rppH:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

Quickview

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Standard Name

rppH [1]

Gene Synonym(s)

nudH, ECK2826, b2830, JW2798, ydgP, ygdP[2], ygdP

Product Desc.

RNA pyrophosphohydrolase (removes the 5'-pyrophosphate from mRNAs and initiates degradation by the 5'-end dependent pathway)[1]; putative invasion protein[3][4] RNA pyrophosphohydrolase, destabilizes primary transcripts[5]

Product Synonyms(s)

NudH,nucleotide hydrolase[2], B2830[3][2], NudH[3][2], YgdP[3][2], ECK2826, JW2798, nudH, ygdP, b2830

Function from GO

<GO_nr />

Knock-Out Phenotype

Many mRNAs have an increased half-life. [1]

Regulation/Expression

transcription unit(s): ptsP[3]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Nudix hydrolase. RppH removes 5' triphosphate from primary transcripts, enhancing RNase E activity (Deana, 2008). Required for invasion of cultured mammalian cells by both E. coli K1 and S. typhimurium. NudH also hydrolyzes Ap5A and Ap4A. Ribosome-associated protein (Jiang, 2007).[5]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

rppH [1]

Mnemonic

RNA pyrophosphohydrolase

Synonyms

nudH, ECK2826, b2830, JW2798, ydgP, ygdP[2], ygdP

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

BW2952

NC_012759: 2853617..2854147
<gbrowseImage> name=NC_012759:2853617..2854147 source=BW2952 preset=GeneLocation </gbrowseImage>

MG1655

63.94 minutes 

MG1655: 2966999..2966469
<gbrowseImage> name=NC_000913:2966469..2966999 source=MG1655 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 2967633..2967103
<gbrowseImage> name=NC_007779:2967103..2967633 source=W3110 preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

rppHE53A

E53A

Loss of function

seeded from UniProt:P0A776

nudH(del) (Keio:JW2798)

deletion

deletion

PMID:16738554

Shigen
CGSC10185[6]

rppH5::FLKP2(lacZ,kan)

PMID:12142427

CGSC:87288

rppH6(del)

PMID:12142427

CGSC:87291

rppH754(del)::kan

PMID:16738554

CGSC:102140

rppH754(del)::FRT

Deletion

Mutagenesis rate

Decrease in Stressed Induced Mutagenesis (SIM).

PMID:23224554

Parental Strain: SMR4563 Experimental Strain: SMR12210

The mutation conferred a decrease in SIM with mutant frequency being reduced by over 90 percent. See table S3.

rppH754(del)::FRT

Deletion

Sensitivity to

SDS-EDTA sensitivity.

PMID:23224554

Parental Strain: SMR4563 Experimental Strain: SMR12210

The mutation conferred a increase in SDS-EDTA sensitivity. See table S7 and S1 for full experimental results.

CAG45114 rppH754(del)::FRTKanFRT

Deletion

SigmaE activity

Decrease in SigmaE activity

PMID:23224554

Parental Strain: CAG45115 Experimental Strain: SMR15315

See table S11 for full experimental data.

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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW2798

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCATTGATGACGATGGCTACCG

Primer 2:CCACCTCTTTTACGTCGATAAGC

recD1901::Tn10

Linked marker

CAG12135 = CGSC7429[6]

est. P1 cotransduction: 57% [7]

speA210::Tn10

Linked marker

CAG12168 = CGSC7431[6]

est. P1 cotransduction: % [7]

Synonyms:zgd-210::Tn10, zgf-210::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:G7459

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13091

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004022

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:947300

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2896

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009276

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

RppH [1]

Synonyms

NudH,nucleotide hydrolase[2], B2830[3][2], NudH[3][2], YgdP[3][2], ECK2826, JW2798, nudH, ygdP, b2830

Product description

RNA pyrophosphohydrolase (removes the 5'-pyrophosphate from mRNAs and initiates degradation by the 5'-end dependent pathway)[1]; putative invasion protein[3][4] RNA pyrophosphohydrolase, destabilizes primary transcripts[5]

EC number (for enzymes)

3.6.1.-[2]

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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0000287

magnesium ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0460

F

Seeded from EcoCyc (v14.0)

complete

GO:0008270

zinc ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0862

F

Seeded from EcoCyc (v14.0)

complete

GO:0016818

hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

PMID:18202662

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc (v14.0)

complete

GO:0030145

manganese ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0464

F

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

C

Seeded from Riley et al 2006 [2].

