yeeJ:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YeeJ

Synonyms

adhesin[1], B1978[2][1], YeeJ[2][1] , ECK1974, JW5833, b1978

Product description

adhesin[2][3]

Overexpression increases adhesion and biofilm formation; probable adhesin, function unknown; intimin/invasin homolog[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0007155

cell adhesion

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003535

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

rpsR

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rplW

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

purA

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

nuoG

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

nuoE

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

ygiC

PMID:19402753[5]

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MLSVFTFFRC ARKGAFMLAR SGKVSMATKK RSGEEINDRQ ILCGMGIKLR RLTAGICLIT
QLAFPMAAAA QGVVNAATQQ PVPAQIAIAN ANTVPYTLGA LESAQSVAER FGISVAELRK
LNQFRTFARG FDNVRQGDEL DVPAQVSEKK LTPPPGNSSD NLEQQIASTS QQIGSLLAED
MNSEQAANMA RGWASSQASG AMTDWLSRFG TARITLGVDE DFSLKNSQFD FLHPWYETPD
NLFFSQHTLH RTDERTQINN GLGWRHFTPT WMSGINFFFD HDLSRYHSRA GIGAEYWRDY
LKLSSNGYLR LTNWRSAPEL DNDYEARPAN GWDVRAESWL PAWPHLGGKL VYEQYYGDEV
ALFDKDDRQS NPHAITAGLN YTPFPLMTFS AEQRQGKQGE NDTRFAVDFT WQPGSAMQKQ
LDPNEVAARR SLAGSRYDLV DRNNNIVLEY RKKELVRLTL TDPVTGKSGE VKSLVSSLQT
KYALKGYNVE ATALEAAGGK VVTTGKDILV TLPAYRFTST PETDNTWPIE VTAEDVKGNL
SNREQSMVVV QAPTLSQKDS SVSLSTQTLN ADSHSTATLT FIAHDAAGNP VVGLVLSTRH
EGVQDITLSD WKDNGDGSYT QILTTGAMSG TLTLMPQLNG VDAAKAPAVV NIISVSSSRT
HSSIKIDKDR YLSGNPIEVT VELRDENDKP VKEQKQQLNN AVSIDNVKPG VTTDWKETAD
GVYKATYTAY TKGSGLTAKL LMQNWNEDLH TAGFIIDANP QSAKIATLSA SNNGVLANEN
AANTVSVNVA DEGSNPINDH TVTFAVLSGS ATSFNNQNTA KTDVNGLATF DLKSSKQEDN
TVEVTLENGV KQTLIVSFVG DSSTAQVDLQ KSKNEVVADG NDSVTMTATV RDAKGNLLND
VMVTFNVNSA EAKLSQTEVN SHDGIATATL TSLKNGDYRV TASVSSGSQA NQQVNFIGDQ
STAALTLSVP SGDITVTNTA PQYMTATLQD KNGNPLKDKE ITFSVPNDVA SKFSISNGGK
GMTDSNGVAI ASLTGTLAGT HMIMARLANS NVSDAQPMTF VADKDRAVVV LQTSKAEIIG
NGVDETTLTA TVKDPSNHPV AGITVNFTMP QDVAANFTLE NNGIAITQAN GEAHVTLKGK
KAGTHTVTAT LGNNNTSDSQ PVTFVADKAS AQVVLQISKD EITGNGVDSA TLTATVKDQF
DNEVNNLPVT FSSASSGLTL TPGVSNTNES GIAQATLAGV AFGEKTVTAS LANNGASDNK
TVHFIGDTAA AKIIELAPVP DSIIAGTPQN SSGSVITATV VDNNGFPVKG VTVNFTSNAA
TAEMTNGGQA VTNEQGKATV TYTNTRSSIE SGARPDTVEA SLENGSSTLS TSINVNADAS
TAHLTLLQAL FDTVSAGETT SLYIEVKDNY GNGVPQQEVT LSVSPSEGVT PSNNAIYTTN
HDGNFYASFT ATKAGVYQLT ATLENGDSMQ QTVTYVPNVA NAEITLAASK DPVIADNNDL
TTLTATVADT EGNAIANTEV TFTLPEDVKA NFTLSDGGKV ITDAEGKAKV TLKGTKAGAH
TVTASMTGGK SEQLVVNFIA DTLTAQVNLN VTEDNFIANN VGMTRLQATV TDGNGNPLAN
EAVTFTLPAD VSASFTLGQG GSAITDINGK AEVTLSGTKS GTYPVTVSVN NYGVSDTKQV
TLIADAGTAK LASLTSVYSF VVSTTEGATM TASVTDANGN PVEGIKVNFR GTSVTLSSTS
VETDDRGFAE ILVTSTEVGL KTVSASLADK PTEVISRLLN ASADVNSATI TSLEIPEGQV
MVAQDVAVKA HVNDQFGNPV AHQPVTFSAE PSSQMIISQN TVSTNTQGVA EVTMTPERNG
SYMVKASLPN GASLEKQLEA IDEKLTLTAS SPLIGVYAPT GATLTATLTS ANGTPVEGQV
INFSVTPEGA TLSGGKVRTN SSGQAPVVLT SNKVGTYTVT ASFHNGVTIQ TQTTVKVTGN
SSTAHVASFI ADPSTIAATN TDLSTLKATV EDGSGNLIEG LTVYFALKSG SATLTSLTAV
TDQNGIATTS VKGAMTGSVT VSAVTTAGGM QTVDITLVAG PADTSQSVLK SNRSSLKGDY
TDSAELRLVL HDISGNPIKV SEGMEFVQSG TNVPYIKISA IDYSLNINGD YKATVTGGGE
GIATLIPVLN GVHQAGLSTT IQFTRAEDKI MSGTVSVNGT DLPTTTFPSQ GFTGAYYQLN
NDNFAPGKTA ADYEFSSSAS WVDVDATGKV TFKNVGSNSE RITATPKSGG PSYVYEIRVK
SWWVNAGEAF MIYSLAENFC SSNGYTLPRA NYLNHCSSRG IGSLYSEWGD MGHYTTDAGF
QSNMYWSSSP ANSSEQYVVS LATGDQSVFE KLGFAYATCY KNL
Length

