obgE:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

obgE

Gene Synonym(s)

ECK3172, b3183, JW3150, cgtA, obg, yhbZ[1], yhbZ

Product Desc.

GTPase involved in DNA replication and ribosome assembly[2][3]

DNA-binding GTPase involved in cell partioning and DNA repair; involved in ribosome assembly; GTP-bound form associates with 50S ribosomal subunits[4]

Product Synonyms(s)

GTPase involved in cell partioning and DNA repair[1], B3183[2][1], YhbZ[2][1], CgtA[2][1], ObgE[2][1], Obg[2][1] , cgtA, ECK3172, JW3150, obg, yhbZ, b3183

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): obgE[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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obgE mutants have lowered DnaA and elevated basal level ppGpp. obgE is required for phage lambda development. B. subtilis Obg binds ppGpp. Binds TrxA (Kumar, 2004).[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

obgE

Mnemonic

Common GTP-binding protein

Synonyms

ECK3172, b3183, JW3150, cgtA, obg, yhbZ[1], yhbZ

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

71.74 minutes 

MG1655: 3329776..3328604
<gbrowseImage> name=NC_000913:3328604..3329776 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 3265816..3266988
<gbrowseImage> name=NC_012967:3265816..3266988 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 3215752..3216924
<gbrowseImage> name=NC_012759:3215752..3216924 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 3331609..3330437
<gbrowseImage> name=NC_007779:3330437..3331609 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 3427521..3426349
<gbrowseImage> name=NC_010473:3426349..3427521 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

obgED85N

D85N

Temperature-sensitive for growth at 42 degrees Celsius, defects in chromosome partitioning; when associated with E-80

seeded from UniProt:P42641

obgEG80E

G80E

Temperature-sensitive for growth at 42 degrees Celsius, defects in chromosome partitioning; when associated with N-85

seeded from UniProt:P42641

obgEP168V

P168V

Increased sensitivity to DNA replication inhibitors upon overexpression

seeded from UniProt:P42641

obgES314P

S314P

Severe growth defect at 42 degrees Celsius. Decreased levels of some ribosomal proteins, altered PTMs of others

seeded from UniProt:P42641

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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW3150

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCAAGTTTGTTGATGAAGCATC

Primer 2:CCACGCTTGTAAATGAACTCAA

18H7

Kohara Phage

Genobase

PMID:3038334

14F11

Kohara Phage

Genobase

PMID:3038334

aer-3075::Tn10

Linked marker

CAG12152 = CGSC7438[5]

est. P1 cotransduction: % [6]
Synonyms:zgh-3075::Tn10, zgj-3075::Tn10

sfsB203::Tn10

Linked marker

CAG12072 = CGSC7440[5]

est. P1 cotransduction: 92% [6]
Synonyms:zgj-203::Tn10, zha-203::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:G7656

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12795

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004206

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:947694

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2647

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010462

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

ObgE

Synonyms

GTPase involved in cell partioning and DNA repair[1], B3183[2][1], YhbZ[2][1], CgtA[2][1], ObgE[2][1], Obg[2][1] , cgtA, ECK3172, JW3150, obg, yhbZ, b3183

Product description

GTPase involved in DNA replication and ribosome assembly[2][3]

DNA-binding GTPase involved in cell partioning and DNA repair; involved in ribosome assembly; GTP-bound form associates with 50S ribosomal subunits[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0003677

DNA binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0238

F

Seeded from EcoCyc (v14.0)

complete

GO:0003723

RNA binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0694

F

Seeded from EcoCyc (v14.0)

complete

GO:0003924

GTPase activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01454

F

Seeded from EcoCyc (v14.0)

complete

GO:0005525

GTP binding

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01454

F

Seeded from EcoCyc (v14.0)

complete

GO:0005525

GTP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002917

F

Seeded from EcoCyc (v14.0)

complete

GO:0005525

GTP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005225

F

Seeded from EcoCyc (v14.0)

complete

GO:0005525

GTP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006073

F

Seeded from EcoCyc (v14.0)

complete

GO:0005525

GTP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006074

F

Seeded from EcoCyc (v14.0)

complete

GO:0005525

GTP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006169

F

Seeded from EcoCyc (v14.0)

complete

GO:0005525

GTP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0342

F

Seeded from EcoCyc (v14.0)

