rluB:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

rluB

Gene Synonym(s)

ECK1263, b1269, JW1261, yciL[1], yciL

Product Desc.

23S rRNA pseudouridine synthase[2][3]

23S rRNA U2605 pseudouridine synthase[4]

Product Synonyms(s)

23S rRNA pseudouridylate synthase[1], B1269[2][1], RluB[2][1], YciL[2][1] , ECK1263, JW1261, yciL, b1269

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): rluB[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Ribosome-associated protein (Jiang, 2007).[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

rluB

Mnemonic

rRNA, large, uridine

Synonyms

ECK1263, b1269, JW1261, yciL[1], yciL

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

28.56 minutes 

MG1655: 1324876..1325751
<gbrowseImage> name=NC_000913:1324876..1325751 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 1325224..1326099
<gbrowseImage> name=NC_012967:1325224..1326099 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 1215725..1216600
<gbrowseImage> name=NC_012759:1215725..1216600 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 1328566..1329441
<gbrowseImage> name=NC_007779:1328566..1329441 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 1414272..1415147
<gbrowseImage> name=NC_010473:1414272..1415147 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔrluB (Keio:JW1261)

deletion

deletion

PMID:16738554

Shigen
CGSC9136[5]

rluBD110N,T

D110N,T

Loss of activity

seeded from UniProt:P37765

ΔrluB777::kan

PMID:16738554

CGSC:102732


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Notes

Genetic Interactions

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<protect>

Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW1261

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCAGCGAAAAGCTACAGAAAGT

Primer 2:CCACCGTTATTATTACGTCCGCC

4F1

Kohara Phage

Genobase

PMID:3038334

13F9

Kohara Phage

Genobase

PMID:3038334

trpC83::Tn10

Linked marker

CAG18455 = CGSC7371[5]

est. P1 cotransduction: 78% [6]
Synonyms:trpB83::Tn10

zcj-233::Tn10

Linked marker

CAG12028 = CGSC7373[5]

est. P1 cotransduction: 15% [6]
Synonyms:zci-233::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG12433

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12433

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002288

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:945840

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2329

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004259

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

RluB

Synonyms

23S rRNA pseudouridylate synthase[1], B1269[2][1], RluB[2][1], YciL[2][1] , ECK1263, JW1261, yciL, b1269

Product description

23S rRNA pseudouridine synthase[2][3]

23S rRNA U2605 pseudouridine synthase[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0005737

cytoplasm

C

Seeded from Riley et al 2006 [1].

Missing: evidence, reference

GO:0003723

RNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000748

F

Seeded from EcoCyc (v14.0)

complete

GO:0003723

RNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002942

F

Seeded from EcoCyc (v14.0)

complete

GO:0003723

RNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006145

F

Seeded from EcoCyc (v14.0)

complete

GO:0003723

RNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018496

F

Seeded from EcoCyc (v14.0)

complete

GO:0003723

RNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020103

F

Seeded from EcoCyc (v14.0)

complete

GO:0003723

RNA binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0694

F

Seeded from EcoCyc (v14.0)

complete

GO:0009982

pseudouridine synthase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006145

F

Seeded from EcoCyc (v14.0)

complete

GO:0009982

pseudouridine synthase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020103

