yajQ:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YajQ

Synonyms

predicted nucleotide binding protein[1], B0426[2][1], YajQ[2][1] , ECK0420, JW5058, b0426

Product description

nucleotide binding protein[2][3]

Activator of phage Phi6 L segment transcription; Phi6 host factor; binds tRNA, ATP and GTP; low abundance protein[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0000166

nucleotide binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

PMID:12381839[5]

IDA: Inferred from Direct Assay

F

complete

GO:0000049

tRNA binding

PMID:12381839[5]

IDA: Inferred from Direct Assay

F

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

dnaN

PMID:15690043[6]

Experiment(s):EBI-885832

Protein

napD

PMID:15690043[6]

Experiment(s):EBI-892385, EBI-892823

Protein

napD

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

dnaN

PMID:19402753[7]

MALDI(Z-score):35.939369

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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKGEEKMPSF DIVSEVDLQE ARNAVDNASR EVESRFDFRN VEASFELNDA SKTIKVLSES
DFQVNQLLDI LRAKLLKRGI EGSSLDVPEN IVHSGKTWFV EAKLKQGIES ATQKKIVKMI
KDSKLKVQAQ IQGDEIRVTG KSRDDLQAVM AMVRGGDLGQ PFQFKNFRD
Length

169

Mol. Wt

19.046 kDa

pI

5.7 (calculated)

Extinction coefficient

5,500 (calc based on 0 Y, 1 W, and 0 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References

Domain

1..162

PF04461 Protein of unknown function (DUF520)

PMID:19920124[8]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yajQ taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111132

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945063

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001478

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A8E7

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6240

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13613

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945063

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002851

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3379

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Saveanu, C et al. (2002) Structural and nucleotide-binding properties of YajQ and YnaF, two Escherichia coli proteins of unknown function. Protein Sci. 11 2551-60 PubMed
  6. ↑ 6.0 6.1 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  7. ↑ 7.0 7.1 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  8. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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