thrS:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

thrS

Gene Synonym(s)

ECK1717, b1719, JW1709[1], JW1709

Product Desc.

threonyl-tRNA synthetase[2][3];

Component of threonyl-tRNA synthetase[2][3]

Threonine--tRNA ligase, autogenously regulated; binds Zn(II)[4]

Product Synonyms(s)

threonyl-tRNA synthetase[1], B1719[2][1], ThrS[2][1] , ECK1717, JW1709, b1719

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): thrS-infC-rpmI-rplT[2][3]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

thrS

Mnemonic

Threonine

Synonyms

ECK1717, b1719, JW1709[1], JW1709

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

38.77 minutes 

MG1655: 1800594..1798666
<gbrowseImage> name=NC_000913:1798666..1800594 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 1779837..1777909
<gbrowseImage> name=NC_012967:1777909..1779837 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 1690725..1692653
<gbrowseImage> name=NC_012759:1690725..1692653 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 1804284..1802356
<gbrowseImage> name=NC_007779:1802356..1804284 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 1891165..1889237
<gbrowseImage> name=NC_010473:1889237..1891165 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

thrSC334S

C334S

Activity very strongly affected

seeded from UniProt:P0A8M3

thrSH385A,N

H385A,N

Activity very strongly affected

seeded from UniProt:P0A8M3

thrSH511A,N

H511A,N

Activity very strongly affected

seeded from UniProt:P0A8M3

thrS1029

CGSC:7393


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Notes

Genetic Interactions

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<protect>

Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW1709

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCCCTGTTATAACTCTTCCTGA

Primer 2:CCTTCCTCCAATTGTTTAAGACT

20F5

Kohara Phage

Genobase

PMID:3038334

20H8

Kohara Phage

Genobase

PMID:3038334

8A4

Kohara Phage

Genobase

PMID:3038334

zdi-925::Tn10

Linked marker

CAG12151 = CGSC7385[5]

est. P1 cotransduction: 45% [6]
Synonyms:zdh-925::Tn10

zdj-276::Tn10

Linked marker

CAG18464 = CGSC7387[5]

est. P1 cotransduction: 25% [6]
Synonyms:zdi-276::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG11001

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11001

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000990

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:946222

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0994

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005736

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

ThrS

Synonyms

threonyl-tRNA synthetase[1], B1719[2][1], ThrS[2][1] , ECK1717, JW1709, b1719

Product description

threonyl-tRNA synthetase[2][3];

Component of threonyl-tRNA synthetase[2][3]

Threonine--tRNA ligase, autogenously regulated; binds Zn(II)[4]

EC number (for enzymes) 
6.1.1.3[1]
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0005524

ATP binding

PMID:10319817

IDA: Inferred from Direct Assay

F

complete

GO:0003723

RNA binding

PMID:10319817

IDA: Inferred from Direct Assay

F

complete

GO:0008270

zinc ion binding

PMID:10319817

IMP: Inferred from Mutant Phenotype

F

complete

GO:0005515

protein binding

PMID:10319817

IPI: Inferred from Physical Interaction

EcoliWiki:thrS

F

ThrRS is a homodimer of thrS gene products.

complete

GO:0000166

nucleotide binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc (v14.0)

complete

GO:0006435

threonyl-tRNA aminoacylation

PMID:330505

IDA: Inferred from Direct Assay

P

complete

GO:0003723

RNA binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0694

F

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

PMID:330505

IDA: Inferred from Direct Assay

C

complete

GO:0004812

aminoacyl-tRNA ligase activity

PMID:330505

IDA: Inferred from Direct Assay

F

complete

GO:0004829

threonine-tRNA ligase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018158

F

Seeded from EcoCyc (v14.0)

complete

GO:0043039

tRNA aminoacylation

PMID:330505

IDA: Inferred from Direct Assay

P

complete

GO:0006418

tRNA aminoacylation for protein translation

PMID:330505

IDA: Inferred from Direct Assay

P

complete

GO:0004829

threonine-tRNA ligase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:6.1.1.3

