sgrS:Gene Product(s)

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

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Standard name

SgrS RNA

Synonyms

small antisense RNA[1], RyaA[2][1], B4577[2][1]

Product description

SgrS[2][3]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0070928

regulation of mRNA stability, ncRNA-mediated

PMID:15522088[4]

IMP: Inferred from Mutant Phenotype

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties

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Type

sRNA

Sequence 
GGGGCUGAUU CUGGAUUCGA CGGGAUUUGC GAAACCCAAG GUGCAUGCCG AGGGGCGGUU
GGCCUCGUAA AAAGCCGCAA AAAAUAGUCG CAAACGACGA AAACUACGCU UUAGCAGCUU
AAUAACCUGC UUAGAGCCCU CUCUCCCUAG CCUCCGCUCU UAGGACGGGG AUCAAGAGAG
GUCAAACCCA AAAGAGAUCG CGUGGAAGCC CUGCCUGGGG UUGAAGCGUU AAAACUUAAU
CAGGCUAGUU UGUUAGUGGC GUGUCCGUCC GCAGCUGGCA AGCGAAUGUA AAGACUGACU
AAGCAUGUAG UACCGAGGAU GUAGGAAUUU CGGACGCGGG UUCAACUCCC GCCAGCUCCA CCA
Mol. Wt


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SgrS RNA - Image courtesy of RFam

Domains/Motifs/Modification Sites

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Type Residues Description Notes References
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Structure
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Structures

<beststructure> gene=sgrS taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:G0-9941

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG31149

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002667

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB4546

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0285090

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ Vanderpool, CK & Gottesman, S (2004) Involvement of a novel transcriptional activator and small RNA in post-transcriptional regulation of the glucose phosphoenolpyruvate phosphotransferase system. Mol. Microbiol. 54 1076-89 PubMed

Categories

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