rpoE:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

rpoE

Gene Synonym(s)

ECK2571, b2573, JW2557, sigE[1], sigE

Product Desc.

sigmaE[2]; RNA polymerase, sigma 24 (sigma E) factor[3];

Component of RNA polymerase sigma 24[2][3]

RNA polymerase subunit, extracytoplasmic stress sigma E; role in high temperature and oxidative stress response[4]

Product Synonyms(s)

RNA polymerase, sigma 24 (sigma E) factor[1], B2573[2][1], SigE[2][1], RpoE[2][1], sigma E factor[2][1], sigma24 factor[2][1], sigma 24 factor[3][1] , ECK2571, JW2557, sigE, b2573

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): rpoE-rseABC[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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rpoE is transiently induced after a cold shock, dependent on the presence of PNPase. Induced by, and increases resistance to, Cd(II), Zn(II) and Cu(II). rpoE is an essential gene that can be disrupted only in the presence of unlinked suppressor mutations, e.g. ydcQ (De Las Penas, 1997, Button, 2006).[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

rpoE

Mnemonic

RNA polymerase

Synonyms

ECK2571, b2573, JW2557, sigE[1], sigE

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

58.35 minutes 

MG1655: 2708034..2707459
<gbrowseImage> name=NC_000913:2707459..2708034 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2631505..2630930
<gbrowseImage> name=NC_012967:2630930..2631505 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 2593264..2593839
<gbrowseImage> name=NC_012759:2593264..2593839 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 2708668..2708093
<gbrowseImage> name=NC_007779:2708093..2708668 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 2799799..2799224
<gbrowseImage> name=NC_010473:2799224..2799799 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

rpoEL25P

L25P

(in rpoE-25; loss of activity)

Strain variation; seeded from UniProt:P0AGB6

rpoES172P

S172P

(in rpoE-172; loss of activity)

Strain variation; seeded from UniProt:P0AGB6

rpoER178G

R178G

(in rpoE-178; loss of activity)

Strain variation; seeded from UniProt:P0AGB6

rpoE(del)

deletion

Change in the expression of a gene

An increase in the expression of rybB gene

PMID:17416652

See figure 3B

rpoE2072::Tn10dCam

Insertion

Mutagenesis Rate

Decrease of Stress Induced Mutagenesis (SIM).

PMID:23224554

Parent Strain: SMR4562 Experimental Strain: SMR5236

The mutation conferred a strong reduction SIM, with mutant frequency being decreased by over 90 percent. See Table S3 for full experimental data.

rpoE2072::Tn10dCam

Insertion

Sensitivity to

SDS-EDTA Sensitivity

PMID:23224554

Parent Strain: SMR4562 Experimental Strain: SMR5236

The mutation conferred an increase in SDS-EDTA sensitivity. See table S7 and S1 for a summary of Experimental Data.

CAG45114 rpoE2072::Tn10dCam

Insertion

SigmaE activity

Decrease in SigmaE activity

PMID:23224554

Parental Strain: CAG45114 Experimental Strain:SMR15311

See table S11 for full experimental results.

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Notes

PEC shows rpoE as nonessential, but it is essential[5].


Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW2557

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCAGCGAGCAGTTAACGGACCA

Primer 2:CCACGCCTGATAAGCGGTTGAAC

4A12

Kohara Phage

Genobase

PMID:3038334

zfh-208::Tn10

Linked marker

CAG18481 = CGSC7417[6]

est. P1 cotransduction: 14% [7]
Synonyms:zff-208::Tn10

nadB51::Tn10

Linked marker

CAG18480 = CGSC7419[6]

est. P1 cotransduction: 93% [7]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG11897

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11897

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001827

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:947050

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1843

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008467

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

RpoE

Synonyms

RNA polymerase, sigma 24 (sigma E) factor[1], B2573[2][1], SigE[2][1], RpoE[2][1], sigma E factor[2][1], sigma24 factor[2][1], sigma 24 factor[3][1] , ECK2571, JW2557, sigE, b2573

