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On One Page

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Gene |

Product(s) |

Expression|

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Standard Name	yfbT
Gene Synonym(s)	ECK2287, b2293, JW5376^[1], JW5376
Product Desc.	sugar phosphatase^[2]^[3] Sugar phosphatase; physiological role unknown; in vitro substrates include: fructose-1-P, fructose-6-P, glucose 6-P, ribose-5-P; selectively hydrolyzes beta-D-glucose-1-P; HAD2^[4]
Product Synonyms(s)	predicted hydrolase or phosphatase^[1], YfbT^[2]^[1], B2293^[2]^[1] , ECK2287, JW5376, b2293
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): yfbT^[2]
Regulation/Activity
Quick Links
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</protect> See Help:Quickview for help with entering information in the Quickview table. <protect></protect>

Notes

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YfbT is an expressed protein. HAD superfamily. In vitro activities demonstrated by Kuznetsova et al. (2005, 2006).^[4]

Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name	yfbT
Mnemonic	Systematic nomenclature
Synonyms	ECK2287, b2293, JW5376^[1], JW5376
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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain	Map location	Genome coordinates	Genome browsers	Sequence links
MG1655	51.93 minutes, 51.93 minutes	MG1655: 2410111..2409461 <gbrowseImage> name=NC_000913:2409461..2410111 source=MG1655 preset=GeneLocation </gbrowseImage>	EcoCyc GBrowse(MG1655)	FASTA Dump EcoCyc Sequence Dump
REL606		NC_012967: 2355680..2355030 <gbrowseImage> name=NC_012967:2355030..2355680 source=REL606 preset=GeneLocation </gbrowseImage>	GBrowse (REL606)	FASTA Dump
BW2952		NC_012759: 2295266..2295916 <gbrowseImage> name=NC_012759:2295266..2295916 source=BW2952 preset=GeneLocation </gbrowseImage>	GBrowse (BW2952)	FASTA Dump
W3110		W3110: 2417535..2416885 <gbrowseImage> name=NC_007779:2416885..2417535 source=W3110 preset=GeneLocation </gbrowseImage>	GBrowse(W3110)	FASTA Dump
DH10B		DH10B: 2501876..2501226 <gbrowseImage> name=NC_010473:2501226..2501876 source=DH10B preset=GeneLocation </gbrowseImage>	GBrowse(DH10B)	FASTA Dump
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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type	Strain	Genomic Location	Evidence	Reference	Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele	Nt change(s)	AA change(s)	Phenotype: Type	Phenotype: Description	Reference	Availability
ΔyfbT (Keio:JW5376)	deletion	deletion			PMID:16738554	Shigen CGSC11350^[5]
ΔyfbT::kan	deletion		Biolog:respiration	unable to respire Acetate	PMID:16095938
ΔyfbT775::kan					PMID:16738554	CGSC:104664
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Notes

Genetic Interactions

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Interactor	Interaction	Allele	Score(s)	Reference(s)	Accessions	Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource	Resource Type	Source	Notes/Reference
JW5376	Plasmid clone	Shigen	PMID:16769691 Status:Clone OK Primer 1:GCCCGGTGCAAAGGTTTTCTGTT Primer 2:CCtTGAATAATAACATCGCCATT
9C2	Kohara Phage	Genobase	PMID:3038334
E9C9	Kohara Phage	Genobase	PMID:3038334
zfb-223::Tn10	Linked marker	CAG18484 = CGSC7406^[5]	est. P1 cotransduction: 48% ^[6] Synonyms:zej-223::Tn10
zfd-1::Tn10	Linked marker	CAG18467 = CGSC7408^[5]	est. P1 cotransduction: % ^[6] Synonyms:zfb-1::Tn10
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:G7187	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG14104	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120003762	Escherichia coli str. K-12 substr. MG1655
NCBI (EcoliWiki Page)	GeneID:946777	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB3857	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0007567	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name	YfbT
Synonyms	predicted hydrolase or phosphatase^[1], YfbT^[2]^[1], B2293^[2]^[1] , ECK2287, JW5376, b2293
Product description	sugar phosphatase^[2]^[3] Sugar phosphatase; physiological role unknown; in vitro substrates include: fructose-1-P, fructose-6-P, glucose 6-P, ribose-5-P; selectively hydrolyzes beta-D-glucose-1-P; HAD2^[4]
EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0003824	catalytic activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR005834	F	Seeded from EcoCyc (v14.0)	complete
	GO:0008152	metabolic process	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR005833	P	Seeded from EcoCyc (v14.0)	complete
	GO:0008152	metabolic process	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR005834	P	Seeded from EcoCyc (v14.0)	complete
	GO:0008152	metabolic process	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR006439	P	Seeded from EcoCyc (v14.0)	complete
	GO:0008967	phosphoglycolate phosphatase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR006439	F	Seeded from EcoCyc (v14.0)	complete
	GO:0016787	hydrolase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR005833	F	Seeded from EcoCyc (v14.0)	complete
	GO:0016787	hydrolase activity	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0378	F	Seeded from EcoCyc (v14.0)	complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MPEEARVRCK GFLFDLDGTL VDSLPAVERA WSNWARRHGL APEEVLAFIH GKQAITSLRH FMAGKSEADI AAEFTRLEHI EATETEGITA LPGAIALLSH LNKAGIPWAI VTSGSMPVAR ARHKIAGLPA PEVFVTAERV KRGKPEPDAY LLGAQLLGLA PQECVVVEDA PAGVLSGLAA GCHVIAVNAP ADTPRLNEVD LVLHSLEQIT VTKQPNGDVI IQ
Length	222
Mol. Wt	23.688 kDa
pI	5.9 (calculated)
Extinction coefficient	17,990 - 18,365 (calc based on 1 Y, 3 W, and 3 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
Domain	3..175	PF00702 haloacid dehalogenase-like hydrolase		PMID:19920124
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yfbT taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:90111414	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:946777	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0007567	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P77625	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:G7187	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG14104	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:946777	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120003762	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB3857	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Cellular Levels

