rrsH:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

rrsH

Gene Synonym(s)

ECK0201, b0201, JWR0001[1], JWR0001

Product Desc.

rrsH 16S ribosomal RNA[2][3];

Component of 30S ribosomal subunit[2][3]

Product Synonyms(s)

16S rRNA (rrsH)[1], 16S rRNA (rrnG)[1], 16S rRNA (rrnD)[1], 16S rRNA (rrnC)[1], 16S rRNA (rrnA)[1], 16S rRNA (rrnB)[1], 16S rRNA (rrnE)[1], rrsH[2][1]

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): rrsH-ileV-alaV-rrlH-rrfH[2], rrsH, rrnH

Regulation/Activity
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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

rrsH

Mnemonic

Ribosomal RNA, 16S

Synonyms

ECK0201, b0201, JWR0001[1], JWR0001

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

4.82 minutes 

MG1655: 223771..225312
<gbrowseImage> name=NC_000913:223771..225312 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 226609..228150
<gbrowseImage> name=NC_012967:226609..228150 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 223770..225311
<gbrowseImage> name=NC_012759:223770..225311 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 223771..225312
<gbrowseImage> name=NC_007779:223771..225312 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 197875..199416
<gbrowseImage> name=NC_010473:197875..199416 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

rrsH spcr

C/G to T/A transition at position 1192

Resistant to

Resistance to Spectinomycin

PMID:3071688

Figures 1 through 3 and Table 1 show the results of various mapping techniques to show the changes which cause Spectinomycin resistance.

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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691

Status:

Primer 1:

Primer 2:

8G3

Kohara Phage

Genobase

PMID:3038334

7D5

Kohara Phage

Genobase

PMID:3038334

zad-220::Tn10

Linked marker

CAG12025 = CGSC7326[4]

est. P1 cotransduction: 1% [5]

yafC502::Tn10

Linked marker

CAG18436 = CGSC7328[4]

est. P1 cotransduction: 76% [5]
Synonyms:zae-502::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG30090

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG30090

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:944897

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002532

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB4253

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000677

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

16S rRNA

Synonyms

16S rRNA (rrsH)[1], 16S rRNA (rrnG)[1], 16S rRNA (rrnD)[1], 16S rRNA (rrnC)[1], 16S rRNA (rrnA)[1], 16S rRNA (rrnB)[1], 16S rRNA (rrnE)[1], rrsH[2][1]

Product description

rrsH 16S ribosomal RNA[2][3];

Component of 30S ribosomal subunit[2][3]

EC number (for enzymes)


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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of 30S ribosomal subunit

could be indirect


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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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Physical Properties

