{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

On One Page

Quickview |

Gene |

Product(s) |

Expression|

Evolution |

References |

Quickview

[back to top]

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Standard Name	yeeJ
Gene Synonym(s)	ECK1974, b1978, JW5833^[1], JW5833
Product Desc.	adhesin^[2]^[3] Overexpression increases adhesion and biofilm formation; probable adhesin, function unknown; intimin/invasin homolog^[4]
Product Synonyms(s)	adhesin^[1], B1978^[2]^[1], YeeJ^[2]^[1] , ECK1974, JW5833, b1978
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): yeeJ^[2]
Regulation/Activity
Quick Links
edit table

</protect> See Help:Quickview for help with entering information in the Quickview table. <protect></protect>

Notes

[back to top]

YeeJ contains 13 Big-1 (Bacterial Ig-like) repeate domains from residues 739-2053.^[4]

Gene

[back to top]

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css> <protect>

Nomenclature

[back to top]

See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name	yeeJ
Mnemonic	Systematic nomenclature
Synonyms	ECK1974, b1978, JW5833^[1], JW5833
edit table

</protect>

Notes

Location(s) and DNA Sequence

[back to top]

<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain	Map location	Genome coordinates	Genome browsers	Sequence links
MG1655	44.03 minutes, 44.03 minutes	MG1655: 2042935..2050038 <gbrowseImage> name=NC_000913:2042935..2050038 source=MG1655 preset=GeneLocation </gbrowseImage>	EcoCyc GBrowse(MG1655)	FASTA Dump EcoCyc Sequence Dump
REL606		NC_012967: 1982862..1990013 <gbrowseImage> name=NC_012967:1982862..1990013 source=REL606 preset=GeneLocation </gbrowseImage>	GBrowse (REL606)	FASTA Dump
BW2952		NC_012759: 1935445..1942521 <gbrowseImage> name=NC_012759:1935445..1942521 source=BW2952 preset=GeneLocation </gbrowseImage>	GBrowse (BW2952)	FASTA Dump
W3110		W3110: 2047048..2054151 <gbrowseImage> name=NC_007779:2047048..2054151 source=W3110 preset=GeneLocation </gbrowseImage>	GBrowse(W3110)	FASTA Dump
DH10B		DH10B: 2133943..2141046 <gbrowseImage> name=NC_010473:2133943..2141046 source=DH10B preset=GeneLocation </gbrowseImage>	GBrowse(DH10B)	FASTA Dump
edit table

</protect>

Notes

Sequence Features

[back to top]

See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type	Strain	Genomic Location	Evidence	Reference	Notes
edit table

Notes

Alleles and Phenotypes

[back to top]

See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele	Nt change(s)	AA change(s)	Phenotype: Type	Phenotype: Description	Reference	Availability	Comments
ΔyeeJ (Keio:JW5833)	deletion	deletion			PMID:16738554	Shigen
edit table

Notes

Genetic Interactions

[back to top]

Interactor	Interaction	Allele	Score(s)	Reference(s)	Accessions	Notes
edit table

</protect>

Notes

Genetic Resources

[back to top]

See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource	Resource Type	Source	Notes/Reference
JW5833	Plasmid clone	Shigen	PMID:16769691 Status:Clone OK Primer 1:GCCTTAGCTCGTTCAGGGAAGGT Primer 2:CCaAGGTTTTTATAACATGTCGC
9G6	Kohara Phage	Genobase	PMID:3038334
7D4	Kohara Phage	Genobase	PMID:3038334
9B2	Kohara Phage	Genobase	PMID:3038334
zed-3069::Tn10	Linked marker	CAG18451 = CGSC7395^[5]	est. P1 cotransduction: 81% ^[6]
zef-3129::Tn10	Linked marker	CAG12099 = CGSC7397^[5]	est. P1 cotransduction: 18% ^[6] Synonyms:zee-3129::Tn10
edit table

Notes

Accessions in Other Databases

[back to top]

See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:G7064	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG13378	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120003650	Escherichia coli str. K-12 substr. MG1655
NCBI (EcoliWiki Page)	GeneID:946498	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB3160	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0006563	Escherichia coli str. K-12 substr. MG1655
edit table

Notes

Links

[back to top]

Name	URL	Comments
edit table

Product(s)

[back to top]