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See Help:Cellular levels

Molecule	Organism or Strain	Value	Units	Experimental Conditions	Assay used	Notes	Reference(s)
Protein	Ecoli K-12	0.806+/-0.074	Molecules/cell	Medium: Temperature (°C): Doubling time (min): Growth Rate(min): * Growth phase: other: *		Single Molecule Fluorescence	PMID:20671182
mRNA	Ecoli K-12	0.083076923	Molecules/cell	Medium: Temperature (°C): Doubling time (min): Growth Rate(min): * Growth phase: other: *		by RNA_Seq	PMID:20671182
Protein	E. coli K-12 MG1655	488	molecules/cell/generation	Medium: MOPS Complete Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
Protein	E. coli K-12 MG1655	289	molecules/cell/generation	Medium: MOPS Minimal Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
Protein	E. coli K-12 MG1655	349	molecules/cell/generation	Medium: MOPS Complete without Methionine Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
yfbT
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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:2410091..2410131 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name	Mutation	Phenotype	Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type	Reference	Notes
microarray	GEO Profiles:b2293 (EcoliWiki Page)	NCBI GEO profiles for yfbT
microarray	GenExpDB:b2293 (EcoliWiki Page)	Summary of data for yfbT from multiple microarray studies
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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name	Resource Type	Description	Source	Notes
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Notes

Accessions Related to yfbT Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:G7187	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB3857	Escherichia coli str. K-12 substr. MG1655
EcoliGenExpDB (EcoliWiki Page)	EcoliGenExpDB:b2293
EcoGene	EcoGene:EG14104	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120003762	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0007567	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism	Homologs (Statistics)	Comments
Arabidopsis thaliana	AT4G21470 (score: 1.000; bootstrap: 78%) AT4G25840 (score: 0.077) AT5G57440 (score: 0.076)	From Inparanoid:20070104
Caenorhabditis briggsae	WBGene00042333 (score: 1.000; bootstrap: 100%) WBGene00023956 (score: 0.787)	From Inparanoid:20070104
Caenorhabditis elegans	WBGene00020113 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Drosophila melanogaster	FBgn0031335 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Oryza gramene	Q652P6 (score: 1.000; bootstrap: 59%) Q7XTZ9 (score: 0.239) Q9FUN1 (score: 0.236) Q8S485 (score: 0.236) Q60DU2 (score: 0.086)	From Inparanoid:20070104
Saccharomyces cerevisiae	YHR044C (score: 1.000; bootstrap: 91%) YHR043C (score: 0.913) YIL053W (score: 0.056) YER062C (score: 0.051)	From Inparanoid:20070104
Xenopus tropicalis	ENSXETP00000040945 (score: 1.000; bootstrap: 71%)	From Inparanoid:20070104
Shigella flexneri	YFBT	From SHIGELLACYC
E. coli O157	YFBT	From ECOO157CYC
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Do-It-Yourself Web Tools

Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
Pfam (EcoliWiki Page)	PF00702 haloacid dehalogenase-like hydrolase
Superfamily (EcoliWiki Page)	SUPERFAMILY:56784
EcoCyc	EcoCyc:G7187	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG14104	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120003762	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB3857	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0007567	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 ^1.7 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 ^2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 ^4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ ^5.0 ^5.1 ^5.2 CGSC: The Coli Genetics Stock Center
↑ ^6.0 ^6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

yfbT:On One Page

Quickview

Notes

Gene

Nomenclature

Notes

Location(s) and DNA Sequence

Notes

Sequence Features

Notes

Alleles and Phenotypes

Notes

Genetic Interactions

Notes

Genetic Resources

Notes

Accessions in Other Databases

Notes

Links

Product(s)

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

Expression

Overview

Cellular Levels

Notes

Transcription and Transcriptional Regulation

Notes

Translation and Regulation of Translation

Notes

Turnover and Regulation of Turnover

Notes

Experimental

Notes

Accessions Related to yfbT Expression

Notes

Links

Evolution

Homologs in Other Organisms

Do-It-Yourself Web Tools

Notes

Families

Notes

Links

References

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