{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

On One Page

Quickview |

Gene |

Product(s) |

Expression|

Evolution |

References |

Quickview

[back to top]

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Standard Name	xdhD
Gene Synonym(s)	ECK2877, b2881, JW2849, ygfN^[1], ygfN
Product Desc.	putative oxidoreductase; possible component of selenate reductase with possible role in purine salvage^[2]^[3]; Component of putative selenate reductase^[3] Probable hypoxanthine dehydrogenase; mutation confers adenine sensitivity^[4]
Product Synonyms(s)	fused predicted xanthine/hypoxanthine oxidase: molybdopterin-binding subunit^[1], Fe-S binding subunit^[1], B2881^[2]^[1], YgfN^[2]^[1], XdhD^[2]^[1] , ECK2877, JW2849, ygfN, b2881
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): ygfM^[2]
Regulation/Activity
Quick Links
edit table

</protect> See Help:Quickview for help with entering information in the Quickview table. <protect></protect>

Notes

[back to top]

XdhD is a xanthine dehydrogenase homolog but probably has no xanthine dehydrogenase activity.^[4]

Gene

[back to top]

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css> <protect>

Nomenclature

[back to top]

See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name	xdhD
Mnemonic	Xanthine dehydrogenase
Synonyms	ECK2877, b2881, JW2849, ygfN^[1], ygfN
edit table

</protect>

Notes

Location(s) and DNA Sequence

[back to top]

<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain	Map location	Genome coordinates	Genome browsers	Sequence links
MG1655	65.08 minutes	MG1655: 3019338..3022208 <gbrowseImage> name=NC_000913:3019338..3022208 source=MG1655 preset=GeneLocation </gbrowseImage>	EcoCyc GBrowse(MG1655)	FASTA Dump EcoCyc Sequence Dump
REL606		NC_012967: 2907070..2909940 <gbrowseImage> name=NC_012967:2907070..2909940 source=REL606 preset=GeneLocation </gbrowseImage>	GBrowse (REL606)	FASTA Dump
BW2952		NC_012759: 2906486..2909356 <gbrowseImage> name=NC_012759:2906486..2909356 source=BW2952 preset=GeneLocation </gbrowseImage>	GBrowse (BW2952)	FASTA Dump
W3110		W3110: 3019972..3022842 <gbrowseImage> name=NC_007779:3019972..3022842 source=W3110 preset=GeneLocation </gbrowseImage>	GBrowse(W3110)	FASTA Dump
DH10B		DH10B: 3113208..3116078 <gbrowseImage> name=NC_010473:3113208..3116078 source=DH10B preset=GeneLocation </gbrowseImage>	GBrowse(DH10B)	FASTA Dump
edit table

</protect>

Notes

Sequence Features

[back to top]

See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type	Strain	Genomic Location	Evidence	Reference	Notes
edit table

Notes

Alleles and Phenotypes

[back to top]

See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele	Nt change(s)	AA change(s)	Reference	Availability
ΔxdhD (Keio:JW2849)	deletion	deletion	PMID:16738554	Shigen CGSC10213^[5]
ΔxdhD732::kan			PMID:16738554	CGSC:103412
edit table

Notes

Genetic Interactions

[back to top]

Interactor	Interaction	Allele	Score(s)	Reference(s)	Accessions	Notes
edit table

</protect>

Notes

Genetic Resources

[back to top]

See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource	Resource Type	Source	Notes/Reference
JW2849	Plasmid clone	Shigen	PMID:16769691 Status:Clone OK Primer 1:gccATCATCCACTTTACTTTAAATGGCGCG Primer 2:ccTATTTTTTCCAGCGCAGTGAGTATTTTC
6A1	Kohara Phage	Genobase	PMID:3038334
5B4	Kohara Phage	Genobase	PMID:3038334
recD1901::Tn10	Linked marker	CAG12135 = CGSC7429^[5]	est. P1 cotransduction: 2% ^[6]
speA210::Tn10	Linked marker	CAG12168 = CGSC7431^[5]	est. P1 cotransduction: 2% ^[6] Synonyms:zgd-210::Tn10, zgf-210::Tn10
edit table