<protect>

Type

rRNA

Sequence 
AAAUUGAAGA GUUUGAUCAU GGCUCAGAUU GAACGCUGGC GGCAGGCCUA ACACAUGCAA
GUCGAACGGU AACAGGAAGC AGCUUGCUGC UUCGCUGACG AGUGGCGGAC GGGUGAGUAA
UGUCUGGGAA GCUGCCUGAU GGAGGGGGAU AACUACUGGA AACGGUAGCU AAUACCGCAU
AAUGUCGCAA GACCAAAGAG GGGGACCUUC GGGCCUCUUG CCAUCGGAUG UGCCCAGAUG
GGAUUAGCUU GUUGGUGGGG UAACGGCUCA CCAAGGCGAC GAUCCCUAGC UGGUCUGAGA
GGAUGACCAG CCACACUGGA ACUGAGACAC GGUCCAGACU CCUACGGGAG GCAGCAGUGG
GGAAUAUUGC ACAAUGGGCG CAAGCCUGAU GCAGCCAUGC CGCGUGUAUG AAGAAGGCCU
UCGGGUUGUA AAGUACUUUC AGCGGGGAGG AAGGGAGUAA AGUUAAUACC UUUGCUCAUU
GACGUUACCC GCAGAAGAAG CACCGGCUAA CUCCGUGCCA GCAGCCGCGG UAAUACGGAG
GGUGCAAGCG UUAAUCGGAA UUACUGGGCG UAAAGCGCAC GCAGGCGGUU UGUUAAGUCA
GAUGUGAAAU CCCCGGGCUC AACCUGGGAA CUGCAUCUGA UACUGGCAAG CUUGAGUCUC
GUAGAGGGGG GUAGAAUUCC AGGUGUAGCG GUGAAAUGCG UAGAGAUCUG GAGGAAUACC
GGUGGCGAAG GCGGCCCCCU GGACGAAGAC UGACGCUCAG GUGCGAAAGC GUGGGGAGCA
AACAGGAUUA GAUACCCUGG UAGUCCACGC CGUAAACGAU GUCGACUUGG AGGUUGUGCC
CUUGAGGCGU GGCUUCCGGA GCUAACGCGU UAAGUCGACC GCCUGGGGAG UACGGCCGCA
AGGUUAAAAC UCAAAUGAAU UGACGGGGGC CCGCACAAGC GGUGGAGCAU GUGGUUUAAU
UCGAUGCAAC GCGAAGAACC UUACCUGGUC UUGACAUCCA CGGAAGUUUU CAGAGAUGAG
AAUGUGCCUU CGGGAACCGU GAGACAGGUG CUGCAUGGCU GUCGUCAGCU CGUGUUGUGA
AAUGUUGGGU UAAGUCCCGC AACGAGCGCA ACCCUUAUCC UUUGUUGCCA GCGGUCCGGC
CGGGAACUCA AAGGAGACUG CCAGUGAUAA ACUGGAGGAA GGUGGGGAUG ACGUCAAGUC
AUCAUGGCCC UUACGACCAG GGCUACACAC GUGCUACAAU GGCGCAUACA AAGAGAAGCG
ACCUCGCGAG AGCAAGCGGA CCUCAUAAAG UGCGUCGUAG UCCGGAUUGG AGUCUGCAAC
UCGACUCCAU GAAGUCGGAA UCGCUAGUAA UCGUGGAUCA GAAUGCCACG GUGAAUACGU
UCCCGGGCCU UGUACACACC GCCCGUCACA CCAUGGGAGU GGGUUGCAAA AGAAGUAGGU
AGCUUAACCU UCGGGAGGGC GCUUACCACU UUGUGAUUCA UGACUGGGGU GAAGUCGUAA
CAAGGUAACC GUAGGGGAAC CUGCGGUUGG AUCACCUCCU UA
Mol. Wt

499837.62

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=rrsH taxon=562,83333 </beststructure>

Models

View models at:

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</protect>

Structure figures

Notes

Gene Product Resources


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG30090

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG30090

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002532

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB4253

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000677

Escherichia coli str. K-12 substr. MG1655

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Notes

Links




Expression


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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels


See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)
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Notes

Transcription and Transcriptional Regulation


See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

rrsH-ileV-alaV-rrlH-rrfH

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Figure courtesy of RegulonDB


Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation


<gbrowseImage> name=NC_000913:223751..223791 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.


Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental


Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b0201 (EcoliWiki Page)

NCBI GEO profiles for rrsH

microarray

GenExpDB:b0201 (EcoliWiki Page)

Summary of data for rrsH from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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<protect>

Notes

Accessions Related to rrsH Expression


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG30090

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB4253

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0201

EcoGene

EcoGene:EG30090

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002532

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000677

Escherichia coli str. K-12 substr. MG1655

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Notes

Links



Evolution


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Homologs in Other Organisms


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments
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Do-It-Yourself Web Tools


Notes

Families


Organism Homologs (Statistics) Comments

Apis mellifera

  • ENSAPMP00000031980 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

YAED

From SHIGELLACYC

E. coli O157

YAED

From ECOO157CYC

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Notes

Families


See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Database Accession Notes
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Notes

Links



References


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 1.14 1.15 1.16 1.17 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 CGSC: The Coli Genetics Stock Center
  5. ↑ 5.0 5.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

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