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Standard Name	ssuC
Gene Synonym(s)	ECK0925, b0934, JW5121, ycbM^[1], ycbM
Product Desc.	SsuC^[2]^[3]; Component of YcbE/YcbM ABC transporter^[2]; aliphatic sulfonate ABC transporter^[3] Putative aliphatic sulphonate transport membrane component; sulfur starvation inducible; Cbl regulon^[4]
Product Synonyms(s)	alkanesulfonate transporter subunit^[1], membrane component of ABC superfamily^[1], YcbM^[2]^[1], SsuC^[2]^[1], B0934^[2]^[1] , ECK0925, JW5121, ycbM, b0934
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): ssuEADCB^[2]
Regulation/Activity
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Notes

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Topology mapped using protein fusions.^[4]

Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name	ssuC
Mnemonic	Sulfonate-sulfur utilization
Synonyms	ECK0925, b0934, JW5121, ycbM^[1], ycbM
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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain	Map location	Genome coordinates	Genome browsers	Sequence links
MG1655	21.41 minutes	MG1655: 994055..993264 <gbrowseImage> name=NC_000913:993264..994055 source=MG1655 preset=GeneLocation </gbrowseImage>	EcoCyc GBrowse(MG1655)	FASTA Dump EcoCyc Sequence Dump
REL606		NC_012967: 1011923..1011132 <gbrowseImage> name=NC_012967:1011132..1011923 source=REL606 preset=GeneLocation </gbrowseImage>	GBrowse (REL606)	FASTA Dump
BW2952		NC_012759: 896232..897023 <gbrowseImage> name=NC_012759:896232..897023 source=BW2952 preset=GeneLocation </gbrowseImage>	GBrowse (BW2952)	FASTA Dump
W3110		W3110: 995254..994463 <gbrowseImage> name=NC_007779:994463..995254 source=W3110 preset=GeneLocation </gbrowseImage>	GBrowse(W3110)	FASTA Dump
DH10B		DH10B: 1047983..1047192 <gbrowseImage> name=NC_010473:1047192..1047983 source=DH10B preset=GeneLocation </gbrowseImage>	GBrowse(DH10B)	FASTA Dump
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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type	Strain	Genomic Location	Evidence	Reference	Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele	Nt change(s)	AA change(s)	Reference	Availability
ΔssuC (Keio:JW5121)	deletion	deletion	PMID:16738554	Shigen CGSC11189^[5]
ΔssuC750::kan			PMID:16738554	CGSC:103038
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Notes

Genetic Interactions

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Interactor	Interaction	Allele	Score(s)	Reference(s)	Accessions	Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource	Resource Type	Source	Notes/Reference
JW5121	Plasmid clone	Shigen	PMID:16769691 Status:Clone OK Primer 1:GCCGCAACGCCAGTGAAGAAGTG Primer 2:CCTACCGTGGCCTCCTTCAAATG
7F5	Kohara Phage	Genobase	PMID:3038334
9E9	Kohara Phage	Genobase	PMID:3038334
zca-1230::Tn10	Linked marker	CAG18478 = CGSC7356^[5]	est. P1 cotransduction: 12% ^[6] Synonyms:zbj-1230::Tn10
zcb-3059::Tn10	Linked marker	CAG12094 = CGSC7358^[5]	est. P1 cotransduction: 74% ^[6]
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:G6476	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG13705	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120003076	Escherichia coli str. K-12 substr. MG1655
NCBI (EcoliWiki Page)	GeneID:947216	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB3469	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0003175	Escherichia coli str. K-12 substr. MG1655
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Links

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Name	URL	Comments
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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name	SsuC
Synonyms	alkanesulfonate transporter subunit^[1], membrane component of ABC superfamily^[1], YcbM^[2]^[1], SsuC^[2]^[1], B0934^[2]^[1] , ECK0925, JW5121, ycbM, b0934
Product description	SsuC^[2]^[3]; Component of YcbE/YcbM ABC transporter^[2]; aliphatic sulfonate ABC transporter^[3] Putative aliphatic sulphonate transport membrane component; sulfur starvation inducible; Cbl regulon^[4]
EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0005886	plasma membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0997	C	Seeded from EcoCyc (v14.0)	complete
	GO:0005886	plasma membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-1003	C	Seeded from EcoCyc (v14.0)	complete
	GO:0006790	sulfur metabolic process	PMID:10506196^[7]	IGI: Inferred from Genetic Interaction		P	Seeded from EcoCyc (v14.0)	Missing: with/from
	GO:0006790	sulfur metabolic process	PMID:10506196^[7]	IGI: Inferred from Genetic Interaction	EcoliWiki:ssuE EcoliWiki:ssuD EcoliWiki:ssuA EcoliWiki:ssuB	P	Seeded from EcoCyc (v14.0)	complete
	GO:0016020	membrane	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000515	C	Seeded from EcoCyc (v14.0)	complete
	GO:0006790	sulfur metabolic process	PMID:10506196^[7]	IGI: Inferred from Genetic Interaction	EcoliWiki:ssuE\|EcoliWiki:ssuD\|EcoliWiki:ssuA\|EcoliWiki: ssuB	P		complete
	GO:0016020	membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0472	C	Seeded from EcoCyc (v14.0)	complete
	GO:0016021	integral to membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0812	C	Seeded from EcoCyc (v14.0)	complete
	GO:0016021	integral to membrane	GO_REF:0000023	IEA: Inferred from Electronic Annotation	SP_SL:SL-9909	C	Seeded from EcoCyc (v14.0)	complete
	GO:0016021	integral to membrane	PMID:10506196^[7]	ISS: Inferred from Sequence or Structural Similarity		C	Seeded from EcoCyc (v14.0)	Missing: with/from
	GO:0042918	alkanesulfonate transport	PMID:10506196^[7]	IMP: Inferred from Mutant Phenotype		P	Seeded from EcoCyc (v14.0)	complete
	GO:0042959	alkanesulfonate transporter activity	PMID:10506196^[7]	IMP: Inferred from Mutant Phenotype		F	Seeded from EcoCyc (v14.0)	complete
	GO:0043190	ATP-binding cassette (ABC) transporter complex	PMID:10506196^[7]	ISS: Inferred from Sequence or Structural Similarity		C	Seeded from EcoCyc (v14.0)	Missing: with/from
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
Protein	Subunits of YcbE/YcbM ABC transporter	could be indirect
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
plasma membrane			From EcoCyc^[3]
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MILSPVKSRK AKEEIMATPV KKWLLRVAPW FLPVGIVAVW QLASSVGWLS TRILPSPEGV VTAFWTLSAS GELWQHLAIS SWRALIGFSI GGSLGLILGL ISGLSRWGER LLDTSIQMLR NVPHLALIPL VILWFGIDES AKIFLVALGT LFPIYINTWH GIRNIDRGLV EMARSYGLSG IPLFIHVILP GALPSIMVGV RFALGLMWLT LIVAETISAN SGIGYLAMNA REFLQTDVVV VAIILYALLG KLADVSAQLL ERLWLRWNPA YHLKEATV
Length	278
Mol. Wt	30.637 kDa
pI	10.2 (calculated)
Extinction coefficient	78,950 (calc based on 5 Y, 13 W, and 0 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
Domain	76..251	PF00528 Binding-protein-dependent transport system inner membrane component		PMID:19920124^[8]
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ssuC taxon=562,83333 </beststructure>

