prs:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

prs

Gene Synonym(s)

prsA, ECK1195, b1207, JW1198, dnaR[1][2], dnaR

Product Desc.

Phosphoribosylpyrophosphate synthase[3]

Product Synonyms(s)

phosphoribosylpyrophosphate synthase[1], B1207[4][1], DnaR[4][1], Prs[4][1], PrsA[4][1] , dnaR, ECK1195, JW1198, prsA, b1207

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): lolB-ispE-prsA[4], lolB-ispE-prs, prsA[4], OP00286

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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HT_Cmplx20_Cyt: Prs+RbsK.[3]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

prs

Mnemonic

PRPP synthase

Synonyms

prsA, ECK1195, b1207, JW1198, dnaR[1][2], dnaR

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

27.16 minutes 

MG1655: 1261098..1260151
<gbrowseImage> name=NC_000913:1260151..1261098 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 1261078..1262025
<gbrowseImage> name=NC_012967:1261078..1262025 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 1148872..1149819
<gbrowseImage> name=NC_012759:1148872..1149819 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 1263452..1262505
<gbrowseImage> name=NC_007779:1262505..1263452 source=W3110 preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

1260154

Edman degradation

PMID:9298646
PMID:11248028


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

prsD129A

D129A

(in mutant PRSA1)

Strain variation; seeded from UniProt:P0A717

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Notes

Genetic Interactions

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<protect>

Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691

Status:

Primer 1:

Primer 2:

12A3

Kohara Phage

Genobase

PMID:3038334

4D10

Kohara Phage

Genobase

PMID:3038334

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10774

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10774

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000765

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:945772

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0767

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004054

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

PrsA

Synonyms

phosphoribosylpyrophosphate synthase[1], B1207[4][1], DnaR[4][1], Prs[4][1], PrsA[4][1] , dnaR, ECK1195, JW1198, prsA, b1207

Product description

Phosphoribosylpyrophosphate synthase[3]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0000166

nucleotide binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc (v14.0)

complete

GO:0000287

magnesium ion binding

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00583

F

Seeded from EcoCyc (v14.0)

complete

GO:0000287

magnesium ion binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000842

F

Seeded from EcoCyc (v14.0)

complete

GO:0000287

magnesium ion binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005946

F

Seeded from EcoCyc (v14.0)

complete

GO:0000287

magnesium ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0460

F

Seeded from EcoCyc (v14.0)

complete

GO:0004749

ribose phosphate diphosphokinase activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00583

F

Seeded from EcoCyc (v14.0)

complete

GO:0004749

ribose phosphate diphosphokinase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000842

F

Seeded from EcoCyc (v14.0)

complete

GO:0004749

ribose phosphate diphosphokinase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005946

F

Seeded from EcoCyc (v14.0)

complete

GO:0004749

ribose phosphate diphosphokinase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:2.7.6.1

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0067

F

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00583

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0086

C

Seeded from EcoCyc (v14.0)

complete

GO:0009116

nucleoside metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000836

P

Seeded from EcoCyc (v14.0)

complete

GO:0009156

ribonucleoside monophosphate biosynthetic process

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00583

P

Seeded from EcoCyc (v14.0)

complete

GO:0009156

ribonucleoside monophosphate biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000842

P

Seeded from EcoCyc (v14.0)

complete

GO:0009165

nucleotide biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005946

P

Seeded from EcoCyc (v14.0)

complete

GO:0009165

nucleotide biosynthetic process

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0545

P

Seeded from EcoCyc (v14.0)

complete

GO:0016301

kinase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0418

F

Seeded from EcoCyc (v14.0)

complete

GO:0016740

transferase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0808

F

Seeded from EcoCyc (v14.0)