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name	YeeJ
Synonyms	adhesin^[1], B1978^[2]^[1], YeeJ^[2]^[1] , ECK1974, JW5833, b1978
Product description	adhesin^[2]^[3] Overexpression increases adhesion and biofilm formation; probable adhesin, function unknown; intimin/invasin homolog^[4]
EC number (for enzymes)
edit table

Notes

Function

[back to top]

<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0007155	cell adhesion	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR003535	P	Seeded from EcoCyc (v14.0)	complete
edit table

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	References	Evidence
Protein	rpsR	PMID:19402753	LCMS(ID Probability):99.6
Protein	rplW	PMID:19402753	LCMS(ID Probability):99.6
Protein	purA	PMID:19402753	LCMS(ID Probability):99.6
Protein	nuoG	PMID:19402753	LCMS(ID Probability):99.6
Protein	nuoE	PMID:19402753	LCMS(ID Probability):99.6
Protein	ygiC	PMID:19402753	LCMS(ID Probability):99.6
edit table

</protect>

Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
edit table

Notes

Structure and Physical Properties

[back to top]

<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MLSVFTFFRC ARKGAFMLAR SGKVSMATKK RSGEEINDRQ ILCGMGIKLR RLTAGICLIT QLAFPMAAAA QGVVNAATQQ PVPAQIAIAN ANTVPYTLGA LESAQSVAER FGISVAELRK LNQFRTFARG FDNVRQGDEL DVPAQVSEKK LTPPPGNSSD NLEQQIASTS QQIGSLLAED MNSEQAANMA RGWASSQASG AMTDWLSRFG TARITLGVDE DFSLKNSQFD FLHPWYETPD NLFFSQHTLH RTDERTQINN GLGWRHFTPT WMSGINFFFD HDLSRYHSRA GIGAEYWRDY LKLSSNGYLR LTNWRSAPEL DNDYEARPAN GWDVRAESWL PAWPHLGGKL VYEQYYGDEV ALFDKDDRQS NPHAITAGLN YTPFPLMTFS AEQRQGKQGE NDTRFAVDFT WQPGSAMQKQ LDPNEVAARR SLAGSRYDLV DRNNNIVLEY RKKELVRLTL TDPVTGKSGE VKSLVSSLQT KYALKGYNVE ATALEAAGGK VVTTGKDILV TLPAYRFTST PETDNTWPIE VTAEDVKGNL SNREQSMVVV QAPTLSQKDS SVSLSTQTLN ADSHSTATLT FIAHDAAGNP VVGLVLSTRH EGVQDITLSD WKDNGDGSYT QILTTGAMSG TLTLMPQLNG VDAAKAPAVV NIISVSSSRT HSSIKIDKDR YLSGNPIEVT VELRDENDKP VKEQKQQLNN AVSIDNVKPG VTTDWKETAD GVYKATYTAY TKGSGLTAKL LMQNWNEDLH TAGFIIDANP QSAKIATLSA SNNGVLANEN AANTVSVNVA DEGSNPINDH TVTFAVLSGS ATSFNNQNTA KTDVNGLATF DLKSSKQEDN TVEVTLENGV KQTLIVSFVG DSSTAQVDLQ KSKNEVVADG NDSVTMTATV RDAKGNLLND VMVTFNVNSA EAKLSQTEVN SHDGIATATL TSLKNGDYRV TASVSSGSQA NQQVNFIGDQ STAALTLSVP SGDITVTNTA PQYMTATLQD KNGNPLKDKE ITFSVPNDVA SKFSISNGGK GMTDSNGVAI ASLTGTLAGT HMIMARLANS NVSDAQPMTF VADKDRAVVV LQTSKAEIIG NGVDETTLTA TVKDPSNHPV AGITVNFTMP QDVAANFTLE NNGIAITQAN GEAHVTLKGK KAGTHTVTAT LGNNNTSDSQ PVTFVADKAS AQVVLQISKD EITGNGVDSA TLTATVKDQF DNEVNNLPVT FSSASSGLTL TPGVSNTNES GIAQATLAGV AFGEKTVTAS LANNGASDNK TVHFIGDTAA AKIIELAPVP DSIIAGTPQN SSGSVITATV VDNNGFPVKG VTVNFTSNAA TAEMTNGGQA VTNEQGKATV TYTNTRSSIE SGARPDTVEA SLENGSSTLS TSINVNADAS TAHLTLLQAL FDTVSAGETT SLYIEVKDNY GNGVPQQEVT LSVSPSEGVT PSNNAIYTTN HDGNFYASFT ATKAGVYQLT ATLENGDSMQ QTVTYVPNVA NAEITLAASK DPVIADNNDL TTLTATVADT EGNAIANTEV TFTLPEDVKA NFTLSDGGKV ITDAEGKAKV TLKGTKAGAH TVTASMTGGK SEQLVVNFIA DTLTAQVNLN VTEDNFIANN VGMTRLQATV TDGNGNPLAN EAVTFTLPAD VSASFTLGQG GSAITDINGK AEVTLSGTKS GTYPVTVSVN NYGVSDTKQV TLIADAGTAK LASLTSVYSF VVSTTEGATM TASVTDANGN PVEGIKVNFR GTSVTLSSTS VETDDRGFAE ILVTSTEVGL KTVSASLADK PTEVISRLLN ASADVNSATI TSLEIPEGQV MVAQDVAVKA HVNDQFGNPV AHQPVTFSAE PSSQMIISQN TVSTNTQGVA EVTMTPERNG SYMVKASLPN GASLEKQLEA IDEKLTLTAS SPLIGVYAPT GATLTATLTS ANGTPVEGQV INFSVTPEGA TLSGGKVRTN SSGQAPVVLT SNKVGTYTVT ASFHNGVTIQ TQTTVKVTGN SSTAHVASFI ADPSTIAATN TDLSTLKATV EDGSGNLIEG LTVYFALKSG SATLTSLTAV TDQNGIATTS VKGAMTGSVT VSAVTTAGGM QTVDITLVAG PADTSQSVLK SNRSSLKGDY TDSAELRLVL HDISGNPIKV SEGMEFVQSG TNVPYIKISA IDYSLNINGD YKATVTGGGE GIATLIPVLN GVHQAGLSTT IQFTRAEDKI MSGTVSVNGT DLPTTTFPSQ GFTGAYYQLN NDNFAPGKTA ADYEFSSSAS WVDVDATGKV TFKNVGSNSE RITATPKSGG PSYVYEIRVK SWWVNAGEAF MIYSLAENFC SSNGYTLPRA NYLNHCSSRG IGSLYSEWGD MGHYTTDAGF QSNMYWSSSP ANSSEQYVVS LATGDQSVFE KLGFAYATCY KNL
Length	2,383
Mol. Wt	251.36 kDa
pI	4.8 (calculated)
Extinction coefficient	191,950 - 192,700 (calc based on 55 Y, 20 W, and 6 C residues)
edit table

Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	References
Domain	735..834	PF02369 Bacterial Ig-like domain (group 1)	PMID:19920124
Domain	833..931	PF02369 Bacterial Ig-like domain (group 1)	PMID:19920124
Domain	932..1033	PF02369 Bacterial Ig-like domain (group 1)	PMID:19920124
Domain	1042..1137	PF02369 Bacterial Ig-like domain (group 1)	PMID:19920124
Domain	1140..1237	PF02369 Bacterial Ig-like domain (group 1)	PMID:19920124
Domain	1247..1350	PF02369 Bacterial Ig-like domain (group 1)	PMID:19920124
Domain	1351..1450	PF02369 Bacterial Ig-like domain (group 1)	PMID:19920124
Domain	1452..1553	PF02369 Bacterial Ig-like domain (group 1)	PMID:19920124
Domain	1554..1655	PF02369 Bacterial Ig-like domain (group 1)	PMID:19920124
Domain	1659..1754	PF02369 Bacterial Ig-like domain (group 1)	PMID:19920124
Domain	1758..1854	PF02369 Bacterial Ig-like domain (group 1)	PMID:19920124
Domain	1856..1950	PF02369 Bacterial Ig-like domain (group 1)	PMID:19920124
Domain	1953..2053	PF02369 Bacterial Ig-like domain (group 1)	PMID:19920124
Domain	139..419	PF11924 Protein of unknown function (DUF3442)	PMID:19920124
edit table

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yeeJ taxon=562,83333 </beststructure>

Models

View models at:

edit table

</protect>

Structure figures

</protect>

Notes

Gene Product Resources

[back to top]