complete

GO:0019843

rRNA binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0699

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

fbaB

PMID:15690043

Experiment(s):EBI-881925

Protein

rluD

PMID:15690043

Experiment(s):EBI-881925

Protein

ydiH

PMID:15690043

Experiment(s):EBI-889421

Protein

pepE

PMID:15690043

Experiment(s):EBI-889421

Protein

prlC

PMID:15690043

Experiment(s):EBI-889421

Protein

rplL

PMID:15690043

Experiment(s):EBI-889421

Protein

rpoA

PMID:15690043

Experiment(s):EBI-889421

Protein

rpsE

PMID:16606699

Experiment(s):EBI-1145063

Protein

btuE

PMID:16606699

Experiment(s):EBI-1145063

Protein

yaeQ

PMID:16606699

Experiment(s):EBI-1145063

Protein

yhbT

PMID:16606699

Experiment(s):EBI-1145063

Protein

rpsC

PMID:16606699

Experiment(s):EBI-1145063

Protein

sufE

PMID:16606699

Experiment(s):EBI-1145063

Protein

yihI

PMID:16606699

Experiment(s):EBI-1145063

Protein

ygiT

PMID:16606699

Experiment(s):EBI-1145063

Protein

rplQ

PMID:16606699

Experiment(s):EBI-1145063

Protein

rplB

PMID:16606699

Experiment(s):EBI-1145063

Protein

gloA

PMID:16606699

Experiment(s):EBI-1145063

Protein

rplO

PMID:16606699

Experiment(s):EBI-1145063

Protein

hns

PMID:16606699

Experiment(s):EBI-1145063

Protein

rplE

PMID:16606699

Experiment(s):EBI-1145063

Protein

rpsI

PMID:16606699

Experiment(s):EBI-1145063

Protein

yhbH

PMID:16606699

Experiment(s):EBI-1145063

Protein

rpsD

PMID:16606699

Experiment(s):EBI-1145063

Protein

aroD

PMID:16606699

Experiment(s):EBI-1145063

Protein

slyD

PMID:16606699

Experiment(s):EBI-1145063

Protein

fbaB

PMID:19402753

MALDI(Z-score):17.053160

Protein

ydiH

PMID:19402753

LCMS(ID Probability):99.0

Protein

rluD

PMID:19402753

MALDI(Z-score):17.053160

Protein

pepE

PMID:19402753

LCMS(ID Probability):99.0

Protein

prlC

PMID:19402753

LCMS(ID Probability):99.0

Protein

rplL

PMID:19402753

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

cytoplasm


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKFVDEASIL VVAGDGGNGC VSFRREKYIP KGGPDGGDGG DGGDVWMEAD ENLNTLIDYR
FEKSFRAERG QNGASRDCTG KRGKDVTIKV PVGTRVIDQG TGETMGDMTK HGQRLLVAKG
GWHGLGNTRF KSSVNRTPRQ KTNGTPGDKR ELLLELMLLA DVGMLGMPNA GKSTFIRAVS
AAKPKVADYP FTTLVPSLGV VRMDNEKSFV VADIPGLIEG AAEGAGLGIR FLKHLERCRV
LLHLIDIDPI DGTDPVENAR IIISELEKYS QDLATKPRWL VFNKIDLLDK VEAEEKAKAI
AEALGWEDKY YLISAASGLG VKDLCWDVMT FIIENPVVQA EEAKQPEKVE FMWDDYHRQQ
LEEIAEEDDE DWDDDWDEDD EEGVEFIYKR
Length

390

Mol. Wt

43.286 kDa

pI

4.6 (calculated)

Extinction coefficient

55,920 - 56,420 (calc based on 8 Y, 8 W, and 4 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

3..158

PF01018 GTP1/OBG

PMID:19920124

Domain

171..284

PF01926 GTPase of unknown function

PMID:19920124

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=obgE taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131073

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947694

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010462

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P42641

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7656

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12795

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947694

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004206

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2647

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

Ecoli K-12

37.007+/-0.3

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

Protein

E. coli K-12 MG1655

4571

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

522

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

1996

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

obgE

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:3329756..3329796 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b3183 (EcoliWiki Page)

NCBI GEO profiles for obgE

microarray

GenExpDB:b3183 (EcoliWiki Page)

Summary of data for obgE from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to obgE Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:G7656

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2647

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3183

EcoGene

EcoGene:EG12795

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004206

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010462

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000019599 (score: 1.000; bootstrap: 62%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000013925 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G18570 (score: 1.000; bootstrap: 95%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000019208 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00039357 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00010805 (score: 1.000; bootstrap: 95%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000018521 (score: 1.000; bootstrap: 80%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000013362 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040718-153 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040718-175 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0218031 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0032031 (score: 1.000; bootstrap: 79%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA12249-PA (score: 1.000; bootstrap: 82%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000008280 (score: 1.000; bootstrap: 92%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000325608 (score: 1.000; bootstrap: 85%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000016552 (score: 1.000; bootstrap: 54%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000020843 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:2385599 (score: 1.000; bootstrap: 98%)
  • MGI:3644703 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Oryza gramene

  • Q7EZT3 (score: 1.000; bootstrap: 94%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000023577 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000011132 (score: 1.000; bootstrap: 78%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YHR168W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAP8A31c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000168411 (score: 1.000; bootstrap: 57%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00023707001 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000004294 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Shigella flexneri

YHBZ

From SHIGELLACYC

E. coli O157

YHBZ

From ECOO157CYC

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Do-It-Yourself Web Tools

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF01926 GTPase of unknown function

Pfam (EcoliWiki Page)

PF01018 GTP1/OBG

Superfamily (EcoliWiki Page)

SUPERFAMILY:52540

Panther (EcoliWiki Page)

PTHR11702:SF3

Superfamily (EcoliWiki Page)

SUPERFAMILY:82051

EcoCyc

EcoCyc:G7656

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12795

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004206

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2647

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010462

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

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