spoT:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

Quickview

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Standard Name

spoT

Gene Synonym(s)

ECK3640, b3650, JW3625[1], JW3625

Product Desc.

SPOT[2][3]

Guanosine 5'-diphosphate, 3'-diphosphate pyrophosphatase; ppGpp synthase II activity[4]

Product Synonyms(s)

bifunctional (p)ppGpp synthetase II and guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase[1], B3650[2][1], SpoT[2][1] , ECK3640, JW3625, b3650

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): rpoZ-spoT-trmH-recG[2], rpoZ-spoTU-recG

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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cgtA mutants have elevated basal ppGpp and CgtA is proposed to be a regulator of SpoT activity (Jiang, 2007).[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

spoT

Mnemonic

Spot (magic spot)

Synonyms

ECK3640, b3650, JW3625[1], JW3625

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

82.34 minutes 

MG1655: 3820423..3822531
<gbrowseImage> name=NC_000913:3820423..3822531 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 3760757..3762865
<gbrowseImage> name=NC_012967:3760757..3762865 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 3708750..3710864
<gbrowseImage> name=NC_012759:3708750..3710864 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 3818015..3815907
<gbrowseImage> name=NC_007779:3815907..3818015 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 3918001..3920115
<gbrowseImage> name=NC_010473:3918001..3920115 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

spoT11

CGSC:5425

spoT1

CGSC:4550

spoT802

CGSC:12139

spoT0

CGSC:18761


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Notes

Genetic Interactions

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<protect>

Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW3625

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCTATCTGTTTGAAAGCCTGAA

Primer 2:CCATTTCGGTTTCGGGTGACTTT

7F3

Kohara Phage

Genobase

PMID:3038334

2A6

Kohara Phage

Genobase

PMID:3038334

zhg-50::Tn10

Linked marker

CAG18450 = CGSC7450[5]

est. P1 cotransduction: % [6]
Synonyms:zhf-50::Tn10, zhf-5::Tn10

zic-4901::Tn10

Linked marker

CAG18492 = CGSC7457[5]

est. P1 cotransduction: 78% [6]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10966

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10966

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000955

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:948159

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0959

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011935

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

SpoT

Synonyms

bifunctional (p)ppGpp synthetase II and guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase[1], B3650[2][1], SpoT[2][1] , ECK3640, JW3625, b3650

Product description

SPOT[2][3]

Guanosine 5'-diphosphate, 3'-diphosphate pyrophosphatase; ppGpp synthase II activity[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003607

F

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0086

C

Seeded from EcoCyc (v14.0)

complete

GO:0008893

guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:3.1.7.2

F

Seeded from EcoCyc (v14.0)

complete

GO:0015969

guanosine tetraphosphate metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004811

P

Seeded from EcoCyc (v14.0)

complete

GO:0015969

guanosine tetraphosphate metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR007685

P

Seeded from EcoCyc (v14.0)

complete

GO:0016787

hydrolase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0378

F

Seeded from EcoCyc (v14.0)