Notes

Accessions in Other Databases

[back to top]

See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:G7500	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG13064	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120004063	Escherichia coli str. K-12 substr. MG1655
NCBI (EcoliWiki Page)	GeneID:949079	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB2876	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0009459	Escherichia coli str. K-12 substr. MG1655
edit table

Notes

Links

[back to top]

Name	URL	Comments
edit table

Product(s)

[back to top]

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name	XdhD
Synonyms	fused predicted xanthine/hypoxanthine oxidase: molybdopterin-binding subunit^[1], Fe-S binding subunit^[1], B2881^[2]^[1], YgfN^[2]^[1], XdhD^[2]^[1] , ECK2877, JW2849, ygfN, b2881
Product description	putative oxidoreductase; possible component of selenate reductase with possible role in purine salvage^[2]^[3]; Component of putative selenate reductase^[3] Probable hypoxanthine dehydrogenase; mutation confers adenine sensitivity^[4]
EC number (for enzymes)
edit table

Notes

Function

[back to top]

<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0005506	iron ion binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0408	F	Seeded from EcoCyc (v14.0)	complete
	GO:0006144	purine base metabolic process	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0659	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006166	purine ribonucleoside salvage	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0660	P	Seeded from EcoCyc (v14.0)	complete
	GO:0016491	oxidoreductase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000674	F	Seeded from EcoCyc (v14.0)	complete
	GO:0016491	oxidoreductase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR002888	F	Seeded from EcoCyc (v14.0)	complete
	GO:0016491	oxidoreductase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR008274	F	Seeded from EcoCyc (v14.0)	complete
	GO:0016491	oxidoreductase activity	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0560	F	Seeded from EcoCyc (v14.0)	complete
	GO:0030151	molybdenum ion binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0500	F	Seeded from EcoCyc (v14.0)	complete
	GO:0046872	metal ion binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR002888	F	Seeded from EcoCyc (v14.0)	complete
	GO:0046872	metal ion binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0479	F	Seeded from EcoCyc (v14.0)	complete
	GO:0051536	iron-sulfur cluster binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0411	F	Seeded from EcoCyc (v14.0)	complete
	GO:0051537	2 iron, 2 sulfur cluster binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0001	F	Seeded from EcoCyc (v14.0)	complete
	GO:0055114	oxidation reduction	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000674	P	Seeded from EcoCyc (v14.0)	complete
	GO:0055114	oxidation reduction	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR002888	P	Seeded from EcoCyc (v14.0)	complete
	GO:0055114	oxidation reduction	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR008274	P	Seeded from EcoCyc (v14.0)	complete
	GO:0055114	oxidation reduction	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0560	P	Seeded from EcoCyc (v14.0)	complete
	GO:0005575	cellular component	127.0.0.1 14:56, 17 February 2015 (CST)	ND: No biological Data available		C		Missing: reference
edit table

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
Protein	Subunits of putative selenate reductase	could be indirect
Protein	yghW		PMID:16606699	Experiment(s):EBI-1144187
Protein	valS		PMID:16606699	Experiment(s):EBI-1144187
Protein	ygfM		PMID:19402753	MALDI(Z-score):21.289090
edit table

</protect>

Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
edit table

Notes

Structure and Physical Properties

[back to top]

