..3749507 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 3696692..3697501
<gbrowseImage> name=NC_012759:3696692..3697501 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 3829263..3830072
<gbrowseImage> name=NC_007779:3829263..3830072 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 3906752..3905943
<gbrowseImage> name=NC_010473:3905943..3906752 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

3808369

Edman degradation

PMID:3319582[2]


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

mutM(del) (Keio:JW3610)

deletion

deletion

PMID:16738554[3]

Shigen

mutM::Tn5KAN-I-SceI (FB21352)

Insertion at nt 312 in Plus orientation

PMID:15262929[4]

E. coli Genome Project:FB21352

contains pKD46

mutM::Tn5KAN-I-SceI (FB21353)

Insertion at nt 312 in Plus orientation

PMID:15262929[4]

E. coli Genome Project:FB21353

does not contain pKD46

mutMK218T

K218T

Slight increase of substrate affinity and decrease of activity

seeded from UniProt:P05523

mutME174Q

E174Q

Strong decrease of glycosylase activity; slight decrease of AP lyase activity

seeded from UniProt:P05523

mutME3Q

E3Q

Strong decrease of glycosylase activity; slight decrease of AP lyase activity

seeded from UniProt:P05523

mutME6Q

E6Q

Decrease of glycosylase activity; no effect on AP lyase activity

seeded from UniProt:P05523

mutMH90A

H90A

Increase of substrate affinity and decrease of activity

seeded from UniProt:P05523

mutMD107N

D107N

No effect on glycosylase and AP lyase activity

seeded from UniProt:P05523

mutMR109A

R109A

Over 100-fold decrease of activity

seeded from UniProt:P05523

mutMR110A

R110A

Over 100-fold increase of substrate affinity and decrease of activity

seeded from UniProt:P05523

mutME132Q

E132Q

Decrease of glycosylase activity; slight decrease of AP lyase activity

seeded from UniProt:P05523

mutMD160N

D160N

No effect on glycosylase and AP lyase activity

seeded from UniProt:P05523

mutM102::kan

PMID:8676878[5]

CGSC:67990

mutM103::mini-Tn10

PMID:8676878[5]

CGSC:67993


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW3610

Plasmid clone

Shigen

PMID:16769691[6]

Status:Clone OK

Primer 1:GCCCCTGAATTACCCGAAGTTGA

Primer 2:CCtTTCTGGCACTGCCGACAATA

2A6

Kohara Phage

Genobase

PMID:3038334[7]

4D2

Kohara Phage

Genobase

PMID:3038334[7]

zhg-50::Tn10

Linked marker

CAG18450 = CGSC7450[8]

est. P1 cotransduction: % [9]
Synonyms:zhf-50::Tn10, zhf-5::Tn10

zic-4901::Tn10

Linked marker

CAG18492 = CGSC7457[8]

est. P1 cotransduction: 50% [9]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10329

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10329

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000323

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:946765

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0325

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011877

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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<protect>

References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ Boiteux, S et al. (1987) Formamidopyrimidine-DNA glycosylase of Escherichia coli: cloning and sequencing of the fpg structural gene and overproduction of the protein. EMBO J. 6 3177-83 PubMed
  3. ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  4. ↑ 4.0 4.1 Kang, Y et al. (2004) Systematic mutagenesis of the Escherichia coli genome. J. Bacteriol. 186 4921-30 PubMed
  5. ↑ 5.0 5.1 Bridges, BA et al. (1996) Effect of mutY and mutM/fpg-1 mutations on starvation-associated mutation in Escherichia coli: implications for the role of 7,8-dihydro-8-oxoguanine. Mol. Gen. Genet. 251 352-7 PubMed
  6. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  7. ↑ 7.0 7.1 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
  8. ↑ 8.0 8.1 CGSC: The Coli Genetics Stock Center
  9. ↑ 9.0 9.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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