poxB:Gene: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
Data loaded by TableEdit_Loader.
touch
 
(25 intermediate revisions by 2 users not shown)
Line 14: Line 14:
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
Line 31: Line 33:
*  
*  
****************************************************************************************** -->{{Gene_nomenclature_help}}
****************************************************************************************** -->{{Gene_nomenclature_help}}
{| id="N46a9ba93b1bb4"  class=" tableEdit Gene_nomenclature_table"   
{|   id="N46a9ba93b1bb4"  class=" tableEdit Gene_nomenclature_table"   


|-
|-
!align=left {{table_heading_style}} |Standard name
!align=left {{table_heading_style}} |Standard name
||
||
''poxB''  
''poxB''
|-
|-
!align=left {{table_heading_style}} |Mnemonic
!align=left {{table_heading_style}} |Mnemonic
||
||
 
Pyruvate oxidase
|-
|-
!align=left {{table_heading_style}} |Synonyms
!align=left {{table_heading_style}} |Synonyms
||
||
''ECK0862, b0871, JW0855''<ref name='LIB:Riley_2006'/>
''ECK0862, b0871, JW0855''<ref name='LIB:Riley_2006'/>, JW0855''


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  
Line 65: Line 67:
*  
*  
****************************************************************************************** -->{{Gene_location_help}}
****************************************************************************************** -->{{Gene_location_help}}
{|   id="Z46a9ba9435a7a"  class=" tableEdit Gene_location_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Z46a9ba9435a7a"  class=" tableEdit Gene_location_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
Line 74: Line 76:
19.58 minutes&nbsp;
19.58 minutes&nbsp;
|
|
MG1655: 910272..908554<br />{{GBrowseFigureByCoord|908554|910272|ecoli|MG1655}}
MG1655: 910272..908554<br /><gbrowseImage>
name=NC_000913:908554..910272
source=MG1655
preset=GeneLocation
</gbrowseImage>
 
|
|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10754 EcoCyc]
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10754 EcoCyc]
{{GBrowseLink|ecoli|NC_000913|907554|911272|GBrowse(MG1655)}}
{{GBrowseLink|MG1655|NC_000913|907554|911272|GBrowse(MG1655)}}
   
   
|
|
{{GBrowseFastaLink|ecoli|NC_000913|908554|910272|FASTA Dump}}
{{GBrowseFastaLink|MG1655|NC_000913|908554|910272|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG10754 EcoCyc Sequence Dump]  
*[http://biocyc.org/ECOLI/sequence?object=EG10754 EcoCyc Sequence Dump]  
|-  
|-  
Line 88: Line 95:


|
|
NC_012967: 927756..926038<br />{{GBrowseFigureByCoord|926038|927756|REL606|NC_012967}}
NC_012967: 927756..926038<br /><gbrowseImage>
name=NC_012967:926038..927756
source=REL606
preset=GeneLocation
</gbrowseImage>
 
|
|
{{GBrowseLink|REL606|NC_012967|926038|927756|GBrowse (REL606)}}
{{GBrowseLink|REL606|NC_012967|926038|927756|GBrowse (REL606)}}
|
|
{{GBrowseFastaLink|REL606|NC_012967|926038|927756|FASTA Dump}}  
{{GBrowseFastaLink|REL606|NC_012967|926038|927756|FASTA Dump}}  
|-
|
[[BW2952]]
|
|
NC_012759: 811522..813240<br /><gbrowseImage>
name=NC_012759:811522..813240
source=BW2952
preset=GeneLocation
</gbrowseImage>
|
{{GBrowseLink|BW2952|NC_012759|811522|813240|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|811522|813240|FASTA Dump}}
|-  
|-  
|
|
Line 99: Line 127:
&nbsp;
&nbsp;
|
|
W3110: 911471..909753<br />{{GBrowseFigureByCoord|909753|911471|ecoli_W3110|W3110}}
W3110: 911471..909753<br /><gbrowseImage>
name=NC_007779:909753..911471
source=W3110
preset=GeneLocation
</gbrowseImage>
 
|
|
{{GBrowseLink|ecoli_W3110|AC_000091|908753|912471|GBrowse(W3110)}}  
{{GBrowseLink|W3110|NC_007779|908753|912471|GBrowse(W3110)}}  
|
|
{{GBrowseFastaLink|ecoli_W3110|AC_000091|909753|911471|FASTA Dump}}  
{{GBrowseFastaLink|W3110|NC_007779|909753|911471|FASTA Dump}}  
|-  
|-  
|
|
Line 110: Line 143:


|
|
DH10B: 964200..962482<br />{{GBrowseFigureByCoord|962482|964200|ecoli_DH10B|DH10B}}
DH10B: 964200..962482<br /><gbrowseImage>
name=NC_010473:962482..964200
source=DH10B
preset=GeneLocation
</gbrowseImage>
 
|
|
{{GBrowseLink|ecoli_DH10B|NC_010473|959046|967636|GBrowse(DH10B)}}
{{GBrowseLink|DH10B|NC_010473|959046|967636|GBrowse(DH10B)}}
|
|
{{GBrowseFastaLink|ecoli_DH10B|NC_010473|959046|967636|FASTA Dump}}  
{{GBrowseFastaLink|DH10B|NC_010473|959046|967636|FASTA Dump}}  


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  
Line 134: Line 172:
*  
*  
****************************************************************************************** -->{{Gene_sequence_features_help}}
****************************************************************************************** -->{{Gene_sequence_features_help}}
{|   id="K46a9ba94d35f8"  class=" tableEdit Gene_sequence_features_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="K46a9ba94d35f8"  class=" tableEdit Gene_sequence_features_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Feature type!!Location!!Description
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
|-
|
Coding Start (SO:0000323)
|
[[MG1655]]
|
908554
|
Edman degradation
|
PMID:3902830<br />
|


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.12301.K46a9ba94d35f8&page=12301&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table]</span> || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.12301.K46a9ba94d35f8&page=12301&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table]</span> || || || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.12301.K46a9ba94d35f8-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.12301.K46a9ba94d35f8-->
Line 156: Line 207:
*  
*  
****************************************************************************************** -->{{Gene_alleles_help}}
****************************************************************************************** -->{{Gene_alleles_help}}
{| {{Prettytable}} id="I46a9ba951f8b9"  class=" tableEdit Gene_allele_table dataTable"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="I46a9ba951f8b9"  class=" tableEdit Gene_allele_table dataTable"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
Line 227: Line 278:
|
|
Deletion  
Deletion  
|-
|
poxBE564P
|
|
E564P
|
|
In poxB16; loss of activity
|
|
|
seeded from [http://www.uniprot.org/uniprot/P07003 UniProt:P07003]
|-
|
poxB
|
|
|
|
|
|
|
Deletion
|-
|
poxBR572G
|
|
R572G
|
|
In poxB10; reduced activity; may interact less with membranes
|
|
|
seeded from [http://www.uniprot.org/uniprot/P07003 UniProt:P07003]
|-  
|-  
|
|
Line 263: Line 365:
|-  
|-  
|
|
''poxB11''
&Delta;poxB::kan
|
deletion
|
|


|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|b-Methyl-D-glucoside]]
|
PMID:16095938
|
|


|
|-
|
&Delta;poxB::kan
|
deletion
|
|


|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|Acetate]]
|
PMID:16095938
|
|


|
|-
|
&Delta;poxB::kan
|
deletion
|
|


|
|
[[cgscmutation:10582|CGSC:10582]]
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|a-Hydroxybutyrate]]
|
PMID:16095938
|
 
|
|
   
   
|-  
|-  
|
|
''poxB14::kan''
&Delta;poxB::kan
|
deletion
|
 
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|a-Ketobutyrate]]
|
PMID:16095938
|
|


|
|-
|
&Delta;poxB::kan
|
deletion
|
|


|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|a-Ketoglutarate]]
|
PMID:16095938
|
|


|
|-
|
&Delta;poxB::kan
|
deletion
|
|


|
|
PMID:3045082
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|Bromosuccinate]]
|
PMID:16095938
|
|
[[cgscmutation:64804|CGSC:64804]]
 
|
|
   
   
|-  
|-  
|
|
''poxB15::lacZ::CmR''
''poxB11''
|
|


Line 307: Line 477:


|
|
PMID:8022274
 
|
|
[[cgscmutation:64823|CGSC:64823]]
[[cgscmutation:10582|CGSC:10582]]
|
|
   
   
|-  
|-  
|
|
''&#916;poxB772::kan''
''poxB14::kan''
|
|


Line 324: Line 494:


|
|
PMID:16738554
PMID:3045082
|
|
[[cgscmutation:102414|CGSC:102414]]
[[cgscmutation:64804|CGSC:64804]]
|
|
   
   
|-  
|-  
|
|
poxBE564P
''poxB15::lacZ::CmR''
|
 
|
 
|
 
|
|


|
|
E564P
PMID:8022274
|
[[cgscmutation:64823|CGSC:64823]]
|
|-
|
''&#916;poxB772::kan''
|
|


|
|
In poxB16; loss of activity
 
|
|


Line 345: Line 528:


|
|
seeded from [http://www.uniprot.org/uniprot/P07003 UniProt:P07003]  
PMID:16738554
|
[[cgscmutation:102414|CGSC:102414]]
|


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  
Line 355: Line 542:
===Notes===
===Notes===


==Genetic Interactions==
{{BacktoTop}}
<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.12301.R4e04c14e4c5d4-->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->{{Genetic_interaction_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="R4e04c14e4c5d4"  class=" tableEdit Genetic_interaction_table dataTable" 
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.12301.R4e04c14e4c5d4&page=12301&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table]</span> || || || || || ||
|}
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.12301.R4e04c14e4c5d4--></protect>
<!-- Genetic Interacdtions Notes -->
===Notes===


==Genetic Resources==
==Genetic Resources==
Line 365: Line 574:
*  
*  
****************************************************************************************** -->{{Gene_resources_help}}
****************************************************************************************** -->{{Gene_resources_help}}
{|   id="Z46a9ba95bd503"  class=" tableEdit Gene_resource_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Z46a9ba95bd503"  class=" tableEdit Gene_resource_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
!|Resource!!Resource Type!!Source!!Notes/Reference
Line 383: Line 592:


Primer 2:CCCCTTAGCCAGTTTGTTTTCGC  
Primer 2:CCCCTTAGCCAGTTTGTTTTCGC  
|-
|
[[:Category:Kohara_Phage:14H6|14H6]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=211 Genobase]
|
PMID:3038334
|-  
|-  
|
|
Line 422: Line 640:
*  
*  
****************************************************************************************** -->{{Gene_accessions_help}}
****************************************************************************************** -->{{Gene_accessions_help}}
{|   id="Q46a9ba9652ce1"  class=" tableEdit Gene_accessions_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Q46a9ba9652ce1"  class=" tableEdit Gene_accessions_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-  
|-  
|
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
[[EcoCyc]]
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10754 EcoCyc:EG10754]
|
|-
|
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
|
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB0747 EchoBASE:EB0747]
|
|-
|
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
|
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b0871 EcoliGenExpDB:b0871]
EcoCyc:EG10754
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]])
[[EcoGene]]
|
|
[http://BioCyc.org/ECOL199310/new-image?object=C1004 ECOL199310CYC:C1004]
EcoGene:EG10754
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
[[RegulonDB]]
|
|
[http://ecogene.org/geneinfo.php?eg_id=EG10754 EcoGene:EG10754]
RegulonDB:ECK120000745
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
|
[http://BioCyc.org/ECOO157/new-image?object=POXB ECOO157CYC:POXB]
[http://www.ncbi.nlm.nih.gov/gene?term=946132 GeneID:946132]
|
|
Escherichia coli str. K-12 substr. MG1655
|-  
|-  
|
|
[http://cgsc.biology.yale.edu CGSC] ([[CGSC|EcoliWiki Page]])
[[EchoBASE]]
|
|
[http://cgsc.biology.yale.edu/cgi-bin/sybgw/cgsc/Site/369 CGSC:369]
EchoBASE:EB0747
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
[[ASAP]]
|
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0002958&formSubmitReturn=1 ASAP:ABE-0002958]
ASAP:ABE-0002958
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  
Line 500: Line 704:
*  
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|   id="Q46a6d7e7aae74"  class=" tableEdit Links_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Q46a6d7e7aae74"  class=" tableEdit Links_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Name!!URL!!Comments
!|Name!!URL!!Comments
Line 522: Line 726:
[[Category:Genes in the ASKA clone collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:pox genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:pox genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

Latest revision as of 20:33, 19 September 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

[back to top]


See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

poxB

Mnemonic

Pyruvate oxidase

Synonyms

ECK0862, b0871, JW0855[1], JW0855

edit table


Notes

Location(s) and DNA Sequence

[back to top]