2,383

Mol. Wt

251.36 kDa

pI

4.8 (calculated)

Extinction coefficient

191,950 - 192,700 (calc based on 55 Y, 20 W, and 6 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

735..834

PF02369 Bacterial Ig-like domain (group 1)

PMID:19920124[6]

Domain

833..931

PF02369 Bacterial Ig-like domain (group 1)

PMID:19920124[6]

Domain

932..1033

PF02369 Bacterial Ig-like domain (group 1)

PMID:19920124[6]

Domain

1042..1137

PF02369 Bacterial Ig-like domain (group 1)

PMID:19920124[6]

Domain

1140..1237

PF02369 Bacterial Ig-like domain (group 1)

PMID:19920124[6]

Domain

1247..1350

PF02369 Bacterial Ig-like domain (group 1)

PMID:19920124[6]

Domain

1351..1450

PF02369 Bacterial Ig-like domain (group 1)

PMID:19920124[6]

Domain

1452..1553

PF02369 Bacterial Ig-like domain (group 1)

PMID:19920124[6]

Domain

1554..1655

PF02369 Bacterial Ig-like domain (group 1)

PMID:19920124[6]

Domain

1659..1754

PF02369 Bacterial Ig-like domain (group 1)

PMID:19920124[6]

Domain

1758..1854

PF02369 Bacterial Ig-like domain (group 1)

PMID:19920124[6]

Domain

1856..1950

PF02369 Bacterial Ig-like domain (group 1)

PMID:19920124[6]

Domain

1953..2053

PF02369 Bacterial Ig-like domain (group 1)

PMID:19920124[6]

Domain

139..419

PF11924 Protein of unknown function (DUF3442)

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yeeJ taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:145698281

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946498

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006563

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P76347

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7064

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13378

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946498

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003650

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3160

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  6. ↑ 6.00 6.01 6.02 6.03 6.04 6.05 6.06 6.07 6.08 6.09 6.10 6.11 6.12 6.13 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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