sgrS:On One Page

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Gene Product(s)

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Evolution

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Standard Name	sgrS
Gene Synonym(s)	ECK0071, b4577, JWR0259, ryaA, ryaA
Product Desc.	SgrS
Product Synonyms(s)	small antisense RNA, RyaA, B4577
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): sgrS
Regulation/Activity
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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name	sgrS
Mnemonic	SuGar transport-Related sRNA
Synonyms	ECK0071, b4577, JWR0259, ryaA, ryaA
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Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain	Map location	Genome coordinates	Genome browsers	Sequence links
MG1655	1.67 minutes	MG1655: 77367..77593 <gbrowseImage> name=NC_000913:77367..77593 source=MG1655 preset=GeneLocation </gbrowseImage>	EcoCyc GBrowse(MG1655)	FASTA Dump EcoCyc Sequence Dump
BW2952		NC_012759: 77366..77592 <gbrowseImage> name=NC_012759:77366..77592 source=BW2952 preset=GeneLocation </gbrowseImage>	GBrowse (BW2952)	FASTA Dump
W3110		W3110: 77367..77593 <gbrowseImage> name=NC_007779:77367..77593 source=W3110 preset=GeneLocation </gbrowseImage>	GBrowse(W3110)	FASTA Dump
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Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type	Strain	Genomic Location	Evidence	Reference	Notes
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Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele	Nt change(s)	AA change(s)	Phenotype: Type	Phenotype: Description	Reference	Availability	Comments
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Genetic Interactions

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Interactor	Interaction	Allele	Score(s)	Reference(s)	Accessions	Notes
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Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource	Resource Type	Source	Notes/Reference
	Plasmid clone	Shigen	PMID:16769691 Status: Primer 1: Primer 2:
8H11	Kohara Phage	Genobase	PMID:3038334
carB96::Tn10	Linked marker	CAG12093 = CGSC7322	est. P1 cotransduction: 14% Synonyms:car-96::Tn10
leuO3051::Tn10	Linked marker	CAG12095 = CGSC7324	est. P1 cotransduction: 81% Synonyms:zab-3051::Tn10 nnnThe start of leuO was reannotated by Riley et al. (2006).
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Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:G0-9941	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG31149	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120002667	Escherichia coli str. K-12 substr. MG1655
NCBI (EcoliWiki Page)	GeneID:4056038	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB4546	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0285090	Escherichia coli str. K-12 substr. MG1655
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Links

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Name	URL	Comments
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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name	SgrS RNA
Synonyms	small antisense RNA, RyaA, B4577
Product description	SgrS
EC number (for enzymes)
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Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0070928	regulation of mRNA stability, ncRNA-mediated	PMID:15522088	IMP: Inferred from Mutant Phenotype		P	Seeded from EcoCyc (v14.0)	complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
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Localization

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Compartment	Description	Evidence	Reference/Source	Notes
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Structure and Physical Properties

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Physical Properties

<protect> Type sRNA Sequence GGGGCUGAUU CUGGAUUCGA CGGGAUUUGC GAAACCCAAG GUGCAUGCCG AGGGGCGGUU GGCCUCGUAA AAAGCCGCAA AAAAUAGUCG CAAACGACGA AAACUACGCU UUAGCAGCUU AAUAACCUGC UUAGAGCCCU CUCUCCCUAG CCUCCGCUCU UAGGACGGGG AUCAAGAGAG GUCAAACCCA AAAGAGAUCG CGUGGAAGCC CUGCCUGGGG UUGAAGCGUU AAAACUUAAU CAGGCUAGUU UGUUAGUGGC GUGUCCGUCC GCAGCUGGCA AGCGAAUGUA AAGACUGACU AAGCAUGUAG UACCGAGGAU GUAGGAAUUU CGGACGCGGG UUCAACUCCC GCCAGCUCCA CCA Mol. Wt edit table

SgrS RNA - Image courtesy of RFam

Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki. Type Residues Description Notes References edit table

<motif_map/>

Structure See Help:Product_structure for help entering or editing information in this section of EcoliWiki. Structures <beststructure> gene=sgrS taxon=562,83333 </beststructure> Models View models at: PSI-PRED Genomes TO Protein (GTOP) edit table

</protect> Structure figures Notes Gene Product Resources [back to top] See Help:Product_resources for help with entering or editing information in this section of EcoliWiki. Resource type Source Notes/Reference edit table Notes Accessions in Other Databases [back to top] See Help:Gene_accessions for help with entering information into the Gene Accessions table. Database Accession Notes EcoCyc EcoCyc:G0-9941 Escherichia coli str. K-12 substr. MG1655 EcoGene EcoGene:EG31149 Escherichia coli str. K-12 substr. MG1655 RegulonDB RegulonDB:ECK120002667 Escherichia coli str. K-12 substr. MG1655 EchoBASE EchoBASE:EB4546 Escherichia coli str. K-12 substr. MG1655 ASAP ASAP:ABE-0285090 Escherichia coli str. K-12 substr. MG1655 edit table Notes Links [back to top] Name URL Comments edit table Expression [back to top] {{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css> Overview This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement. Cellular Levels [back to top] See Help:Cellular levels Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s) edit table Notes Transcription and Transcriptional Regulation [back to top] See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki. Transcription unit(s) sgrS edit table Figure courtesy of RegulonDB Notes This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement. Translation and Regulation of Translation [back to top] <gbrowseImage> name=NC_000913:77347..77387 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus. Notes This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement. Turnover and Regulation of Turnover </protect> Notes This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement. Experimental [back to top] Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki. Allele Name Mutation Phenotype Reference edit table Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki. Type Reference Notes edit table Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki. Resource Name Resource Type Description Source Notes edit table <protect> Notes Accessions Related to sgrS Expression [back to top] See Help:Gene_accessions for help with entering information into the Gene Accessions table. Database Accession Notes EcoCyc EcoCyc:G0-9941 Escherichia coli str. K-12 substr. MG1655 EchoBASE EchoBASE:EB4546 Escherichia coli str. K-12 substr. MG1655 EcoGene EcoGene:EG31149 Escherichia coli str. K-12 substr. MG1655 RegulonDB RegulonDB:ECK120002667 Escherichia coli str. K-12 substr. MG1655 ASAP ASAP:ABE-0285090 Escherichia coli str. K-12 substr. MG1655 edit table Notes Links [back to top] Name URL Comments edit table Evolution [back to top] {{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css> Homologs in Other Organisms [back to top] See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki. Organism Homologs (Statistics) Comments edit table Do-It-Yourself Web Tools BLAST CDD InParanoid YOGY Notes Families [back to top] Database Accession Notes PFAM (EcoliWiki Page) PFAM:PF00496 edit table Notes Families [back to top] See Help:Evolution_families for help entering or editing information in this section of EcoliWiki. Database Accession Notes edit table Notes Links [back to top] Name URL Comments edit table References [back to top] See Help:References for how to manage references in EcoliWiki. Categories [back to top]