complete

GO:0030145

manganese ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0464

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

rplV

PMID:15690043

Experiment(s):EBI-880676, EBI-886668

Protein

rpoC

PMID:15690043

Experiment(s):EBI-880676

Protein

rpsA

PMID:15690043

Experiment(s):EBI-880676

Protein

rpsC

PMID:15690043

Experiment(s):EBI-880676

Protein

rpsD

PMID:15690043

Experiment(s):EBI-880676

Protein

rpsG

PMID:15690043

Experiment(s):EBI-880676, EBI-886668

Protein

rpsK

PMID:15690043

Experiment(s):EBI-880676

Protein

trmH

PMID:15690043

Experiment(s):EBI-880676

Protein

srmB

PMID:15690043

Experiment(s):EBI-880676

Protein

tolR

PMID:15690043

Experiment(s):EBI-880676

Protein

tufA

PMID:15690043

Experiment(s):EBI-880676

Protein

rluB

PMID:15690043

Experiment(s):EBI-880676

Protein

deaD

PMID:15690043

Experiment(s):EBI-880676

Protein

hrpA

PMID:15690043

Experiment(s):EBI-880676

Protein

mukB

PMID:15690043

Experiment(s):EBI-880676

Protein

rplB

PMID:15690043

Experiment(s):EBI-880676, EBI-886668

Protein

rplC

PMID:15690043

Experiment(s):EBI-880676, EBI-886668

Protein

rplD

PMID:15690043

Experiment(s):EBI-880676, EBI-886668

Protein

hupA

PMID:15690043

Experiment(s):EBI-886668

Protein

rplI

PMID:15690043

Experiment(s):EBI-886668

Protein

rplL

PMID:15690043

Experiment(s):EBI-886668

Protein

rplM

PMID:15690043

Experiment(s):EBI-886668

Protein

rplO

PMID:15690043

Experiment(s):EBI-886668

Protein

rplQ

PMID:15690043

Experiment(s):EBI-886668

Protein

rplR

PMID:15690043

Experiment(s):EBI-886668

Protein

rplS

PMID:15690043

Experiment(s):EBI-886668

Protein

rplU

PMID:15690043

Experiment(s):EBI-886668

Protein

rplX

PMID:15690043

Experiment(s):EBI-886668

Protein

rpmB

PMID:15690043

Experiment(s):EBI-886668

Protein

rpsB

PMID:15690043

Experiment(s):EBI-886668

Protein

rpsE

PMID:15690043

Experiment(s):EBI-886668

Protein

rpsF

PMID:15690043

Experiment(s):EBI-886668

Protein

rpsH

PMID:15690043

Experiment(s):EBI-886668

Protein

rpsI

PMID:15690043

Experiment(s):EBI-886668

Protein

rpsJ

PMID:15690043

Experiment(s):EBI-886668

Protein

rpsL

PMID:15690043

Experiment(s):EBI-886668

Protein

rpsN

PMID:15690043

Experiment(s):EBI-886668

Protein

rpsP

PMID:15690043

Experiment(s):EBI-886668

Protein

rpsR

PMID:15690043

Experiment(s):EBI-886668

Protein

rpsT

PMID:15690043

Experiment(s):EBI-886668

Protein

yubM

PMID:15690043

Experiment(s):EBI-886668

Protein

rpsI

PMID:19402753

LCMS(ID Probability):99.6

Protein

rho

PMID:19402753

MALDI(Z-score):37.631749

Protein

rpsH

PMID:19402753

LCMS(ID Probability):99.6

Protein

acpP

PMID:19402753

LCMS(ID Probability):99.4 MALDI(Z-score):28.517444

Protein

hupA

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsT

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsJ

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsN

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpmB

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsP

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplR

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplS

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):3.518360

Protein

rplO

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsA

PMID:19402753

MALDI(Z-score):18.633215

Protein

rplU

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplX

PMID:19402753

LCMS(ID Probability):99.5

Protein

rplQ

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplI

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):5.990057

Protein

rplM

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplB

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):33.813246

Protein

rpsC

PMID:19402753

MALDI(Z-score):35.014889

Protein

rplA

PMID:19402753

MALDI(Z-score):27.617083

Protein

rpsD

PMID:19402753

MALDI(Z-score):36.055397

Protein

cobB

PMID:19402753

MALDI(Z-score):22.005263

Protein

srmB

PMID:19402753

MALDI(Z-score):28.181346

Protein

rlmL

PMID:19402753

MALDI(Z-score):18.735939

Protein

trmH

PMID:19402753

MALDI(Z-score):20.760958

Protein

rplD

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):7.596467

Protein

pssA

PMID:19402753

MALDI(Z-score):31.812602

Protein

rhlB

PMID:19402753

MALDI(Z-score):18.111170

Protein

hfq

PMID:19402753

LCMS(ID Probability):95.5 MALDI(Z-score):24.477043

Protein

deaD

PMID:19402753

MALDI(Z-score):25.785939

Protein

rluB

PMID:19402753

MALDI(Z-score):35.989620

Protein

nadK

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplL

PMID:19402753

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MYLFESLNQL IQTYLPEDQI KRLRQAYLVA RDAHEGQTRS SGEPYITHPV AVACILAEMK
LDYETLMAAL LHDVIEDTPA TYQDMEQLFG KSVAELVEGV SKLDKLKFRD KKEAQAENFR
KMIMAMVQDI RVILIKLADR THNMRTLGSL RPDKRRRIAR ETLEIYSPLA HRLGIHHIKT
ELEELGFEAL YPNRYRVIKE VVKAARGNRK EMIQKILSEI EGRLQEAGIP CRVSGREKHL
