ssuC:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

SsuC

Synonyms

alkanesulfonate transporter subunit[1], membrane component of ABC superfamily[1], YcbM[2][1], SsuC[2][1], B0934[2][1] , ECK0925, JW5121, ycbM, b0934

Product description

SsuC[2][3];

Component of YcbE/YcbM ABC transporter[2]; aliphatic sulfonate ABC transporter[3]

Putative aliphatic sulphonate transport membrane component; sulfur starvation inducible; Cbl regulon[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0997

C

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003

C

Seeded from EcoCyc (v14.0)

complete

GO:0006790

sulfur metabolic process

PMID:10506196[5]

IGI: Inferred from Genetic Interaction

P

Seeded from EcoCyc (v14.0)

Missing: with/from

GO:0006790

sulfur metabolic process

PMID:10506196[5]

IGI: Inferred from Genetic Interaction

EcoliWiki:ssuE
EcoliWiki:ssuD
EcoliWiki:ssuA
EcoliWiki:ssuB

P

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000515

C

Seeded from EcoCyc (v14.0)

complete

GO:0006790

sulfur metabolic process

PMID:10506196[5]

IGI: Inferred from Genetic Interaction

EcoliWiki:ssuE|EcoliWiki:ssuD|EcoliWiki:ssuA|EcoliWiki: ssuB

P

complete

GO:0016020

membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0472

C

Seeded from EcoCyc (v14.0)

complete

GO:0016021

integral to membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0812

C

Seeded from EcoCyc (v14.0)

complete

GO:0016021

integral to membrane

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-9909

C

Seeded from EcoCyc (v14.0)

complete

GO:0016021

integral to membrane

PMID:10506196[5]

ISS: Inferred from Sequence or Structural Similarity

C

Seeded from EcoCyc (v14.0)

Missing: with/from

GO:0042918

alkanesulfonate transport

PMID:10506196[5]

IMP: Inferred from Mutant Phenotype

P

Seeded from EcoCyc (v14.0)

complete

GO:0042959

alkanesulfonate transporter activity

PMID:10506196[5]

IMP: Inferred from Mutant Phenotype

F

Seeded from EcoCyc (v14.0)

complete

GO:0043190

ATP-binding cassette (ABC) transporter complex

PMID:10506196[5]

ISS: Inferred from Sequence or Structural Similarity

C

Seeded from EcoCyc (v14.0)

Missing: with/from

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of YcbE/YcbM ABC transporter

could be indirect


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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

plasma membrane

From EcoCyc[3]


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MILSPVKSRK AKEEIMATPV KKWLLRVAPW FLPVGIVAVW QLASSVGWLS TRILPSPEGV
VTAFWTLSAS GELWQHLAIS SWRALIGFSI GGSLGLILGL ISGLSRWGER LLDTSIQMLR
NVPHLALIPL VILWFGIDES AKIFLVALGT LFPIYINTWH GIRNIDRGLV EMARSYGLSG
IPLFIHVILP GALPSIMVGV RFALGLMWLT LIVAETISAN SGIGYLAMNA REFLQTDVVV
VAIILYALLG KLADVSAQLL ERLWLRWNPA YHLKEATV
Length

278

Mol. Wt

30.637 kDa

pI

10.2 (calculated)

Extinction coefficient

78,950 (calc based on 5 Y, 13 W, and 0 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

76..251

PF00528 Binding-protein-dependent transport system inner membrane component

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ssuC taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111188

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947216

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003175

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P75851

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6476

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13705

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947216

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003076

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3469

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 5.6 van Der Ploeg, JR et al. (1999) The Escherichia coli ssuEADCB gene cluster is required for the utilization of sulfur from aliphatic sulfonates and is regulated by the transcriptional activator Cbl. J. Biol. Chem. 274 29358-65 PubMed
  6. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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