rplO:Gene
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Interactions | Genetic Resources | Accessions | Links | References | Suggestions |
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Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
rplO |
|---|---|
| Mnemonic |
Ribosomal protein, large |
| Synonyms |
ECK3288, b3301, JW3263[1], JW3263 |
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Notes
Location(s) and DNA Sequence
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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
MG1655 |
74.19 minutes |
MG1655: 3442561..3442127 |
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NC_012967: 3372444..3372010 |
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NC_012759: 3329284..3329718 |
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W3110 |
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W3110: 4195877..4196311 |
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DH10B: 3540306..3539872 |
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Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
|
Coding Start (SO:0000323) |
3442127 |
Edman degradation |
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Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
rplO5 |
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ErmDep rplO |
Protein L15 was removed |
Growth Phenotype |
Loss of erythromycin translation |
It is unknown if erythromycin sensitivity developed. There was one mutant, AM16(Table 1). See Figure 1. | |||
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rplO in strains LE2-7 and LE5-1 |
Resistant to |
Resistance to Lincomycin |
Strains: LE2-7 and LE5-1 |
figure 2 | |||
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Notes
Genetic Interactions
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| Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
|---|---|---|---|---|---|---|
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Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
JW3263 |
Plasmid clone |
Status:Clone OK Primer 1:GCCCGTTTAAATACTCTGTCTCC Primer 2:CCTTCCTCGATTTTACCGCCAGC | |
|
Kohara Phage |
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|
Linked marker |
est. P1 cotransduction: 63% [8] | ||
|
Linked marker |
est. P1 cotransduction: 4% [8] | ||
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Notes
Links
| Name | URL | Comments |
|---|---|---|
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ Giorginis, S & Chen, R (1977) The primary structure of protein L15 located at the peptidyltransferase center of Escherichia coli ribosomes. FEBS Lett. 84 347-50 PubMed
- ↑ Dabbs, ER (1979) Selection for Escherichia coli mutants with proteins missing from the ribosome. J. Bacteriol. 140 734-7 PubMed
- ↑ Hummel, H et al. (1979) Analysis of lincomycin resistance mutations in Escherichia coli. Mol. Gen. Genet. 169 345-7 PubMed
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
- ↑ 7.0 7.1 CGSC: The Coli Genetics Stock Center
- ↑ 8.0 8.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