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

rplC

PMID:15690043

Experiment(s):EBI-878697, EBI-889536

Protein

rplD

PMID:15690043

Experiment(s):EBI-878697

Protein

rplE

PMID:15690043

Experiment(s):EBI-878697

Protein

rplF

PMID:15690043

Experiment(s):EBI-878697

Protein

rplI

PMID:15690043

Experiment(s):EBI-878697, EBI-889536

Protein

rplM

PMID:15690043

Experiment(s):EBI-878697, EBI-889536

Protein

rpsA

PMID:15690043

Experiment(s):EBI-878697, EBI-889536

Protein

rpsB

PMID:15690043

Experiment(s):EBI-878697

Protein

rpsC

PMID:15690043

Experiment(s):EBI-878697

Protein

rpsD

PMID:15690043

Experiment(s):EBI-878697

Protein

rpsE

PMID:15690043

Experiment(s):EBI-878697, EBI-889536

Protein

rpsG

PMID:15690043

Experiment(s):EBI-878697, EBI-889536

Protein

rpsJ

PMID:15690043

Experiment(s):EBI-878697, EBI-889536

Protein

rpsM

PMID:15690043

Experiment(s):EBI-878697

Protein

srmB

PMID:15690043

Experiment(s):EBI-878697, EBI-889906, EBI-889536

Protein

rnr

PMID:15690043

Experiment(s):EBI-878697, EBI-889536

Protein

ybhF

PMID:15690043

Experiment(s):EBI-878697

Protein

ycbY

PMID:15690043

Experiment(s):EBI-878697

Protein

ygiF

PMID:15690043

Experiment(s):EBI-878697, EBI-889536

Protein

yhiR

PMID:15690043

Experiment(s):EBI-878697, EBI-889536

Protein

aceE

PMID:15690043

Experiment(s):EBI-878697

Protein

aidB

PMID:15690043

Experiment(s):EBI-878697

Protein

hrpA

PMID:15690043

Experiment(s):EBI-878697, EBI-889536

Protein

pssA

PMID:15690043

Experiment(s):EBI-878697

Protein

rplA

PMID:15690043

Experiment(s):EBI-878697, EBI-889536

Protein

rplB

PMID:15690043

Experiment(s):EBI-878697

Protein

pnp

PMID:15690043

Experiment(s):EBI-878697, EBI-883913

Protein

yciK

PMID:16606699

Experiment(s):EBI-1139392

Protein

rplD

PMID:16606699

Experiment(s):EBI-1139392

Protein

trpH

PMID:16606699

Experiment(s):EBI-1139392

Protein

matC

PMID:16606699

Experiment(s):EBI-1139392

Protein

yhcA

PMID:16606699

Experiment(s):EBI-1139392

Protein

alaS

PMID:15690043

Experiment(s):EBI-889536

Protein

rplS

PMID:15690043

Experiment(s):EBI-889536

Protein

rplU

PMID:15690043

Experiment(s):EBI-889536

Protein

rplV

PMID:15690043

Experiment(s):EBI-889536

Protein

rplX

PMID:15690043

Experiment(s):EBI-889536

Protein

rplY

PMID:15690043

Experiment(s):EBI-889536

Protein

rpmB

PMID:15690043

Experiment(s):EBI-889536

Protein

rpsF

PMID:15690043

Experiment(s):EBI-889536

Protein

rpsN

PMID:15690043

Experiment(s):EBI-889536

Protein

rpsP

PMID:15690043

Experiment(s):EBI-889536

Protein

rpsR

PMID:15690043

Experiment(s):EBI-889536

Protein

rpsU

PMID:15690043

Experiment(s):EBI-889536

Protein

yhbP

PMID:15690043

Experiment(s):EBI-889536

Protein

yhiN

PMID:15690043

Experiment(s):EBI-889536

Protein

yibL

PMID:15690043

Experiment(s):EBI-889536

Protein

rluE

PMID:15690043

Experiment(s):EBI-889536

Protein

rpsT

PMID:15690043

Experiment(s):EBI-889536

Protein

alaS

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsJ

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):10.392078

Protein

rpmB

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsN

PMID:19402753

LCMS(ID Probability):99.6

Protein

hupA

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):8.532802

Protein

rpsP

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplY

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplS

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):14.060385

Protein

hupB

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsT

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplU

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsF

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplP

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):2.924285

Protein

rpsM

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):13.939772

Protein

rpsA

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):23.063409

Protein

rplM

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):26.375559

Protein

rpsS

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplI

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):27.796292

Protein

rpsC

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):39.720713

Protein

rplE

PMID:19402753

MALDI(Z-score):24.175743

Protein

rplA

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):49.687349

Protein

ihfA

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsD

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):33.716981

Protein

malP

PMID:19402753

MALDI(Z-score):25.062476

Protein

rplX

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):9.289736

Protein

rplB

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):38.386342

Protein

yhiN

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplT

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsR

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplO

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):9.822047

Protein

rplD

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):11.464963

Protein

rplR

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsU

PMID:19402753

LCMS(ID Probability):99.6

Protein

yhbY

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):29.921344

Protein

rplF

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):21.056102

Protein

yeeX

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):27.920160