Missing: evidence, reference

GO:0050779

RNA destabilization

PMID:18202662

IMP: Inferred from Mutant Phenotype

P

complete

GO:0034353

RNA pyrophosphohydrolase activity

PMID:18202662

IDA: Inferred from Direct Assay

F

Fig. 2

complete

GO:0016818

hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

PMID:18202662

IDA: Inferred from Direct Assay

F

Fig. 1 and 2.

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

yajQ

PMID:15690043

Experiment(s):EBI-885881

Protein

ycbY

PMID:15690043

Experiment(s):EBI-885881

Protein

rluC

PMID:15690043

Experiment(s):EBI-885881

Protein

dapF

PMID:15690043

Experiment(s):EBI-885881, EBI-892437

Protein

deaD

PMID:15690043

Experiment(s):EBI-885881

Protein

rplA

PMID:15690043

Experiment(s):EBI-885881, EBI-892437

Protein

rplB

PMID:15690043

Experiment(s):EBI-885881, EBI-892437

Protein

rplC

PMID:15690043

Experiment(s):EBI-885881, EBI-892437

Protein

rplD

PMID:15690043

Experiment(s):EBI-885881, EBI-892437

Protein

rplE

PMID:15690043

Experiment(s):EBI-885881

Protein

rplF

PMID:15690043

Experiment(s):EBI-885881, EBI-892437

Protein

rplI

PMID:15690043

Experiment(s):EBI-885881, EBI-892437

Protein

rplJ

PMID:15690043

Experiment(s):EBI-885881

Protein

rplM

PMID:15690043

Experiment(s):EBI-885881, EBI-892437

Protein

rplN

PMID:15690043

Experiment(s):EBI-885881

Protein

rplO

PMID:15690043

Experiment(s):EBI-885881, EBI-892437

Protein

rplR

PMID:15690043

Experiment(s):EBI-885881, EBI-892437

Protein

rplS

PMID:15690043

Experiment(s):EBI-885881, EBI-892437

Protein

rplV

PMID:15690043

Experiment(s):EBI-885881, EBI-892437

Protein

rpsA

PMID:15690043

Experiment(s):EBI-885881, EBI-892437

Protein

rpsB

PMID:15690043

Experiment(s):EBI-885881, EBI-892437

Protein

rpsD

PMID:15690043

Experiment(s):EBI-885881

Protein

rpsE

PMID:15690043

Experiment(s):EBI-885881, EBI-892437

Protein

rpsG

PMID:15690043

Experiment(s):EBI-885881, EBI-892437

Protein

rpsM

PMID:15690043

Experiment(s):EBI-885881, EBI-892437

Protein

spoT

PMID:15690043

Experiment(s):EBI-885881

Protein

srmB

PMID:15690043

Experiment(s):EBI-885881

Protein

rnr

PMID:15690043

Experiment(s):EBI-885881

Protein

yfiF

PMID:15690043

Experiment(s):EBI-885881, EBI-892437

Protein

rpsD

PMID:16606699

Experiment(s):EBI-1144087

Protein

rplC

PMID:16606699

Experiment(s):EBI-1144087

Protein

rtcB

PMID:16606699

Experiment(s):EBI-1144087

Protein

ynaE

PMID:16606699

Experiment(s):EBI-1144087

Protein

slyD

PMID:16606699

Experiment(s):EBI-1144087

Protein

ydfH

PMID:16606699

Experiment(s):EBI-1144087

Protein

ydfK

PMID:16606699

Experiment(s):EBI-1144087

Protein

xapR

PMID:16606699

Experiment(s):EBI-1144087

Protein

rplQ

PMID:16606699

Experiment(s):EBI-1144087

Protein

rplB

PMID:16606699

Experiment(s):EBI-1144087

Protein

groL

PMID:16606699

Experiment(s):EBI-1144087

Protein

rpsI

PMID:16606699

Experiment(s):EBI-1144087

Protein

hupA

PMID:15690043

Experiment(s):EBI-892437

Protein

rplP

PMID:15690043

Experiment(s):EBI-892437

Protein

rplQ

PMID:15690043

Experiment(s):EBI-892437

Protein

rplT

PMID:15690043

Experiment(s):EBI-892437

Protein

rplU

PMID:15690043

Experiment(s):EBI-892437

Protein

rplX

PMID:15690043

Experiment(s):EBI-892437

Protein

rplY

PMID:15690043

Experiment(s):EBI-892437

Protein

rpmB

PMID:15690043

Experiment(s):EBI-892437

Protein

rpsC

PMID:15690043

Experiment(s):EBI-892437

Protein

rpsF

PMID:15690043

Experiment(s):EBI-892437

Protein

rpsR

PMID:15690043

Experiment(s):EBI-892437

Protein

rpsS

PMID:15690043

Experiment(s):EBI-892437

Protein

rpsT

PMID:15690043

Experiment(s):EBI-892437

Protein

rluB

PMID:15690043

Experiment(s):EBI-892437

Protein

rplE

PMID:19402753

MALDI(Z-score):28.463340

Protein

rpsA

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):26.887059

Protein

rplY

PMID:19402753

LCMS(ID Probability):99.0

Protein

rplO

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):25.179672

Protein

hupB

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplT

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplP

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplN

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):7.838609

Protein

rpmB

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsF

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsR

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplU

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsT

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsM

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):14.084270

Protein

rplS

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):18.353672

Protein

hupA

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplR

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):17.053160

Protein

rplI

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):33.508185

Protein

rpsS

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplX

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):12.464277

Protein

rplM

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):25.289364

Protein

rpsD

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):35.519048

Protein

rplF