Models

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Structure figures

Notes

Gene Product Resources

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Resource type	Source	Notes/Reference
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Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:90111188	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:947216	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0003175	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P75851	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:G6476	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG13705	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:947216	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120003076	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB3469	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Cellular Levels

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See Help:Cellular levels

Molecule	Organism or Strain	Value	Units	Experimental Conditions	Assay used	Notes	Reference(s)
Protein	E. coli K-12 MG1655	3^a	molecules/cell/generation	Medium: MOPS Complete Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling	Low confidence in the sequencing data set.	PMID: 24766808
Protein	E. coli K-12 MG1655	2^a	molecules/cell/generation	Medium: MOPS Minimal Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling	Low confidence in the sequencing data set.	PMID: 24766808
Protein	E. coli K-12 MG1655	0^a	molecules/cell/generation	Medium: MOPS Complete without Methionine Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling	Low confidence in the sequencing data set.	PMID: 24766808
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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
ssuEADCB
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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<gbrowseImage> name=NC_000913:994035..994075 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name	Mutation	Phenotype	Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type	Reference	Notes
microarray	GEO Profiles:b0934 (EcoliWiki Page)	NCBI GEO profiles for ssuC
microarray	GenExpDB:b0934 (EcoliWiki Page)	Summary of data for ssuC from multiple microarray studies
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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name	Resource Type	Description	Source	Notes
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Notes

Accessions Related to ssuC Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:G6476	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB3469	Escherichia coli str. K-12 substr. MG1655
EcoliGenExpDB (EcoliWiki Page)	EcoliGenExpDB:b0934
EcoGene	EcoGene:EG13705	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120003076	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0003175	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Evolution

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Homologs in Other Organisms

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Organism	Homologs (Statistics)	Comments
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Do-It-Yourself Web Tools

Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
Pfam (EcoliWiki Page)	PF00528 Binding-protein-dependent transport system inner membrane component
EcoCyc	EcoCyc:G6476	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG13705	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120003076	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB3469	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0003175	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.00 ^1.01 ^1.02 ^1.03 ^1.04 ^1.05 ^1.06 ^1.07 ^1.08 ^1.09 ^1.10 ^1.11 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.00 ^2.01 ^2.02 ^2.03 ^2.04 ^2.05 ^2.06 ^2.07 ^2.08 ^2.09 ^2.10 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 ^3.2 ^3.3 ^3.4 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 ^4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ ^5.0 ^5.1 ^5.2 CGSC: The Coli Genetics Stock Center
↑ ^6.0 ^6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
↑ ^7.0 ^7.1 ^7.2 ^7.3 ^7.4 ^7.5 ^7.6 van Der Ploeg, JR et al. (1999) The Escherichia coli ssuEADCB gene cluster is required for the utilization of sulfur from aliphatic sulfonates and is regulated by the transcriptional activator Cbl. J. Biol. Chem. 274 29358-65 PubMed
↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

ssuC:On One Page

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Notes

Gene

Nomenclature

Notes

Location(s) and DNA Sequence

Notes

Sequence Features

Notes

Alleles and Phenotypes

Notes

Genetic Interactions

Notes

Genetic Resources

Notes

Accessions in Other Databases

Notes

Links

Product(s)

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

Expression

Overview

Cellular Levels

Notes

Transcription and Transcriptional Regulation

Notes

Translation and Regulation of Translation

Notes

Turnover and Regulation of Turnover

Notes

Experimental

Notes

Accessions Related to ssuC Expression

Notes

Links

Evolution

Homologs in Other Organisms

Do-It-Yourself Web Tools

Notes

Families

Notes

Links

References

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