Protein

rplQ

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):8.078623

Protein

yihI

PMID:19402753

LCMS(ID Probability):99.6

Protein

infC

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):9.079176

Protein

ygiF

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):38.545635

Protein

aidB

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):7.165941

Protein

yfiF

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):39.439746

Protein

hfq

PMID:19402753

LCMS(ID Probability):91.3 MALDI(Z-score):34.025282

Protein

srmB

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):27.618726

Protein

ybcJ

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):36.425657

Protein

rnr

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):28.384439

Protein

pssA

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):27.564573

Protein

yhbP

PMID:19402753

LCMS(ID Probability):99.6

Protein

dapF

PMID:19402753

LCMS(ID Probability):99.0 MALDI(Z-score):4.519301

Protein

hrpA

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):18.667898

Protein

yibL

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):11.691034

Protein

rlmL

PMID:19402753

MALDI(Z-score):29.013329

Protein

rluC

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):38.535535

Protein

yhiR

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):39.378168

Protein

rluE

PMID:19402753

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSEKLQKVLA RAGHGSRREI ESIIEAGRVS VDGKIAKLGD RVEVTPGLKI RIDGHLISVR
ESAEQICRVL AYYKPEGELC TRNDPEGRPT VFDRLPKLRG ARWIAVGRLD VNTCGLLLFT
TDGELANRLM HPSREVEREY AVRVFGQVDD AKLRDLSRGV QLEDGPAAFK TIKFSGGEGI
NQWYNVTLTE GRNREVRRLW EAVGVQVSRL IRVRYGDIPL PKGLPRGGWT ELDLAQTNYL
RELVELPPET SSKVAVEKDR RRMKANQIRR AVKRHSQVSG GRRSGGRNNN G
Length

291

Mol. Wt

32.711 kDa

pI

10.4 (calculated)

Extinction coefficient

30,940 - 31,315 (calc based on 6 Y, 4 W, and 3 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

3..57

PF01479 S4 domain

PMID:19920124

Domain

68..202

PF00849 RNA pseudouridylate synthase

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=rluB taxon=562,83333 </beststructure>

Models

View models at:

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</protect>

Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129230

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945840

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004259

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P37765

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG12433

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12433

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945840

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002288

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2329

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

3.68E+02

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

Ecoli K-12

51.674+/-0.303

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

Protein

E. coli K-12 MG1655

6949

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

899

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

3224

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

rluB

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Figure courtesy of RegulonDB

</protect>

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:1324856..1324896 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

</protect>

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b1269 (EcoliWiki Page)

NCBI GEO profiles for rluB

microarray

GenExpDB:b1269 (EcoliWiki Page)

Summary of data for rluB from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (1324571..1324948) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ14; Well:F5[7]

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Notes

Accessions Related to rluB Expression

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Database Accession Notes

EcoCyc

EcoCyc:EG12433

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2329

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b1269

EcoGene

EcoGene:EG12433

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002288

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004259

Escherichia coli str. K-12 substr. MG1655

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Evolution

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Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Dictyostelium discoideum

  • DDB0167086 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

YCIL

From SHIGELLACYC

E. coli O157

YCIL

From ECOO157CYC

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Families

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Database Accession Notes

Pfam (EcoliWiki Page)

PF01479 S4 domain

Panther (EcoliWiki Page)

PTHR21600:SF2

Superfamily (EcoliWiki Page)

SUPERFAMILY:55120

Superfamily (EcoliWiki Page)

SUPERFAMILY:55174

Pfam (EcoliWiki Page)

PF00849 RNA pseudouridylate synthase

EcoCyc

EcoCyc:EG12433

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12433

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002288

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2329

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004259

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  7. ↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

Categories

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