complete

GO:0046872

metal ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0479

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

npdA

PMID:15690043

Experiment(s):EBI-880430, EBI-881344, EBI-885898

Protein

dnaJ

PMID:15690043

Experiment(s):EBI-880430, EBI-885898

Protein

dnaK

PMID:15690043

Experiment(s):EBI-880430

Protein

groL

PMID:15690043

Experiment(s):EBI-880430, EBI-885898

Protein

mreB

PMID:15690043

Experiment(s):EBI-880430

Protein

rplB

PMID:15690043

Experiment(s):EBI-880430, EBI-885898

Protein

rplE

PMID:15690043

Experiment(s):EBI-880430

Protein

rplJ

PMID:15690043

Experiment(s):EBI-880430

Protein

rplP

PMID:15690043

Experiment(s):EBI-880430, EBI-885898

Protein

rpsB

PMID:15690043

Experiment(s):EBI-880430, EBI-885898

Protein

rpsC

PMID:15690043

Experiment(s):EBI-880430, EBI-885898

Protein

rpsD

PMID:15690043

Experiment(s):EBI-880430, EBI-885898

Protein

rpsG

PMID:15690043

Experiment(s):EBI-880430, EBI-885898

Protein

tufA

PMID:15690043

Experiment(s):EBI-880430, EBI-885898

Protein

rluB

PMID:15690043

Experiment(s):EBI-880430

Protein

yibA

PMID:15690043

Experiment(s):EBI-880430

Protein

nusG

PMID:15690043

Experiment(s):EBI-885898

Protein

rho

PMID:15690043

Experiment(s):EBI-885898

Protein

rplC

PMID:15690043

Experiment(s):EBI-885898

Protein

rplD

PMID:15690043

Experiment(s):EBI-885898

Protein

rplI

PMID:15690043

Experiment(s):EBI-885898

Protein

rplK

PMID:15690043

Experiment(s):EBI-885898

Protein

rplL

PMID:15690043

Experiment(s):EBI-885898

Protein

rplM

PMID:15690043

Experiment(s):EBI-885898

Protein

rplN

PMID:15690043

Experiment(s):EBI-885898

Protein

rplO

PMID:15690043

Experiment(s):EBI-885898

Protein

rplS

PMID:15690043

Experiment(s):EBI-885898

Protein

rplU

PMID:15690043

Experiment(s):EBI-885898

Protein

rplV

PMID:15690043

Experiment(s):EBI-885898

Protein

rplW

PMID:15690043

Experiment(s):EBI-885898

Protein

rplX

PMID:15690043

Experiment(s):EBI-885898

Protein

rpmB

PMID:15690043

Experiment(s):EBI-885898

Protein

rpsE

PMID:15690043

Experiment(s):EBI-885898

Protein

rpsH

PMID:15690043

Experiment(s):EBI-885898

Protein

rpsJ

PMID:15690043

Experiment(s):EBI-885898

Protein

rpsP

PMID:15690043

Experiment(s):EBI-885898

Protein

rpsT

PMID:15690043

Experiment(s):EBI-885898

Protein

yfiF

PMID:15690043

Experiment(s):EBI-885898

Protein

yrfD

PMID:15690043

Experiment(s):EBI-885898

Protein

groL

PMID:16606699

Experiment(s):EBI-1139177

Protein

groL

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):17.053160

Protein

groS

PMID:19402753

LCMS(ID Probability):99.0 MALDI(Z-score):17.053160

Protein

rplP

PMID:19402753

LCMS(ID Probability):99.0 MALDI(Z-score):17.053160

Protein

tufB

PMID:19402753

MALDI(Z-score):19.993235

Protein

rplB

PMID:19402753

LCMS(ID Probability):99.0 MALDI(Z-score):17.053160

Protein

rpsD

PMID:19402753

LCMS(ID Probability):99.0 MALDI(Z-score):17.053160

Protein

rpsC

PMID:19402753

LCMS(ID Probability):99.0 MALDI(Z-score):17.053160

Protein

clpA

PMID:19402753

MALDI(Z-score):22.990623

Protein

dnaJ

PMID:19402753

LCMS(ID Probability):99.0 MALDI(Z-score):17.053160

Protein

srmB

PMID:19402753

MALDI(Z-score):27.524038

Protein

rluB

PMID:19402753

LCMS(ID Probability):90.0 MALDI(Z-score):36.244522

Protein

recE

PMID:19402753

MALDI(Z-score):28.522026

Protein

cobB

PMID:19402753

LCMS(ID Probability):99.0 MALDI(Z-score):37.808327

Protein

lpxB

PMID:19402753

MALDI(Z-score):37.191021

Protein

hofM

PMID:19402753

LCMS(ID Probability):99.0

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MPDMKLFAGN ATPELAQRIA NRLYTSLGDA AVGRFSDGEV SVQINENVRG GDIFIIQSTC
APTNDNLMEL VVMVDALRRA SAGRITAVIP YFGYARQDRR VRSARVPITA KVVADFLSSV
GVDRVLTVDL HAEQIQGFFD VPVDNVFGSP ILLEDMLQLN LDNPIVVSPD IGGVVRARAI
AKLLNDTDMA IIDKRRPRAN VSQVMHIIGD VAGRDCVLVD DMIDTGGTLC KAAEALKERG
AKRVFAYATH PIFSGNAANN LRNSVIDEVV VCDTIPLSDE IKSLPNVRTL TLSGMLAEAI
RRISNEESIS AMFEH
Length

315

Mol. Wt

34.218 kDa

pI

5.2 (calculated)

