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On One Page

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Gene |

Product(s) |

Expression|

Evolution |

References |

Quickview

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Standard Name	ugpC
Gene Synonym(s)	ECK3434, b3450, JW3415^[1], JW3415
Product Desc.	UgpC^[2]^[3]; Component of glycerol-3-P ABC transporter^[2]^[3] sn-Glycerol-3-phosphate transport system, ABC family permease^[4]
Product Synonyms(s)	glycerol-3-phosphate transporter subunit^[1], ATP-binding component of ABC superfamily^[1], B3450^[2]^[1], UgpC^[2]^[1] , ECK3434, JW3415, b3450
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): ugpBAECQ^[2]
Regulation/Activity
Quick Links
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Notes

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Pho regulon.^[4]

Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name	ugpC
Mnemonic	Uptake glycerol phosphate
Synonyms	ECK3434, b3450, JW3415^[1], JW3415
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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain	Map location	Genome coordinates	Genome browsers	Sequence links
MG1655	77.29 minutes	MG1655: 3587203..3586133 <gbrowseImage> name=NC_000913:3586133..3587203 source=MG1655 preset=GeneLocation </gbrowseImage>	EcoCyc GBrowse(MG1655)	FASTA Dump EcoCyc Sequence Dump
REL606		NC_012967: 3519856..3518786 <gbrowseImage> name=NC_012967:3518786..3519856 source=REL606 preset=GeneLocation </gbrowseImage>	GBrowse (REL606)	FASTA Dump
BW2952		NC_012759: 3474627..3475697 <gbrowseImage> name=NC_012759:3474627..3475697 source=BW2952 preset=GeneLocation </gbrowseImage>	GBrowse (BW2952)	FASTA Dump
W3110		W3110: 4051235..4052305 <gbrowseImage> name=NC_007779:4051235..4052305 source=W3110 preset=GeneLocation </gbrowseImage>	GBrowse(W3110)	FASTA Dump
DH10B		DH10B: 3684948..3683878 <gbrowseImage> name=NC_010473:3683878..3684948 source=DH10B preset=GeneLocation </gbrowseImage>	GBrowse(DH10B)	FASTA Dump
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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type	Strain	Genomic Location	Evidence	Reference	Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele	Nt change(s)	AA change(s)	Reference	Availability	Comments
ΔugpC (Keio:JW3415)	deletion	deletion	PMID:16738554	Shigen CGSC10539^[5]
ugpC::Tn5KAN-I-SceI (FB21213)	Insertion at nt 632 in Plus orientation		PMID:15262929	E. coli Genome Project:FB21213	does not contain pKD46
ΔugpC780::kan			PMID:16738554	CGSC:103284
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Notes

