murC:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

murC

Gene Synonym(s)

ECK0092, b0091, JW0089[1], JW0089

Product Desc.

UDP-NACMUR-ALA-LIG[2][3]

UDP-N-acetylmuramate:L-alanine ligase; L-alanine adding enzyme[4]

Product Synonyms(s)

UDP-N-acetylmuramate:L-alanine ligase[1], B0091[2][1], MurC[2][1] , ECK0092, JW0089, b0091

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): mraZW-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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PDB: 1CC9 (model): Nosal, F., Legrand, R., Rowlands, D.A., Ferrari, P., Schoot, B., Van Heijenoort, J., unpublished[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

murC

Mnemonic

Murein

Synonyms

ECK0092, b0091, JW0089[1], JW0089

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

2.17 minutes 

MG1655: 100765..102240
<gbrowseImage> name=NC_000913:100765..102240 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 103569..105044
<gbrowseImage> name=NC_012967:103569..105044 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 100764..102239
<gbrowseImage> name=NC_012759:100764..102239 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 100765..102240
<gbrowseImage> name=NC_007779:100765..102240 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 74869..76344
<gbrowseImage> name=NC_010473:74869..76344 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

100765

Edman degradation

PMID:7601127


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

murCG344D

G344D

In murC3

seeded from UniProt:P17952

murC3(ts)

temperature sensitive

CGSC:9840


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Notes

Genetic Interactions

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<protect>

Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW0089

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCAATACACAACAATTGGCAAA

Primer 2:CCGTCATGTTGTTCTTCCTCCGG

6F3

Kohara Phage

Genobase

PMID:3038334

15B8

Kohara Phage

Genobase

PMID:3038334

leuO3051::Tn10

Linked marker

CAG12095 = CGSC7324[5]

est. P1 cotransduction: 54% [6]
Synonyms:zab-3051::Tn10 nnnThe start of leuO was reannotated by Riley et al. (2006).

zad-220::Tn10

Linked marker

CAG12025 = CGSC7326[5]

est. P1 cotransduction: 11% [6]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10619

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10619

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000612

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:946153

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0614

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000324

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

MurC

Synonyms

UDP-N-acetylmuramate:L-alanine ligase[1], B0091[2][1], MurC[2][1] , ECK0092, JW0089, b0091

Product description

UDP-NACMUR-ALA-LIG[2][3]

UDP-N-acetylmuramate:L-alanine ligase; L-alanine adding enzyme[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0008763

UDP-N-acetylmuramate-L-alanine ligase activity

PMID:7601127

IDA: Inferred from Direct Assay

F

complete

GO:0000166

nucleotide binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc (v14.0)

complete

GO:0005515

protein binding

PMID:17139082

IPI: Inferred from Physical Interaction

F

Seeded from EcoCyc (v14.0)

Missing: with/from

GO:0005515

protein binding

PMID:17139082

IPI: Inferred from Physical Interaction

EcoliWiki:murC

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00046

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000713

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004101

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005758

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013221

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0067

F

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00046

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005758

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc (v14.0)

complete

GO:0005515

protein binding

PMID:17139082

IPI: Inferred from Physical Interaction

EcoliWiki:murC


F

MurC is homodimeric (Figure 1).

complete

GO:0005737

cytoplasm

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0086

C

Seeded from EcoCyc (v14.0)

complete

GO:0000287

magnesium ion binding

PMID:17139082

IDA: Inferred from Direct Assay

F

complete

GO:0007047

cellular cell wall organization

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0961

P

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

PMID:17139082

IDA: Inferred from Direct Assay

F

complete

GO:0007049

cell cycle

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0131

P

Seeded from EcoCyc (v14.0)

complete

GO:0008152

metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016040

P

Seeded from EcoCyc (v14.0)

complete

GO:0008360

regulation of cell shape

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005758

P

Seeded from EcoCyc (v14.0)

complete

GO:0008360

regulation of cell shape

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0133

P

Seeded from EcoCyc (v14.0)

complete

GO:0008763

UDP-N-acetylmuramate-L-alanine ligase activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00046

F

Seeded from EcoCyc (v14.0)

complete

GO:0008763

UDP-N-acetylmuramate-L-alanine ligase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005758

F

Seeded from EcoCyc (v14.0)

complete

GO:0008763

UDP-N-acetylmuramate-L-alanine ligase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:6.3.2.8