See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
edit table

Notes

Accessions in Other Databases

[back to top]

See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:145698281	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:946498	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0006563	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P76347	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:G7064	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG13378	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:946498	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120003650	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB3160	Escherichia coli str. K-12 substr. MG1655
edit table

Notes

Links

[back to top]

Name	URL	Comments
edit table

Expression

[back to top]

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Cellular Levels

[back to top]

See Help:Cellular levels

Molecule	Organism or Strain	Value	Units	Experimental Conditions	Assay used	Notes	Reference(s)
Protein	E. coli K-12 MG1655	3	molecules/cell/generation	Medium: MOPS Complete Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
Protein	E. coli K-12 MG1655	5	molecules/cell/generation	Medium: MOPS Minimal Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
Protein	E. coli K-12 MG1655	0^a	molecules/cell/generation	Medium: MOPS Complete without Methionine Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling	Low confidence in the sequencing data set.	PMID: 24766808
edit table

Notes

Transcription and Transcriptional Regulation

[back to top]

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
yeeJ
edit table

Figure courtesy of RegulonDB

</protect>

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

[back to top]

<protect><gbrowseImage> name=NC_000913:2042915..2042955 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

</protect>

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

[back to top]

<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name	Mutation	Phenotype	Reference
edit table

Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type	Reference	Notes
microarray	GEO Profiles:b1978 (EcoliWiki Page)	NCBI GEO profiles for yeeJ
microarray	GenExpDB:b1978 (EcoliWiki Page)	Summary of data for yeeJ from multiple microarray studies
edit table

Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name	Resource Type	Description	Source	Notes
	GFP Fusion	Intergenic region (2042549..2042910) fused to gfpmut2.	OpenBioSystems	GFP fusion described in Zaslaver, et al. Plate:109-AZ05; Well:B7^[7]
edit table

Notes

Accessions Related to yeeJ Expression

[back to top]

See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:G7064	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB3160	Escherichia coli str. K-12 substr. MG1655
EcoliGenExpDB (EcoliWiki Page)	EcoliGenExpDB:b1978
EcoGene	EcoGene:EG13378	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120003650	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0006563	Escherichia coli str. K-12 substr. MG1655
edit table

Notes

Links

[back to top]

Name	URL	Comments
edit table

Evolution

[back to top]

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Homologs in Other Organisms

[back to top]

See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism	Homologs (Statistics)	Comments
Apis mellifera	ENSAPMP00000004338 (score: 1.000; bootstrap: 100%) ENSAPMP00000008641 (score: 0.053)	From Inparanoid:20070104
Bos taurus	ENSBTAP00000010897 (score: 1.000; bootstrap: 100%) ENSBTAP00000019305 (score: 0.177) ENSBTAP00000019306 (score: 0.098) ENSBTAP00000022802 (score: 0.058) ENSBTAP00000038541 (score: 0.053)	From Inparanoid:20070104
Caenorhabditis elegans	WBGene00019435 (score: 1.000; bootstrap: 100%) WBGene00022536 (score: 0.091)	From Inparanoid:20070104
Ciona intestinalis	ENSCINP00000001906 (score: 1.000; bootstrap: 100%) ENSCINP00000002018 (score: 0.069)	From Inparanoid:20070104
Drosophila melanogaster	FBgn0036181 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Homo sapiens	ENSP00000333437 (score: 1.000; bootstrap: 100%) ENSP00000343037 (score: 0.053)	From Inparanoid:20070104
Macaca mulatta	ENSMMUP00000024517 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Rattus norvegicus	ENSRNOP00000035004 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Saccharomyces cerevisiae	YJR151C (score: 1.000; bootstrap: 100%) YIR019C (score: 0.120) YMR317W (score: 0.093) YAR050W (score: 0.088) YAL063C (score: 0.087) YJR150C (score: 0.065) YNR044W (score: 0.063) YKR102W (score: 0.057) YCR089W (score: 0.057) YDL038C (score: 0.053) YHR211W (score: 0.052) YOL155C (score: 0.051)	From Inparanoid:20070104
Xenopus tropicalis	ENSXETP00000002975 (score: 1.000; bootstrap: 68%) ENSXETP00000013190 (score: 0.357) ENSXETP00000006570 (score: 0.149) ENSXETP00000006678 (score: 0.105) ENSXETP00000038070 (score: 0.099) ENSXETP00000010781 (score: 0.096) ENSXETP00000040914 (score: 0.084) ENSXETP00000037152 (score: 0.064) ENSXETP00000041065 (score: 0.062) ENSXETP00000047044 (score: 0.062) ENSXETP00000033733 (score: 0.051)	From Inparanoid:20070104
E. coli O157	Z3135	From ECOO157CYC
edit table