Product description

sigmaE[2]; RNA polymerase, sigma 24 (sigma E) factor[3];

Component of RNA polymerase sigma 24[2][3]

RNA polymerase subunit, extracytoplasmic stress sigma E; role in high temperature and oxidative stress response[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0003677

DNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000838

F

Seeded from EcoCyc (v14.0)

complete

GO:0003677

DNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR007627

F

Seeded from EcoCyc (v14.0)

complete

GO:0003677

DNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013249

F

Seeded from EcoCyc (v14.0)

complete

GO:0003677

DNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013324

F

Seeded from EcoCyc (v14.0)

complete

GO:0003677

DNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013325

F

Seeded from EcoCyc (v14.0)

complete

GO:0003677

DNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR014284

F

Seeded from EcoCyc (v14.0)

complete

GO:0003677

DNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR014286

F

Seeded from EcoCyc (v14.0)

complete

GO:0003677

DNA binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0238

F

Seeded from EcoCyc (v14.0)

complete

GO:0003700

transcription factor activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000838

F

Seeded from EcoCyc (v14.0)

complete

GO:0003700

transcription factor activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR007627

F

Seeded from EcoCyc (v14.0)

complete

GO:0003700

transcription factor activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013249

F

Seeded from EcoCyc (v14.0)

complete

GO:0003700

transcription factor activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013324

F

Seeded from EcoCyc (v14.0)

complete

GO:0003700

transcription factor activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013325

F

Seeded from EcoCyc (v14.0)

complete

GO:0003700

transcription factor activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR014284

F

Seeded from EcoCyc (v14.0)

complete

GO:0003700

transcription factor activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR014286

F

Seeded from EcoCyc (v14.0)

complete

GO:0006350

transcription

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0804

P

Seeded from EcoCyc (v14.0)

complete

GO:0006352

transcription initiation

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000838

P

Seeded from EcoCyc (v14.0)

complete

GO:0006352

transcription initiation

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR007627

P

Seeded from EcoCyc (v14.0)

complete

GO:0006352

transcription initiation

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013249

P

Seeded from EcoCyc (v14.0)

complete

GO:0006352

transcription initiation

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013324

P

Seeded from EcoCyc (v14.0)

complete

GO:0006352

transcription initiation

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013325

P

Seeded from EcoCyc (v14.0)

complete

GO:0006352

transcription initiation

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR014284

P

Seeded from EcoCyc (v14.0)

complete

GO:0006352

transcription initiation

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR014286

P

Seeded from EcoCyc (v14.0)

complete

GO:0006355

regulation of transcription, DNA-dependent

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000838

P

Seeded from EcoCyc (v14.0)

complete

GO:0006355

regulation of transcription, DNA-dependent

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR007627

P

Seeded from EcoCyc (v14.0)

complete

GO:0006355

regulation of transcription, DNA-dependent

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013249

P

Seeded from EcoCyc (v14.0)

complete

GO:0006355

regulation of transcription, DNA-dependent

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013324

P

Seeded from EcoCyc (v14.0)

complete

GO:0006355

regulation of transcription, DNA-dependent

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013325

P

Seeded from EcoCyc (v14.0)

complete

GO:0006355

regulation of transcription, DNA-dependent

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR014284

P

Seeded from EcoCyc (v14.0)

complete

GO:0006355

regulation of transcription, DNA-dependent

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR014286

P

Seeded from EcoCyc (v14.0)

complete

GO:0006355

regulation of transcription, DNA-dependent

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0731

P

Seeded from EcoCyc (v14.0)

complete

GO:0006950

response to stress

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0346

P

Seeded from EcoCyc (v14.0)

complete

GO:0016987

sigma factor activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000838

F

Seeded from EcoCyc (v14.0)

complete

GO:0016987

sigma factor activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR007627

F

Seeded from EcoCyc (v14.0)

complete

GO:0016987

sigma factor activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013249

F

Seeded from EcoCyc (v14.0)

