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|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
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{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  
{|   id="H46a9b013c4998" class=" tableEdit Gene_nomenclature_table"


|-
|-
!align=left {{table_heading_style}} |Standard name
!align=left {{table_heading_style}} |Standard name
||
||
''yajQ''  
''yajQ''
|-
|-
!align=left {{table_heading_style}} |Mnemonic
!align=left {{table_heading_style}} |Mnemonic
||
||
 
Systematic nomenclature
|-
|-
!align=left {{table_heading_style}} |Synonyms
!align=left {{table_heading_style}} |Synonyms
||
||
''ECK0420, b0426, JW5058''<ref name='LIB:Riley_2006'/>
''ECK0420, b0426, JW5058''<ref name='LIB:Riley_2006'/>, JW5058''


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*  
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****************************************************************************************** -->{{Gene_location_help}}
****************************************************************************************** -->{{Gene_location_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="V46a9b01479bac"  class=" tableEdit Gene_location_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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9.57 minutes&nbsp;
9.57 minutes&nbsp;
|
|
MG1655: 443907..444398<br />{{GBrowseFigureByCoord|442907|445398|ecoli|MG1655}}
MG1655: 443907..444398<br /><gbrowseImage>
name=NC_000913:443907..444398
source=MG1655
preset=GeneLocation
</gbrowseImage>
 
|
|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G6240 EcoCyc]
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G6240 EcoCyc]
{{GBrowseLink|ecoli|NC_000913|442907|445398|GBrowse(MG1655)}}
{{GBrowseLink|MG1655|NC_000913|442907|445398|GBrowse(MG1655)}}
   
   
|
|
{{GBrowseFastaLink|ecoli|NC_000913|443907|444398|FASTA Dump}}
{{GBrowseFastaLink|MG1655|NC_000913|443907|444398|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=G6240 EcoCyc Sequence Dump]  
*[http://biocyc.org/ECOLI/sequence?object=G6240 EcoCyc Sequence Dump]  
|-
|
[[REL606]]
|
|
NC_012967: 413105..413596<br /><gbrowseImage>
name=NC_012967:413105..413596
source=REL606
preset=GeneLocation
</gbrowseImage>
|
{{GBrowseLink|REL606|NC_012967|413105|413596|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|413105|413596|FASTA Dump}}
|-
|
[[BW2952]]
|
|
NC_012759: 346666..347157<br /><gbrowseImage>
name=NC_012759:346666..347157
source=BW2952
preset=GeneLocation
</gbrowseImage>
|
{{GBrowseLink|BW2952|NC_012759|346666|347157|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|346666|347157|FASTA Dump}}
|-  
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&nbsp;
&nbsp;
|
|
W3110: 443907..444398<br />{{GBrowseFigureByCoord|442907|445398|ecoli_W3110|W3110}}
W3110: 443907..444398<br /><gbrowseImage>
name=NC_007779:443907..444398
source=W3110
preset=GeneLocation
</gbrowseImage>
 
|
|
{{GBrowseLink|ecoli_W3110|AC_000091|442907|445398|GBrowse(W3110)}}  
{{GBrowseLink|W3110|NC_007779|442907|445398|GBrowse(W3110)}}  
|
|
{{GBrowseFastaLink|ecoli_W3110|AC_000091|443907|444398|FASTA Dump}}  
{{GBrowseFastaLink|W3110|NC_007779|443907|444398|FASTA Dump}}  
|-  
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|
|
DH10B: 383238..383729<br />{{GBrowseFigureByCoord|382256|384711|ecoli_DH10B|DH10B}}
DH10B: 383238..383729<br /><gbrowseImage>
name=NC_010473:383238..383729
source=DH10B
preset=GeneLocation
</gbrowseImage>
 
|
|
{{GBrowseLink|ecoli_DH10B|NC_010473|382256|384711|GBrowse(DH10B)}}
{{GBrowseLink|DH10B|NC_010473|382256|384711|GBrowse(DH10B)}}
|
|
{{GBrowseFastaLink|ecoli_DH10B|NC_010473|382256|384711|FASTA Dump}}  
{{GBrowseFastaLink|DH10B|NC_010473|382256|384711|FASTA Dump}}  


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*  
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****************************************************************************************** -->{{Gene_sequence_features_help}}
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{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="K46a9b015647ed"  class=" tableEdit Gene_sequence_features_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Feature type!!Location!!Description
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
|-
|
Coding Start (SO:0000323)
|
[[MG1655]]
|
443910
|
Edman degradation
|
PMID:12381839<br />
|