F

Seeded from EcoCyc (v14.0)

complete

GO:0005515

protein binding

PMID:10319817

IPI: Inferred from Physical Interaction

EcoliWiki:thrS

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00184

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002314

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002320

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004154

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006195

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR012947

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018158

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0067

F

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00184

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002314

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002320

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR012947

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018158

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0086

C

Seeded from EcoCyc (v14.0)

complete

GO:0006435

threonyl-tRNA aminoacylation

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00184

P

Seeded from EcoCyc (v14.0)

complete

GO:0006435

threonyl-tRNA aminoacylation

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002320

P

Seeded from EcoCyc (v14.0)

complete

GO:0006435

threonyl-tRNA aminoacylation

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018158

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of threonyl-tRNA synthetase

could be indirect

Protein

rplA

PMID:15690043

Experiment(s):EBI-879795, EBI-884548

Protein

dnaK

PMID:15690043

Experiment(s):EBI-884548

Protein

eno

PMID:15690043

Experiment(s):EBI-884548

Protein

ibpA

PMID:15690043

Experiment(s):EBI-884548

Protein

rpe

PMID:15690043

Experiment(s):EBI-884548

Protein

rplC

PMID:15690043

Experiment(s):EBI-884548

Protein

rplI

PMID:15690043

Experiment(s):EBI-884548

Protein

rplM

PMID:15690043

Experiment(s):EBI-884548

Protein

rplS

PMID:15690043

Experiment(s):EBI-884548

Protein

rplV

PMID:15690043

Experiment(s):EBI-884548

Protein

rpsA

PMID:15690043

Experiment(s):EBI-884548

Protein

rpsB

PMID:15690043

Experiment(s):EBI-884548

Protein

rpsE

PMID:15690043

Experiment(s):EBI-884548

Protein

rpsF

PMID:15690043

Experiment(s):EBI-884548

Protein

rpsG

PMID:15690043

Experiment(s):EBI-884548

Protein

rpsJ

PMID:15690043

Experiment(s):EBI-884548

Protein

rpsM

PMID:15690043

Experiment(s):EBI-884548

Protein

rpsN

PMID:15690043

Experiment(s):EBI-884548

Protein

rpsT

PMID:15690043

Experiment(s):EBI-884548

Protein

wcaB

PMID:15690043

Experiment(s):EBI-884548

Protein

yhbY

PMID:15690043

Experiment(s):EBI-884548

Protein

yicC

PMID:15690043

Experiment(s):EBI-884548

Protein

recR

PMID:16606699

Experiment(s):EBI-1140596

Protein

nadE

PMID:16606699

Experiment(s):EBI-1140596

Protein

rpsC

PMID:16606699

Experiment(s):EBI-1140596

Protein

yggM

PMID:16606699

Experiment(s):EBI-1140596

Protein

rpsM

PMID:19402753

LCMS(ID Probability):99.0 MALDI(Z-score):3.070866

Protein

rplS

PMID:19402753

LCMS(ID Probability):99.0 MALDI(Z-score):3.739354

Protein

rplA

PMID:19402753

LCMS(ID Probability):99.0 MALDI(Z-score):10.739046

Protein

eno

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpe

PMID:19402753

LCMS(ID Probability):99.6

Protein

ibpA

PMID:19402753

LCMS(ID Probability):99.6

Protein

yicC

PMID:19402753

LCMS(ID Probability):99.6

Protein

wcaB

PMID:19402753

LCMS(ID Probability):99.0

Small Molecule

Borrelidin

PMID:330505

See figure 4.

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MPVITLPDGS QRHYDHAVSP MDVALDIGPG LAKACIAGRV NGELVDACDL IENDAQLSII
TAKDEEGLEI IRHSCAHLLG HAIKQLWPHT KMAIGPVIDN GFYYDVDLDR TLTQEDVEAL
EKRMHELAEK NYDVIKKKVS WHEARETFAN RGESYKVSIL DENIAHDDKP GLYFHEEYVD
MCRGPHVPNM RFCHHFKLMK TAGAYWRGDS NNKMLQRIYG TAWADKKALN AYLQRLEEAA
KRDHRKIGKQ LDLYHMQEEA PGMVFWHNDG WTIFRELEVF VRSKLKEYQY QEVKGPFMMD
RVLWEKTGHW DNYKDAMFTT SSENREYCIK PMNCPGHVQI FNQGLKSYRD LPLRMAEFGS
CHRNEPSGSL HGLMRVRGFT QDDAHIFCTE EQIRDEVNGC IRLVYDMYST FGFEKIVVKL
STRPEKRIGS DEMWDRAEAD LAVALEENNI PFEYQLGEGA FYGPKIEFTL YDCLDRAWQC
GTVQLDFSLP SRLSASYVGE DNERKVPVMI HRAILGSMER FIGILTEEFA GFFPTWLAPV
QVVIMNITDS QSEYVNELTQ KLSNAGIRVK ADLRNEKIGF KIREHTLRRV PYMLVCGDKE
VESGKVAVRT RRGKDLGSMD VNEVIEKLQQ EIRSRSLKQL EE
Length