complete

GO:0016987

sigma factor activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013324

F

Seeded from EcoCyc (v14.0)

complete

GO:0016987

sigma factor activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013325

F

Seeded from EcoCyc (v14.0)

complete

GO:0016987

sigma factor activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR014284

F

Seeded from EcoCyc (v14.0)

complete

GO:0016987

sigma factor activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR014286

F

Seeded from EcoCyc (v14.0)

complete

GO:0016987

sigma factor activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0731

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of RNA polymerase sigma 24

could be indirect

Protein

rcsA

PMID:16606699

Experiment(s):EBI-1143317

Protein

cheZ

PMID:16606699

Experiment(s):EBI-1143317

Protein

rpsD

PMID:16606699

Experiment(s):EBI-1143317

Protein

glpD

PMID:16606699

Experiment(s):EBI-1143317

Protein

rpoC

PMID:16606699

Experiment(s):EBI-1143317

Protein

yggG

PMID:16606699

Experiment(s):EBI-1143317

Protein

dnaB

PMID:16606699

Experiment(s):EBI-1143317

Protein

yfbU

PMID:16606699

Experiment(s):EBI-1143317

Protein

yjjK

PMID:16606699

Experiment(s):EBI-1143317

Protein

rplQ

PMID:16606699

Experiment(s):EBI-1143317

Protein

ygeR

PMID:16606699

Experiment(s):EBI-1143317

Protein

btuD

PMID:16606699

Experiment(s):EBI-1143317

Protein

rpoB

PMID:16606699

Experiment(s):EBI-1143317
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

Cytoplasm

PMID:15774872, PMID:16597971, PMID:11777003

EchoLocation:rpoE

cytoplasm

From EcoCyc[3]


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSEQLTDQVL VERVQKGDQK AFNLLVVRYQ HKVASLVSRY VPSGDVPDVV QEAFIKAYRA
LDSFRGDSAF YTWLYRIAVN TAKNYLVAQG RRPPSSDVDA IEAENFESGG ALKEISNPEN
LMLSEELRQI VFRTIESLPE DLRMAITLRE LDGLSYEEIA AIMDCPVGTV RSRIFRAREA
IDNKVQPLIR R
Length

191

Mol. Wt

21.695 kDa

pI

5.3 (calculated)

Extinction coefficient

15,930 - 16,055 (calc based on 7 Y, 1 W, and 1 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

25..92

PF04542 Sigma-70 region 2

PMID:19920124

Domain

122..181

PF08281 Sigma-70, region 4

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=rpoE taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130498

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947050

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008467

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0AGB6

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11897

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11897

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947050

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001827

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1843

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

2.29E+02

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

E. coli K-12 MG1655

532

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

212

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

504

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

rpoE-rseABC

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:2708014..2708054 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b2573 (EcoliWiki Page)

NCBI GEO profiles for rpoE

microarray

GenExpDB:b2573 (EcoliWiki Page)

Summary of data for rpoE from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (2707932..2708492) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ20; Well:G4[8]

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Notes

Accessions Related to rpoE Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG11897

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1843

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b2573

EcoGene

EcoGene:EG11897

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001827

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008467

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000027852 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

RPOE

From SHIGELLACYC

E. coli O157

RPOE

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF04542 Sigma-70 region 2

Superfamily (EcoliWiki Page)

SUPERFAMILY:88659

Superfamily (EcoliWiki Page)

SUPERFAMILY:88946

Pfam (EcoliWiki Page)

PF08281 Sigma-70, region 4

EcoCyc

EcoCyc:EG11897

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11897

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001827

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1843

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008467

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 1.14 1.15 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 2.13 2.14 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 3.6 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ De Las Peñas, A et al. (1997) SigmaE is an essential sigma factor in Escherichia coli. J. Bacteriol. 179 6862-4 PubMed
  6. ↑ 6.0 6.1 CGSC: The Coli Genetics Stock Center
  7. ↑ 7.0 7.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  8. ↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

Categories

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