<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MIIHFTLNGA PQELTVNPGE NVQKLLFNMG MHSVRNSDDG FGFAGSDAII FNGNIVNASL LIAAQLEKAD IRTAESLGKW NELSLVQQAM VDVGVVQSGY NDPAAALIIT DLLDRIAAPT REEIDDALSG LFSRDAGWQQ YYQVIELAVA RKNNPQATID IAPTFRDDLE VIGKHYPKTD AAKMVQAKPC YVEDRVTADA CVIKMLRSPH AHALITHLDV SKAEALPGVV HVITHLNCPD IYYTPGGQSA PEPSPLDRRM FGKKMRHVGD RVAAVVAESE EIALEALKLI DVEYEVLKPV MSIDEAMAED APVVHDEPVV YVAGAPDTLE DDNSHAAQRG EHMIINFPIG SRPRKNIAAS IHGHIGDMDK GFADADVIIE RTYNSTQAQQ CPTETHICFT RMDGDRLVIH ASTQVPWHLR RQVARLVGMK QHKVHVIKER VGGGFGSKQD ILLEEVCAWA TCVTGRPVLF RYTREEEFIA NTSRHVAKVT VKLGAKKDGR LTAVKMDFRA NTGPYGNHSL TVPCNGPALS LPLYPCDNVD FQVTTYYSNI CPNGAYQGYG APKGNFAITM ALAELAEQLQ IDQLEIIERN RVHEGQELKI LGAIGEGKAP TSVPSAASCA LEEILRQGRE MIQWSSPKPQ NGDWHIGRGV AIIMQKSGIP DIDQANCMIK LESDGTFIVH SGGADIGTGL DTVVTKLAAE VLHCPPQDVH VISGDTDHAL FDKGAYASSG TCFSGNAARL AAENLREKIL FHGAQMLGEP VADVQLATPG VVRGKKGEVS FGDIAHKGET GTGFGSLVGT GSYITPDFAF PYGANFAEVA VNTRTGEIRL DKFYALLDCG TPVNPELALG QIYGATLRAI GHSMSEEIIY DAEGHPLTRD LRSYGAPKIG DIPRDFRAVL VPSDDKVGPF GAKSISEIGV NGAAPAIATA IHDACGIWLR EWHFTPEKIL TALEKI
Length	956
Mol. Wt	103.518 kDa
pI	5.7 (calculated)
Extinction coefficient	79,760 - 81,760 (calc based on 24 Y, 8 W, and 16 C residues)
edit table

Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	References
Domain	186..298	PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain	PMID:19920124
Domain	351..893	PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase	PMID:19920124
Domain	73..147	PF01799 [2Fe-2S binding domain]	PMID:19920124
edit table

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=xdhD taxon=562,83333 </beststructure>

Models

View models at:

edit table

</protect>

Structure figures

</protect>

Notes

Gene Product Resources

[back to top]

See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
edit table

Notes

Accessions in Other Databases

[back to top]

See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:16130783	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:949079	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0009459	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:Q46814	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:G7500	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG13064	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:949079	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120004063	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB2876	Escherichia coli str. K-12 substr. MG1655
edit table

Notes

Links

[back to top]

Name	URL	Comments
edit table

Expression

[back to top]

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Cellular Levels

[back to top]

See Help:Cellular levels

Molecule	Organism or Strain	Value	Units	Experimental Conditions	Assay used	Notes	Reference(s)
Protein	E. coli K-12 MC4100	9.79E+01	molecules/cell	Medium: median data from rich and minimal media Temperature (°C): 37 Doubling time (min): Growth Rate(min): Growth phase: other:	emPAI		PMID:18304323
Protein	E. coli K-12 MG1655	11	molecules/cell/generation	Medium: MOPS Complete Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
Protein	E. coli K-12 MG1655	8	molecules/cell/generation	Medium: MOPS Minimal Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
Protein	E. coli K-12 MG1655	0^a	molecules/cell/generation	Medium: MOPS Complete without Methionine Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling	Low confidence in the sequencing data set.	PMID: 24766808
edit table

Notes

Transcription and Transcriptional Regulation

[back to top]

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
ygfM
edit table

Figure courtesy of RegulonDB

</protect>

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

[back to top]

<protect><gbrowseImage> name=NC_000913:3019318..3019358 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

</protect>

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

[back to top]

<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name	Mutation	Phenotype	Reference
edit table

Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type	Reference	Notes
microarray	GEO Profiles:b2881 (EcoliWiki Page)	NCBI GEO profiles for xdhD
microarray	GenExpDB:b2881 (EcoliWiki Page)	Summary of data for xdhD from multiple microarray studies
edit table

Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name	Resource Type	Description	Source	Notes
edit table

Notes

Accessions Related to xdhD Expression

[back to top]

See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:G7500	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB2876	Escherichia coli str. K-12 substr. MG1655
EcoliGenExpDB (EcoliWiki Page)	EcoliGenExpDB:b2881
EcoGene	EcoGene:EG13064	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120004063	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0009459	Escherichia coli str. K-12 substr. MG1655
edit table

Notes

Links

[back to top]

Name	URL	Comments
edit table

Evolution

[back to top]

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Homologs in Other Organisms

[back to top]

See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism	Homologs (Statistics)	Comments
Anopheles gambiae	ENSANGP00000025172 (score: 1.000; bootstrap: 100%) ENSANGP00000020593 (score: 0.150) ENSANGP00000007280 (score: 0.121) ENSANGP00000021704 (score: 0.119)	From Inparanoid:20070104
Apis mellifera	ENSAPMP00000009446 (score: 1.000; bootstrap: 100%) ENSAPMP00000023744 (score: 0.145)	From Inparanoid:20070104
Arabidopsis thaliana	AT4G34890 (score: 1.000; bootstrap: 100%) AT3G43600 (score: 1.000; bootstrap: 100%) AT4G34900 (score: 0.927) AT5G20960 (score: 0.635) AT2G27150 (score: 0.587) AT1G04580 (score: 0.581)	From Inparanoid:20070104
Bos taurus	ENSBTAP00000012827 (score: 1.000; bootstrap: 100%) ENSBTAP00000016620 (score: 1.000; bootstrap: 100%) ENSBTAP00000038143 (score: 0.562) ENSBTAP00000038141 (score: 0.156)	From Inparanoid:20070104
Caenorhabditis briggsae	WBGene00040345 (score: 1.000; bootstrap: 100%) WBGene00038477 (score: 0.196) WBGene00038476 (score: 0.137)	From Inparanoid:20070104
Caenorhabditis elegans	WBGene00010083 (score: 1.000; bootstrap: 100%) WBGene00015057 (score: 0.182) WBGene00017487 (score: 0.170)	From Inparanoid:20070104
Canis familiaris	ENSCAFP00000008465 (score: 1.000; bootstrap: 100%) ENSCAFP00000017364 (score: 0.428)	From Inparanoid:20070104
Ciona intestinalis	ENSCINP00000018788 (score: 1.000; bootstrap: 100%) ENSCINP00000012385 (score: 1.000; bootstrap: 100%) ENSCINP00000000654 (score: 0.135)	From Inparanoid:20070104
Dictyostelium discoideum	DDB0230176 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Drosophila melanogaster	FBgn0003308 (score: 1.000; bootstrap: 100%) FBgn0038347 (score: 0.139) FBgn0038349 (score: 0.128) FBgn0038350 (score: 0.125) FBgn0038348 (score: 0.121)	From Inparanoid:20070104
Drosophila pseudoobscura	GA20500-PA (score: 1.000; bootstrap: 100%) GA14972-PA (score: 0.135) GA19318-PA (score: 0.120) GA14970-PA (score: 0.117) GA14971-PA (score: 0.114)	From Inparanoid:20070104
Gallus gallus	ENSGALP00000014144 (score: 1.000; bootstrap: 100%) ENSGALP00000013312 (score: 0.494)	From Inparanoid:20070104
Homo sapiens	ENSP00000289041 (score: 1.000; bootstrap: 100%) ENSP00000260930 (score: 0.444)	From Inparanoid:20070104
Macaca mulatta	ENSMMUP00000000757 (score: 1.000; bootstrap: 100%) ENSMMUP00000028881 (score: 0.459) ENSMMUP00000007691 (score: 0.343)	From Inparanoid:20070104
Monodelphis domestica	ENSMODP00000019349 (score: 1.000; bootstrap: 100%) ENSMODP00000015626 (score: 1.000; bootstrap: 100%) ENSMODP00000015675 (score: 0.597) ENSMODP00000018747 (score: 0.586) ENSMODP00000015728 (score: 0.532)	From Inparanoid:20070104
Mus musculus	MGI:98973 (score: 1.000; bootstrap: 100%) MGI:3529596 (score: 1.000; bootstrap: 100%) MGI:1918974 (score: 0.645) MGI:1919122 (score: 0.625) MGI:88035 (score: 0.594)	From Inparanoid:20070104
Oryza gramene	Q6AUV1 (score: 1.000; bootstrap: 100%) O23887 (score: 0.137) Q8W2P4 (score: 0.136) Q7XH05 (score: 0.136) O23888 (score: 0.134) Q852M1 (score: 0.130) Q852M2 (score: 0.126) Q6Z351 (score: 0.123) Q8LHR9 (score: 0.119)	From Inparanoid:20070104
Pan troglodytes	ENSPTRP00000020275 (score: 1.000; bootstrap: 100%) ENSPTRP00000021853 (score: 0.446)	From Inparanoid:20070104
Rattus norvegicus	ENSRNOP00000009634 (score: 1.000; bootstrap: 100%) ENSRNOP00000042328 (score: 1.000; bootstrap: 100%) ENSRNOP00000049807 (score: 0.594) ENSRNOP00000021389 (score: 0.557)	From Inparanoid:20070104
Takifugu rubripes	NEWSINFRUP00000173814 (score: 1.000; bootstrap: 100%) NEWSINFRUP00000180992 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Tetraodon nigroviridis	GSTENP00031889001 (score: 1.000; bootstrap: 100%) GSTENP00012569001 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
E. coli O157	Z4220	From ECOO157CYC
edit table