See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

19.58 minutes 

MG1655: 910272..908554
<gbrowseImage> name=NC_000913:908554..910272 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 927756..926038
<gbrowseImage> name=NC_012967:926038..927756 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 811522..813240
<gbrowseImage> name=NC_012759:811522..813240 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 911471..909753
<gbrowseImage> name=NC_007779:909753..911471 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 964200..962482
<gbrowseImage> name=NC_010473:962482..964200 source=DH10B preset=GeneLocation </gbrowseImage>

edit table


Notes

Sequence Features

[back to top]


See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

908554

Edman degradation

PMID:3902830[2]


edit table


Notes

Alleles and Phenotypes

[back to top]


See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔpoxB (Keio:JW0855)

deletion

deletion

PMID:16738554[3]

Shigen
CGSC8889[4]

poxBA553V

A553V

In poxB14

seeded from UniProt:P07003

poxBD560P

D560P

In poxB15; normal activity

seeded from UniProt:P07003

poxB

Deletion

poxBE564P

E564P

In poxB16; loss of activity

seeded from UniProt:P07003

poxB

Deletion

poxBR572G

R572G

In poxB10; reduced activity; may interact less with membranes

seeded from UniProt:P07003

poxBA533T

A533T

In poxB11

seeded from UniProt:P07003

poxB

Deletion

ΔpoxB::kan

deletion

Biolog:respiration

unable to respire b-Methyl-D-glucoside

PMID:16095938[5]

ΔpoxB::kan

deletion

Biolog:respiration

unable to respire Acetate

PMID:16095938[5]

ΔpoxB::kan

deletion

Biolog:respiration

unable to respire a-Hydroxybutyrate

PMID:16095938[5]

ΔpoxB::kan

deletion

Biolog:respiration

unable to respire a-Ketobutyrate

PMID:16095938[5]

ΔpoxB::kan

deletion

Biolog:respiration

unable to respire a-Ketoglutarate

PMID:16095938[5]

ΔpoxB::kan

deletion

Biolog:respiration

unable to respire Bromosuccinate

PMID:16095938[5]

poxB11

CGSC:10582

poxB14::kan

PMID:3045082[6]

CGSC:64804

poxB15::lacZ::CmR

PMID:8022274[7]

CGSC:64823

ΔpoxB772::kan

PMID:16738554[3]

CGSC:102414


edit table


Notes

Genetic Interactions

[back to top]



Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
edit table


Notes

Genetic Resources

[back to top]


See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW0855

Plasmid clone

Shigen

PMID:16769691[8]

Status:Clone OK

Primer 1:GCCAAACAAACGGTTGCAGCTTA

Primer 2:CCCCTTAGCCAGTTTGTTTTCGC

14H6

Kohara Phage

Genobase

PMID:3038334[9]

zbh-29::Tn10

Linked marker

CAG18493 = CGSC7353[4]

est. P1 cotransduction: % [10]
Synonyms:zbi-29::Tn10

zca-1230::Tn10

Linked marker

CAG18478 = CGSC7356[4]

est. P1 cotransduction: 21% [10]
Synonyms:zbj-1230::Tn10

edit table


Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10754

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10754

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000745

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:946132

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0747

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002958

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

[back to top]



<protect>

References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ Recny, MA et al. (1985) Characterization of the alpha-peptide released upon protease activation of pyruvate oxidase. J. Biol. Chem. 260 14287-91 PubMed
  3. ↑ 3.0 3.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  4. ↑ 4.0 4.1 4.2 CGSC: The Coli Genetics Stock Center
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 Ito, M et al. (2005) Functional analysis of 1440 Escherichia coli genes using the combination of knock-out library and phenotype microarrays. Metab. Eng. 7 318-27 PubMed
  6. ↑ Chang, YY & Cronan, JE Jr (1988) Common ancestry of Escherichia coli pyruvate oxidase and the acetohydroxy acid synthases of the branched-chain amino acid biosynthetic pathway. J Bacteriol 170 3937-45 PubMed
  7. ↑ Chang, YY et al. (1994) Expression of Escherichia coli pyruvate oxidase (PoxB) depends on the sigma factor encoded by the rpoS(katF) gene. Mol. Microbiol. 11 1019-28 PubMed
  8. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  9. ↑ Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
  10. ↑ 10.0 10.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=poxB:Gene&oldid=1476991"