F

Seeded from EcoCyc (v14.0)

complete

GO:0009058

biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000713

P

Seeded from EcoCyc (v14.0)

complete

GO:0009058

biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004101

P

Seeded from EcoCyc (v14.0)

complete

GO:0009058

biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013221

P

Seeded from EcoCyc (v14.0)

complete

GO:0009252

peptidoglycan biosynthetic process

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00046

P

Seeded from EcoCyc (v14.0)

complete

GO:0009252

peptidoglycan biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005758

P

Seeded from EcoCyc (v14.0)

complete

GO:0009252

peptidoglycan biosynthetic process

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0573

P

Seeded from EcoCyc (v14.0)

complete

GO:0051301

cell division

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005758

P

Seeded from EcoCyc (v14.0)

complete

GO:0051301

cell division

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0132

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

dnaK

PMID:15690043

Experiment(s):EBI-888916

Protein

murB

PMID:15690043

Experiment(s):EBI-888916

Protein

tufA

PMID:15690043

Experiment(s):EBI-888916, EBI-894052

Protein

clcB

PMID:15690043

Experiment(s):EBI-894052

Protein

lipA

PMID:15690043

Experiment(s):EBI-894052

Protein

nusG

PMID:15690043

Experiment(s):EBI-894052

Protein

rplL

PMID:15690043

Experiment(s):EBI-894052

Protein

rpsB

PMID:15690043

Experiment(s):EBI-894052

Protein

yfcC

PMID:15690043

Experiment(s):EBI-894052

Protein

yiaH

PMID:15690043

Experiment(s):EBI-894052

Protein

ytfT

PMID:15690043

Experiment(s):EBI-894052

Protein

rplI

PMID:19402753

LCMS(ID Probability):99.6

Protein

yfiD

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplJ

PMID:19402753

LCMS(ID Probability):99.6

Protein

fimA

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsN

PMID:19402753

LCMS(ID Probability):99.6

Protein

acpP

PMID:19402753

LCMS(ID Probability):99.6

Protein

tufB

PMID:19402753

MALDI(Z-score):22.364028

Protein

rpsJ

PMID:19402753

LCMS(ID Probability):99.6

Protein

groS

PMID:19402753

MALDI(Z-score):27.729343

Protein

lipA

PMID:19402753

LCMS(ID Probability):99.0

Protein

murB

PMID:19402753

MALDI(Z-score):17.053160

Protein

yfcC

PMID:19402753

LCMS(ID Probability):99.0

Protein

wecH

PMID:19402753

LCMS(ID Probability):99.0

Protein

ytfT

PMID:19402753

LCMS(ID Probability):99.0

Protein

clcB

PMID:19402753

LCMS(ID Probability):99.0

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MNTQQLAKLR SIVPEMRRVR HIHFVGIGGA GMGGIAEVLA NEGYQISGSD LAPNPVTQQL
MNLGATIYFN HRPENVRDAS VVVVSSAISA DNPEIVAAHE ARIPVIRRAE MLAELMRFRH
GIAIAGTHGK TTTTAMVSSI YAEAGLDPTF VNGGLVKAAG VHARLGHGRY LIAEADESDA
SFLHLQPMVA IVTNIEADHM DTYQGDFENL KQTFINFLHN LPFYGRAVMC VDDPVIRELL
PRVGRQTTTY GFSEDADVRV EDYQQIGPQG HFTLLRQDKE PMRVTLNAPG RHNALNAAAA
VAVATEEGID DEAILRALES FQGTGRRFDF LGEFPLEPVN GKSGTAMLVD DYGHHPTEVD
ATIKAARAGW PDKNLVMLFQ PHRFTRTRDL YDDFANVLTQ VDTLLMLEVY PAGEAPIPGA
DSRSLCRTIR GRGKIDPILV PDPARVAEML APVLTGNDLI LVQGAGNIGK IARSLAEIKL
KPQTPEEEQH D
Length

491

Mol. Wt

53.625 kDa

pI

5.7 (calculated)

Extinction coefficient

21,890 - 22,140 (calc based on 11 Y, 1 W, and 2 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

21..120

PF01225 Mur ligase family, catalytic domain

PMID:19920124

Domain

324..420

PF02875 Mur ligase family, glutamate ligase domain

PMID:19920124

Domain

124..304

PF08245 Mur ligase middle domain

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=murC taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128084

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946153

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000324

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P17952

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10619

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10619

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946153

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000612

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0614

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

2.60E+02

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

E. coli K-12 MG1655

1242

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

377

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

899

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

mraZW-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ

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Figure courtesy of RegulonDB

</protect>

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:100745..100785 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b0091 (EcoliWiki Page)

NCBI GEO profiles for murC

microarray

GenExpDB:b0091 (EcoliWiki Page)

Summary of data for murC from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (100622..100843) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ18; Well:E4[7]

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Notes

Accessions Related to murC Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10619

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0614

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0091

EcoGene

EcoGene:EG10619

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000612

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000324

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Macaca mulatta

  • ENSMMUP00000017869 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000038499 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

MURC

From SHIGELLACYC

E. coli O157

MURC

From ECOO157CYC

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Do-It-Yourself Web Tools

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF02875 Mur ligase family, glutamate ligase domain

Pfam (EcoliWiki Page)

PF01225 Mur ligase family, catalytic domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:51984

Superfamily (EcoliWiki Page)

SUPERFAMILY:53244

Panther (EcoliWiki Page)

PTHR23135:SF5

Superfamily (EcoliWiki Page)

SUPERFAMILY:53623

Pfam (EcoliWiki Page)

PF08245 Mur ligase middle domain

EcoCyc

EcoCyc:EG10619

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10619

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000612

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0614

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000324

Escherichia coli str. K-12 substr. MG1655

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  7. ↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

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