pldA:Gene
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Interactions | Genetic Resources | Accessions | Links | References | Suggestions |
<protect>
Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
pldA |
|---|---|
| Mnemonic |
Phospholipase, detergent resistant |
| Synonyms |
ECK3815, b3821, JW3794[1], JW3794 |
| edit table |
</protect>
Notes
Location(s) and DNA Sequence
<protect>
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
MG1655 |
86.28 minutes |
MG1655: 4002885..4003754 |
||
|
NC_012967: 3969297..3970166 |
||||
|
NC_012759: 3892554..3893423 |
||||
|
W3110 |
|
W3110: 3631819..3630950 |
||
|
DH10B: 4101805..4102674 |
||||
| edit table |
</protect>
Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
|
Coding Start (SO:0000323) |
4002945 |
Edman degradation |
| ||
| edit table |
<protect></protect>
Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
ΔpldA (Keio:JW3794) |
deletion |
deletion |
|||||
|
pldAS172F |
S172F |
Inactive protein |
seeded from UniProt:P0A921 | ||||
|
pldA1 |
|||||||
|
pldA20(del-ins)::kan |
|||||||
|
ΔpldA766::kan |
|||||||
|
pldA in strain S17 |
Resistant to |
Mutant deficient in both detergent-resistant phospholipase A and detergent-sensitive phospholipase A are resistant to Actinomycin D in the presence of EDTA. |
Strain: S17 |
||||
|
pldA in strain NL101 |
Resistant to |
Resistant to actinomycin D in the presence of EDTA |
Strain: NL101 |
| |||
| edit table |
<protect></protect>
Notes
Genetic Interactions
<protect>
| Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
|---|---|---|---|---|---|---|
| edit table |
</protect>
Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
JW3794 |
Plasmid clone |
Status:Clone OK Primer 1:GCCCGGACTCTGCAGGGCTGGTT Primer 2:CCAAACAAATCGTTTAGCATAAC | |
|
Kohara Phage |
|||
|
Linked marker |
est. P1 cotransduction: 10% [8] | ||
|
metEo-3079::Tn10 |
Linked marker |
est. P1 cotransduction: 82% [8] | |
| edit table |
<protect></protect>
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
| edit table |
<protect></protect>
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
<protect>
References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ Homma, H et al. (1984) The DNA sequence encoding pldA gene, the structural gene for detergent-resistant phospholipase A of E. coli. J. Biochem. 96 1655-64 PubMed
- ↑ 3.0 3.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
- ↑ 4.0 4.1 4.2 CGSC: The Coli Genetics Stock Center
- ↑ 5.0 5.1 Hardaway, KL & Buller, CS (1979) Effect of ethylenediaminetetraacetate on phospholipids and outer membrane function in Escherichia coli. J. Bacteriol. 137 62-8 PubMed
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
- ↑ 8.0 8.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