Do-It-Yourself Web Tools

Notes

Families

[back to top]

See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
Pfam (EcoliWiki Page)	PF02369 Bacterial Ig-like domain (group 1)
Pfam (EcoliWiki Page)	PF02369 Bacterial Ig-like domain (group 1)
Pfam (EcoliWiki Page)	PF02369 Bacterial Ig-like domain (group 1)
Pfam (EcoliWiki Page)	PF02369 Bacterial Ig-like domain (group 1)
Pfam (EcoliWiki Page)	PF02369 Bacterial Ig-like domain (group 1)
Pfam (EcoliWiki Page)	PF02369 Bacterial Ig-like domain (group 1)
Pfam (EcoliWiki Page)	PF02369 Bacterial Ig-like domain (group 1)
Pfam (EcoliWiki Page)	PF02369 Bacterial Ig-like domain (group 1)
Pfam (EcoliWiki Page)	PF02369 Bacterial Ig-like domain (group 1)
Pfam (EcoliWiki Page)	PF02369 Bacterial Ig-like domain (group 1)
Pfam (EcoliWiki Page)	PF02369 Bacterial Ig-like domain (group 1)
Pfam (EcoliWiki Page)	PF02369 Bacterial Ig-like domain (group 1)
Pfam (EcoliWiki Page)	PF02369 Bacterial Ig-like domain (group 1)
Superfamily (EcoliWiki Page)	SUPERFAMILY:49373
Superfamily (EcoliWiki Page)	SUPERFAMILY:49373
Superfamily (EcoliWiki Page)	SUPERFAMILY:49373
Superfamily (EcoliWiki Page)	SUPERFAMILY:49373
Superfamily (EcoliWiki Page)	SUPERFAMILY:49373
Superfamily (EcoliWiki Page)	SUPERFAMILY:49373
Superfamily (EcoliWiki Page)	SUPERFAMILY:49373
Superfamily (EcoliWiki Page)	SUPERFAMILY:49373
Superfamily (EcoliWiki Page)	SUPERFAMILY:49373
Superfamily (EcoliWiki Page)	SUPERFAMILY:49373
Superfamily (EcoliWiki Page)	SUPERFAMILY:49373
Superfamily (EcoliWiki Page)	SUPERFAMILY:49373
Superfamily (EcoliWiki Page)	SUPERFAMILY:49373
Superfamily (EcoliWiki Page)	SUPERFAMILY:49373
Superfamily (EcoliWiki Page)	SUPERFAMILY:49373
Superfamily (EcoliWiki Page)	SUPERFAMILY:49373
Pfam (EcoliWiki Page)	PF11924 Protein of unknown function (DUF3442)
EcoCyc	EcoCyc:G7064	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG13378	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120003650	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB3160	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0006563	Escherichia coli str. K-12 substr. MG1655
edit table

Notes

Links

[back to top]

Name	URL	Comments
edit table

References

[back to top]

See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 ^1.7 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 ^2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 ^4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ ^5.0 ^5.1 CGSC: The Coli Genetics Stock Center
↑ ^6.0 ^6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

yeeJ:On One Page

Quickview

Notes

Gene

Nomenclature

Notes

Location(s) and DNA Sequence

Notes

Sequence Features

Notes

Alleles and Phenotypes

Notes

Genetic Interactions

Notes

Genetic Resources

Notes

Accessions in Other Databases

Notes

Links

Product(s)

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

Expression

Overview

Cellular Levels

Notes

Transcription and Transcriptional Regulation

Notes

Translation and Regulation of Translation

Notes

Turnover and Regulation of Turnover

Notes

Experimental

Notes

Accessions Related to yeeJ Expression

Notes

Links

Evolution

Homologs in Other Organisms

Do-It-Yourself Web Tools

Notes

Families

Notes

Links

References

Categories

Navigation menu

Search