642

Mol. Wt

74.014 kDa

pI

6.1 (calculated)

Extinction coefficient

96,260 - 97,885 (calc based on 24 Y, 11 W, and 13 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

541..631

PF03129 Anticodon binding domain

PMID:19920124

Domain

1..61

PF02824 TGS domain

PMID:19920124

Domain

273..440

PF00587 tRNA synthetase class II core domain (G, H, P, S and T)

PMID:19920124

Domain

171..219

PF07973 Threonyl and Alanyl tRNA synthetase second additional domain

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=thrS taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129675

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946222

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005736

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A8M3

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11001

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11001

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946222

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000990

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0994

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

9.50E+02

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

Ecoli K-12

783.577+/-6.293

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.8248+/-0.11122

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by FISH

PMID:20671182

mRNA

Ecoli K-12

0.59439834

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 MG1655

12096

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

2984

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

8569

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

thrS-infC-rpmI-rplT

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:1800574..1800614 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

</protect>

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b1719 (EcoliWiki Page)

NCBI GEO profiles for thrS

microarray

GenExpDB:b1719 (EcoliWiki Page)

Summary of data for thrS from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to thrS Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG11001

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0994

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b1719

EcoGene

EcoGene:EG11001

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000990

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005736

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000021424 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000026510 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT2G04842 (score: 1.000; bootstrap: 77%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000018947 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000010070 (score: 0.508)
  • ENSBTAP00000004948 (score: 0.296)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00026066 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00006617 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000015421 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000027835 (score: 0.518)
  • ENSCAFP00000017625 (score: 0.285)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000008915 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-041010-218 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-041010-218 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0231248 (score: 1.000; bootstrap: 100%)
  • DDB0231249 (score: 0.122)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0027081 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA18821-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000006337 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000005194 (score: 0.525)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000265112 (score: 1.000; bootstrap: 100%)
  • ENSP00000338093 (score: 0.612)
  • ENSP00000271635 (score: 0.311)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000021323 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000000380 (score: 0.400)
  • ENSMMUP00000008230 (score: 0.324)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000025526 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000014968 (score: 0.662)
  • ENSMODP00000023437 (score: 0.313)

From Inparanoid:20070104

Mus musculus

  • MGI:106314 (score: 1.000; bootstrap: 100%)
  • MGI:2444486 (score: 0.598)
  • MGI:1919057 (score: 0.316)

From Inparanoid:20070104

Oryza gramene

  • Q6ER90 (score: 1.000; bootstrap: 64%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000028765 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000012839 (score: 0.607)
  • ENSPTRP00000002129 (score: 0.266)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000025804 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000033052 (score: 0.593)
  • ENSRNOP00000042196 (score: 0.291)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YIL078W (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC25H22 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000175918 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000147450 (score: 0.648)
  • NEWSINFRUP00000131907 (score: 0.223)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00022436001 (score: 1.000; bootstrap: 100%)
  • GSTENP00029635001 (score: 0.433)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000009419 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

THRS

From SHIGELLACYC

E. coli O157

THRS

From ECOO157CYC

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Do-It-Yourself Web Tools

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF03129 Anticodon binding domain

Pfam (EcoliWiki Page)

PF02824 TGS domain

Panther (EcoliWiki Page)

PTHR11451:SF5

Superfamily (EcoliWiki Page)

SUPERFAMILY:52954

Superfamily (EcoliWiki Page)

SUPERFAMILY:55186

Superfamily (EcoliWiki Page)

SUPERFAMILY:55681

Superfamily (EcoliWiki Page)

SUPERFAMILY:81271

Pfam (EcoliWiki Page)

PF00587 tRNA synthetase class II core domain (G, H, P, S and T)

Pfam (EcoliWiki Page)

PF07973 Threonyl and Alanyl tRNA synthetase second additional domain

EcoCyc

EcoCyc:EG11001

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11001

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000990

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0994

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005736

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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