Extinction coefficient

5,960 - 6,460 (calc based on 4 Y, 0 W, and 4 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Initiator Methionine

1

Removed

UniProt:P0A717

Domain

149..250

PF00156 Phosphoribosyl transferase domain

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=prs taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129170

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945772

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004054

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A717

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10774

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10774

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945772

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000765

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0767

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

2.98E+03

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

Ecoli K-12

283.238+/-2.157

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.15682+/-0.00985

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by FISH

PMID:20671182

mRNA

Ecoli K-12

0.387539599

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 MG1655

19750

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

3998

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

4050

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

lolB-ispE-prsA

prsA

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Figure courtesy of RegulonDB

</protect>

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:1261078..1261118 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

</protect>

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b1207 (EcoliWiki Page)

NCBI GEO profiles for prs

microarray

GenExpDB:b1207 (EcoliWiki Page)

Summary of data for prs from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to prs Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10774

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0767

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b1207

EcoGene

EcoGene:EG10774

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000765

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004054

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000013157 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000021459 (score: 1.000; bootstrap: 88%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G32380 (score: 1.000; bootstrap: 100%)
  • AT2G35390 (score: 0.816)
  • AT2G44530 (score: 0.562)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000011618 (score: 1.000; bootstrap: 99%)
  • ENSBTAP00000026261 (score: 0.979)
  • ENSBTAP00000027722 (score: 0.906)
  • ENSBTAP00000033743 (score: 0.821)
  • ENSBTAP00000010164 (score: 0.241)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00036510 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00020107 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000026564 (score: 1.000; bootstrap: 99%)
  • ENSCAFP00000017185 (score: 0.861)
  • ENSCAFP00000011623 (score: 0.781)
  • ENSCAFP00000003608 (score: 0.550)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000004419 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Danio rerio

  • ZDB-CDNA-040425-3890 (score: 1.000; bootstrap: 99%)
  • ZDB-CDNA-050706-10 (score: 0.985)
  • ZDB-GENE-011212-5 (score: 0.985)
  • ZDB-CDNA-040425-3575 (score: 0.830)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0186131 (score: 1.000; bootstrap: 100%)
  • DDB0168827 (score: 0.302)
  • DDB0185586 (score: 0.240)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0036030 (score: 1.000; bootstrap: 100%)
  • FBgn0039790 (score: 0.050)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA19849-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000007837 (score: 1.000; bootstrap: 99%)
  • ENSGALP00000029645 (score: 0.741)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000276174 (score: 1.000; bootstrap: 99%)
  • ENSP00000218027 (score: 1.000; bootstrap: 99%)
  • ENSP00000283289 (score: 0.888)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000012758 (score: 1.000; bootstrap: 99%)
  • ENSMMUP00000014891 (score: 0.578)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000021634 (score: 1.000; bootstrap: 99%)
  • ENSMODP00000017636 (score: 0.928)
  • ENSMODP00000026315 (score: 0.734)

From Inparanoid:20070104

Mus musculus

  • MGI:97775 (score: 1.000; bootstrap: 99%)
  • MGI:97776 (score: 0.929)
  • MGI:1922706 (score: 0.923)
  • MGI:2144955 (score: 0.610)

From Inparanoid:20070104

Oryza gramene

  • Q6Z2L5 (score: 1.000; bootstrap: 100%)
  • Q69XQ6 (score: 0.398)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000038121 (score: 1.000; bootstrap: 99%)
  • ENSPTRP00000032388 (score: 0.899)
  • ENSPTRP00000037123 (score: 0.716)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000043734 (score: 1.000; bootstrap: 99%)
  • ENSRNOP00000005615 (score: 1.000; bootstrap: 99%)
  • ENSRNOP00000040723 (score: 0.982)
  • ENSRNOP00000048319 (score: 0.926)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YHL011C (score: 1.000; bootstrap: 100%)
  • YER099C (score: 0.390)
  • YBL068W (score: 0.362)
  • YOL061W (score: 0.083)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPCC16206c (score: 1.000; bootstrap: 100%)
  • SPAC4A84 (score: 0.083)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000129872 (score: 1.000; bootstrap: 98%)
  • NEWSINFRUP00000132009 (score: 0.728)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00015834001 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000011720 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Shigella flexneri

PRSA

From SHIGELLACYC

E. coli O157

PRSA

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00156 Phosphoribosyl transferase domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:53271

EcoCyc

EcoCyc:EG10774

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10774

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000765

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0767

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004054

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  4. ↑ 4.0 4.1 4.2 4.3 4.4 4.5 4.6 4.7 4.8 4.9 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

Categories

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