YSIYCKMVLK EQRFHSIMDI YAFRVIVNDS DTCYRVLGQM HSLYKPRPGR VKDYIAIPKA
NGYQSLHTSM IGPHGVPVEV QIRTEDMDQM AEMGVAAHWA YKEHGETSTT AQIRAQRWMQ
SLLELQQSAG SSFEFIESVK SDLFPDEIYV FTPEGRIVEL PAGATPVDFA YAVHTDIGHA
CVGARVDRQP YPLSQPLTSG QTVEIITAPG ARPNAAWLNF VVSSKARAKI RQLLKNLKRD
DSVSLGRRLL NHALGGSRKL NEIPQENIQR ELDRMKLATL DDLLAEIGLG NAMSVVVAKN
LQHGDASIPP ATQSHGHLPI KGADGVLITF AKCCRPIPGD PIIAHVSPGK GLVIHHESCR
NIRGYQKEPE KFMAVEWDKE TAQEFITEIK VEMFNHQGAL ANLTAAINTT TSNIQSLNTE
EKDGRVYSAF IRLTARDRVH LANIMRKIRV MPDVIKVTRN RN
Length

702

Mol. Wt

79.343 kDa

pI

9.0 (calculated)

Extinction coefficient

54,780 - 55,780 (calc based on 22 Y, 4 W, and 8 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

45..144

PF01966 HD domain

PMID:19920124

Domain

388..447

PF02824 TGS domain

PMID:19920124

Domain

235..345

PF04607 Region found in RelA / SpoT proteins

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=spoT taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131521

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948159

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011935

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0AG24

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10966

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10966

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948159

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000955

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0959

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

9.43E+01

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

Ecoli K-12

29.004+/-0.204

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.098908918

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 MG1655

472

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

158

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

326

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

rpoZ-spoT-trmH-recG

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:3820403..3820443 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b3650 (EcoliWiki Page)

NCBI GEO profiles for spoT

microarray

GenExpDB:b3650 (EcoliWiki Page)

Summary of data for spoT from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to spoT Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10966

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0959

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3650

EcoGene

EcoGene:EG10966

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000955

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011935

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000014602 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT4G02260 (score: 1.000; bootstrap: 73%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000024795 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00038968 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00014148 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000018036 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-050417-377 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-050417-378 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0230182 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0039650 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA11268-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000330721 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000006766 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000024331 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:1915945 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q6ATB4 (score: 1.000; bootstrap: 97%)
  • Q9AYT4 (score: 0.998)
  • Q75IS2 (score: 0.549)
  • Q6ATB2 (score: 0.496)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000012759 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000016445 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000171044 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00034759001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000038181 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

SPOT

From SHIGELLACYC

E. coli O157

SPOT

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF02824 TGS domain

Pfam (EcoliWiki Page)

PF01966 HD domain

Panther (EcoliWiki Page)

PTHR21262:SF0

Superfamily (EcoliWiki Page)

SUPERFAMILY:81271

Superfamily (EcoliWiki Page)

SUPERFAMILY:81301

Superfamily (EcoliWiki Page)

SUPERFAMILY:109604

Pfam (EcoliWiki Page)

PF04607 Region found in RelA / SpoT proteins

EcoCyc

EcoCyc:EG10966

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10966

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000955

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0959

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011935

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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