Genetic Interactions

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Interactor	Interaction	Allele	Score(s)	Reference(s)	Accessions	Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource	Resource Type	Source	Notes/Reference
JW3415	Plasmid clone	Shigen	PMID:16769691 Status:Clone OK Primer 1:GCCGCAGGACTGAAATTACAGGC Primer 2:CCTACTCGTTGTCCTGTTTCACC
5B10	Kohara Phage	Genobase	PMID:3038334
10F5	Kohara Phage	Genobase	PMID:3038334
glgP721::Tn10	Linked marker	CAG18638 = CGSC7451^[5]	est. P1 cotransduction: 43% ^[6] Synonyms:zhg-3086::Tn10, zhh-21::Tn10
zhg-50::Tn10	Linked marker	CAG18450 = CGSC7450^[5]	est. P1 cotransduction: 85% ^[6] Synonyms:zhf-50::Tn10, zhf-5::Tn10
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:EG11048	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG11048	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120001037	Escherichia coli str. K-12 substr. MG1655
NCBI (EcoliWiki Page)	GeneID:947953	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB1041	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0011266	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name	UgpC
Synonyms	glycerol-3-phosphate transporter subunit^[1], ATP-binding component of ABC superfamily^[1], B3450^[2]^[1], UgpC^[2]^[1] , ECK3434, JW3415, b3450
Product description	UgpC^[2]^[3]; Component of glycerol-3-P ABC transporter^[2]^[3] sn-Glycerol-3-phosphate transport system, ABC family permease^[4]
EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0000166	nucleotide binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR003593	F	Seeded from EcoCyc (v14.0)	complete
	GO:0000166	nucleotide binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0547	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005524	ATP binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR003439	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005524	ATP binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR008995	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005524	ATP binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR013611	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005524	ATP binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR017871	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005524	ATP binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0067	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005886	plasma membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0997	C	Seeded from EcoCyc (v14.0)	complete
	GO:0005886	plasma membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-1003	C	Seeded from EcoCyc (v14.0)	complete
	GO:0015430	glycerol-3-phosphate-transporting ATPase activity	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_01727	F	Seeded from EcoCyc (v14.0)	complete
	GO:0015430	glycerol-3-phosphate-transporting ATPase activity	GOA:spec GO_REF:0000003	IEA: Inferred from Electronic Annotation	EC:3.6.3.20	F	Seeded from EcoCyc (v14.0)	complete
	GO:0015430	glycerol-3-phosphate-transporting ATPase activity	PMID:3062310	ISS: Inferred from Sequence or Structural Similarity	EcoCyc:MALK-MONOMER	F	Seeded from EcoCyc (v14.0)	complete
	GO:0015794	glycerol-3-phosphate transport	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_01727	P	Seeded from EcoCyc (v14.0)	complete
	GO:0016020	membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0472	C	Seeded from EcoCyc (v14.0)	complete
	GO:0016787	hydrolase activity	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0378	F	Seeded from EcoCyc (v14.0)	complete
	GO:0016820	hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR008995	F	Seeded from EcoCyc (v14.0)	complete
	GO:0016820	hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR013611	F	Seeded from EcoCyc (v14.0)	complete
	GO:0016887	ATPase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR003439	F	Seeded from EcoCyc (v14.0)	complete
	GO:0016887	ATPase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR017871	F	Seeded from EcoCyc (v14.0)	complete
	GO:0017111	nucleoside-triphosphatase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR003593	F	Seeded from EcoCyc (v14.0)	complete
	GO:0019898	extrinsic to membrane	GO_REF:0000023	IEA: Inferred from Electronic Annotation	SP_SL:SL-9903	C	Seeded from EcoCyc (v14.0)	complete
	GO:0043190	ATP-binding cassette (ABC) transporter complex	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR008995	C	Seeded from EcoCyc (v14.0)	complete
	GO:0043190	ATP-binding cassette (ABC) transporter complex	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR013611	C	Seeded from EcoCyc (v14.0)	complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
Protein	Subunits of glycerol-3-P ABC transporter	could be indirect
Protein	yafC		PMID:16606699	Experiment(s):EBI-1145919
Protein	ydcS		PMID:16606699	Experiment(s):EBI-1145919
Protein	argI		PMID:16606699	Experiment(s):EBI-1145919
Protein	yfbQ		PMID:16606699	Experiment(s):EBI-1145919
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
cytoplasm			From EcoCyc^[3]
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MPSCAAWSIV RNKMAGLKLQ AVTKSWDGKT QVIKPLTLDV ADGEFIVMVG PSGCGKSTLL RMVAGLERVT EGDIWINDQR VTEMEPKDRG IAMVFQNYAL YPHMSVEENM AWGLKIRGMG KQQIAERVKE AARILELDGL LKRRPRELSG GQRQRVAMGR AIVRDPAVFL FDEPLSNLDA KLRVQMRLEL QQLHRRLKTT SLYVTHDQVE AMTLAQRVMV MNGGVAEQIG TPVEVYEKPA SLFVASFIGS PAMNLLTGRV NNEGTHFELD GGIELPLNGG YRQYAGRKMT LGIRPEHIAL SSQAEGGVPM VMDTLEILGA DNLAHGRWGE QKLVVRLAHQ ERPTAGSTLW LHLAENQLHL FDGETGQRV
Length	369
Mol. Wt	40.968 kDa
pI	8.6 (calculated)
Extinction coefficient	41,940 - 42,190 (calc based on 6 Y, 6 W, and 2 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	References
Domain	44..163	PF00005 ABC transporter	PMID:19920124
Domain	278..348	PF08402 TOBE domain	PMID:19920124
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ugpC taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:90111593	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:947953	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0011266	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P10907	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:EG11048	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG11048	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:947953	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120001037	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB1041	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Cellular Levels