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):22.038532

Protein

rpsC

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):3.220775

Protein

rplQ

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):3.168755

Protein

rplB

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):19.096082

Protein

rplA

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):22.386967

Protein

rlmL

PMID:19402753

MALDI(Z-score):28.108464

Protein

srmB

PMID:19402753

LCMS(ID Probability):91.3 MALDI(Z-score):27.803343

Protein

aidB

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplD

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):19.683372

Protein

prs

PMID:19402753

MALDI(Z-score):20.443930

Protein

dapF

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):33.322088

Protein

yibL

PMID:19402753

LCMS(ID Probability):99.6

Protein

rnr

PMID:19402753

LCMS(ID Probability):81.9 MALDI(Z-score):27.146759

Protein

yfiF

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):36.478881

Protein

ybcJ

PMID:19402753

LCMS(ID Probability):99.6

Protein

deaD

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):27.659514

Protein

rluB

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):19.012086

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Notes

RppH (formerly NudH/YgdP) is an RNA pyrophosphorylase that removes the 5'-pyrophosphate group and initiates mRNA decay ([1]).

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MIDDDGYRPN VGIVICNRQG QVMWARRFGQ HSWQFPQGGI NPGESAEQAM YRELFEEVGL
SRKDVRILAS TRNWLRYKLP KRLVRWDTKP VCIGQKQKWF LLQLVSGDAE INMQTSSTPE
FDGWRWVSYW YPVRQVVSFK RDVYRRVMKE FASVVMSLQE NTPKPQNASA YRRKRG
Length

176

Mol. Wt

20.794 kDa

pI

10.4 (calculated)

Extinction coefficient

54,430 - 54,680 (calc based on 7 Y, 8 W, and 2 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

7..150

PF00293 NUDIX domain

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=rppH taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130734

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947300

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009276

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A776

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7459

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13091

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947300

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004022

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2896

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

Ecoli K-12

35.789+/-0.328

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

Protein

E. coli K-12 MG1655

626

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

233

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

575

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

ptsP

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:2966979..2967019 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

EcoliGenExpDB:b2830 (EcoliWiki Page)

Summary of data for nudH from multiple microarray studies

microarray

GEO Profiles:b2830 (EcoliWiki Page)

NCBI GEO profiles for nudH

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (2966928..2967700) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ13; Well:B7[8]

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Notes

Accessions Related to nudH Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:G7459

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2896

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

GenExpDB:b2830

EcoGene

EcoGene:EG13091

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004022

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009276

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT3G10620 (score: 1.000; bootstrap: 100%)
  • AT5G06340 (score: 0.359)
  • AT1G30110 (score: 0.275)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0189010 (score: 1.000; bootstrap: 100%)
  • DDB0187173 (score: 0.509)

From Inparanoid:20070104

Oryza gramene

  • O24005 (score: 1.000; bootstrap: 100%)
  • Q7XPT6 (score: 0.623)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000013949 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

YGDP

From SHIGELLACYC

E. coli O157

YGDP

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00293 NUDIX domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:55811

EcoCyc

EcoCyc:G7459

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13091

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004022

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2896

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009276

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Deana, A et al. (2008) The bacterial enzyme RppH triggers messenger RNA degradation by 5' pyrophosphate removal. Nature 451 355-8 PubMed
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 3.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  5. ↑ 5.0 5.1 5.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  6. ↑ 6.0 6.1 6.2 CGSC: The Coli Genetics Stock Center
  7. ↑ 7.0 7.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  8. ↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

Categories

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