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*  
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****************************************************************************************** -->{{Gene_alleles_help}}
****************************************************************************************** -->{{Gene_alleles_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" {{Prettytable}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="M46a9b015d3fa8"  class=" tableEdit Gene_allele_table dataTable" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-  
|-  
|
|
&Delta;yajQ (Keio:JW5058)
''yajQ(del)'' (Keio:JW5058)
|
|
deletion
deletion
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PMID:16738554
PMID:16738554
|
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen]<br>[http://cgsc2.biology.yale.edu/Strain.php?ID=99641 CGSC8295]<ref name='LIB:cgsc'/>  
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen]
 
[http://cgsc2.biology.yale.edu/Strain.php?ID=99641 CGSC8295]<ref name='LIB:cgsc'/>  
|
|
   
   
|-  
|-  
|
|
''&#916;yajQ737::kan''
''yajQ737(del)::kan''
|
|


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===Notes===
===Notes===


==Genetic Interactions==
{{BacktoTop}}
<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.11417.H4e04c6374d9cf-->
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===Notes===


==Genetic Resources==
==Genetic Resources==
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|- {{table_heading_style}}
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!|Resource!!Resource Type!!Source!!Notes/Reference
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Primer 2:CCATCGCGGAAGTTTTTGAACTG  
Primer 2:CCATCGCGGAAGTTTTTGAACTG  
|-
|
[[:Category:Kohara_Phage:19F6|19F6]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=146 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:2H5|2H5]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=147 Genobase]
|
PMID:3038334
|-  
|-  
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Synonyms:zba-3054::Tn10  
Synonyms:zba-3054::Tn10  


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|- {{table_heading_style}}
|- {{table_heading_style}}
!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-  
|-  
|
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
[[EcoCyc]]
|
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6240 EcoCyc:G6240]
EcoCyc:G6240
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
[[EcoGene]]
|
|
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB3379 EchoBASE:EB3379]
EcoGene:EG13613
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
[[RegulonDB]]
|
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b0426 EcoliGenExpDB:b0426]
RegulonDB:ECK120002851
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
|
[http://BioCyc.org/ECOL199310/new-image?object=C0537 ECOL199310CYC:C0537]
[http://www.ncbi.nlm.nih.gov/gene?term=945063 GeneID:945063]
|
|
Escherichia coli str. K-12 substr. MG1655
|-  
|-  
|
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
[[EchoBASE]]
|
|
[http://ecogene.org/geneinfo.php?eg_id=EG13613 EcoGene:EG13613]
EchoBASE:EB3379
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])
[[ASAP]]
|
[http://BioCyc.org/ECOO157/new-image?object=YAJQ ECOO157CYC:YAJQ]
|
|
ASAP:ABE-0001478
|-  
|
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]  
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0001478&formSubmitReturn=1 ASAP:ABE-0001478]
|


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[[Category:Genes in the ASKA clone collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:yaj genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:yaj genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:y genes]]
[[Category:y genes]]
[[Category:Gene_List:BW2952]]

Latest revision as of 20:30, 19 September 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

yajQ

Mnemonic

Systematic nomenclature

Synonyms

ECK0420, b0426, JW5058[1], JW5058

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

9.57 minutes 

MG1655: 443907..444398
<gbrowseImage> name=NC_000913:443907..444398 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 413105..413596
<gbrowseImage> name=NC_012967:413105..413596 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 346666..347157
<gbrowseImage> name=NC_012759:346666..347157 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 443907..444398
<gbrowseImage> name=NC_007779:443907..444398 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 383238..383729
<gbrowseImage> name=NC_010473:383238..383729 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

443910

Edman degradation

PMID:12381839[2]


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

yajQ(del) (Keio:JW5058)

deletion

deletion

PMID:16738554[3]

Shigen

CGSC8295[4]

yajQ737(del)::kan

PMID:16738554[3]

CGSC:99639


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW5058

Plasmid clone

Shigen

PMID:16769691[5]

Status:Clone OK

Primer 1:GCCCCATCTTTCGATATTGTCTC

Primer 2:CCATCGCGGAAGTTTTTGAACTG

19F6

Kohara Phage

Genobase

PMID:3038334[6]

2H5

Kohara Phage

Genobase

PMID:3038334[6]

tsx-247::Tn10

Linked marker

CAG12148 = CGSC7337[4]

est. P1 cotransduction: 65% [7]

zaj-3054::Tn10

Linked marker

CAG12017 = CGSC7339[4]

est. P1 cotransduction: 58% [7]
Synonyms:zba-3054::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:G6240

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13613

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002851

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:945063

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3379

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001478

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ Saveanu, C et al. (2002) Structural and nucleotide-binding properties of YajQ and YnaF, two Escherichia coli proteins of unknown function. Protein Sci. 11 2551-60 PubMed
  3. ↑ 3.0 3.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  4. ↑ 4.0 4.1 4.2 CGSC: The Coli Genetics Stock Center
  5. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  6. ↑ 6.0 6.1 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
  7. ↑ 7.0 7.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

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