Do-It-Yourself Web Tools

Notes

Families

[back to top]

See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
Pfam (EcoliWiki Page)	PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase
Pfam (EcoliWiki Page)	PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
Pfam (EcoliWiki Page)	PF01799 [2Fe-2S binding domain]
Superfamily (EcoliWiki Page)	SUPERFAMILY:47741
Superfamily (EcoliWiki Page)	SUPERFAMILY:54292
Superfamily (EcoliWiki Page)	SUPERFAMILY:54665
Superfamily (EcoliWiki Page)	SUPERFAMILY:56003
EcoCyc	EcoCyc:G7500	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG13064	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120004063	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB2876	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0009459	Escherichia coli str. K-12 substr. MG1655
edit table

Notes

Links

[back to top]

Name	URL	Comments
edit table

References

[back to top]

See Help:References for how to manage references in EcoliWiki.

↑ ^1.00 ^1.01 ^1.02 ^1.03 ^1.04 ^1.05 ^1.06 ^1.07 ^1.08 ^1.09 ^1.10 ^1.11 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 ^2.6 ^2.7 ^2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 ^3.2 ^3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 ^4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ ^5.0 ^5.1 ^5.2 CGSC: The Coli Genetics Stock Center
↑ ^6.0 ^6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

xdhD:On One Page

Quickview

Notes

Gene

Nomenclature

Notes

Location(s) and DNA Sequence

Notes

Sequence Features

Notes

Alleles and Phenotypes

Notes

Genetic Interactions

Notes

Genetic Resources

Notes

Accessions in Other Databases

Notes

Links

Product(s)

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

Expression

Overview

Cellular Levels

Notes

Transcription and Transcriptional Regulation

Notes

Translation and Regulation of Translation

Notes

Turnover and Regulation of Turnover

Notes

Experimental

Notes

Accessions Related to xdhD Expression

Notes

Links

Evolution

Homologs in Other Organisms

Do-It-Yourself Web Tools

Notes

Families

Notes

Links

References

Categories

Navigation menu

Search