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See Help:Cellular levels

Molecule	Organism or Strain	Value	Units	Experimental Conditions	Assay used	Notes	Reference(s)
Protein	E. coli K-12 MG1655	69	molecules/cell/generation	Medium: MOPS Complete Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
Protein	E. coli K-12 MG1655	125	molecules/cell/generation	Medium: MOPS Minimal Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
Protein	E. coli K-12 MG1655	27^a	molecules/cell/generation	Medium: MOPS Complete without Methionine Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling	Low confidence in the sequencing data set.	PMID: 24766808
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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
ugpBAECQ
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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:3587183..3587223 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name	Mutation	Phenotype	Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type	Reference	Notes
microarray	GEO Profiles:b3450 (EcoliWiki Page)	NCBI GEO profiles for ugpC
microarray	GenExpDB:b3450 (EcoliWiki Page)	Summary of data for ugpC from multiple microarray studies
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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name	Resource Type	Description	Source	Notes
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Notes

Accessions Related to ugpC Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:EG11048	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB1041	Escherichia coli str. K-12 substr. MG1655
EcoliGenExpDB (EcoliWiki Page)	EcoliGenExpDB:b3450
EcoGene	EcoGene:EG11048	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120001037	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0011266	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism	Homologs (Statistics)	Comments
Anopheles gambiae	ENSANGP00000014654 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Drosophila melanogaster	FBgn0031362 (score: 1.000; bootstrap: 69%) FBgn0032167 (score: 0.229) FBgn0025683 (score: 0.225) FBgn0020762 (score: 0.211) FBgn0031516 (score: 0.208) FBgn0031220 (score: 0.184) FBgn0052091 (score: 0.175) FBgn0031449 (score: 0.159) FBgn0031515 (score: 0.153) FBgn0003996 (score: 0.077) FBgn0003515 (score: 0.074) FBgn0020445 (score: 0.059)	From Inparanoid:20070104
Drosophila pseudoobscura	GA14594-PA (score: 1.000; bootstrap: 57%) GA16356-PA (score: 0.236) GA15545-PA (score: 0.235) GA19180-PA (score: 0.225) GA18458-PA (score: 0.185) GA16671-PA (score: 0.176) GA16397-PA (score: 0.154) GA15454-PA (score: 0.057)	From Inparanoid:20070104
Takifugu rubripes	NEWSINFRUP00000130824 (score: 1.000; bootstrap: 57%) NEWSINFRUP00000130826 (score: 0.180) NEWSINFRUP00000167567 (score: 0.137) NEWSINFRUP00000182359 (score: 0.125) NEWSINFRUP00000177047 (score: 0.125) NEWSINFRUP00000168237 (score: 0.097) NEWSINFRUP00000171182 (score: 0.092)	From Inparanoid:20070104
Tetraodon nigroviridis	GSTENP00014344001 (score: 1.000; bootstrap: 57%) GSTENP00014343001 (score: 0.105) GSTENP00020877001 (score: 0.101) GSTENP00038511001 (score: 0.091) GSTENP00014937001 (score: 0.051)	From Inparanoid:20070104
Xenopus tropicalis	ENSXETP00000042210 (score: 1.000; bootstrap: 89%) ENSXETP00000041384 (score: 0.625)	From Inparanoid:20070104
E. coli O157	UGPC	From ECOO157CYC
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Do-It-Yourself Web Tools

Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
Pfam (EcoliWiki Page)	PF00005 ABC transporter
Superfamily (EcoliWiki Page)	SUPERFAMILY:50331
Superfamily (EcoliWiki Page)	SUPERFAMILY:52540
Panther (EcoliWiki Page)	PTHR24220:SF42
Pfam (EcoliWiki Page)	PF08402 TOBE domain
EcoCyc	EcoCyc:EG11048	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG11048	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120001037	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB1041	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0011266	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 ^1.7 ^1.8 ^1.9 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 ^2.6 ^2.7 ^2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 ^3.2 ^3.3 ^3.4 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 ^4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ ^5.0 ^5.1 ^5.2 CGSC: The Coli Genetics Stock Center
↑ ^6.0 ^6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

ugpC:On One Page

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Notes

Gene

Nomenclature

Notes

Location(s) and DNA Sequence

Notes

Sequence Features

Notes

Alleles and Phenotypes

Notes

Genetic Interactions

Notes

Genetic Resources

Notes

Accessions in Other Databases

Notes

Links

Product(s)

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

Expression

Overview

Cellular Levels

Notes

Transcription and Transcriptional Regulation

Notes

Translation and Regulation of Translation

Notes

Turnover and Regulation of Turnover

Notes

Experimental

Notes

Accessions Related to ugpC Expression

Notes

Links

Evolution

Homologs in Other Organisms

Do-It-Yourself Web Tools

Notes

Families

Notes

Links

References

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