metN:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

metN

Gene Synonym(s)

ECK0199, b0199, JW0195, abc, metD, f343[1][2]

Product Desc.

MetN[2][3];

Component of L- and D-methionine uptake ABC permease[2][3]

L,D-methionine transporter, ATP-binding protein; methionine sulfoximine sensitivity[4]

Product Synonyms(s)

DL-methionine transporter subunit[1], ATP-binding component of ABC superfamily[1], B0199[2][1], MetD[2][1], MetN[2][1], Abc[2][1] , abc, ECK0199, JW0195, metD, b0199

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): metNIQ[2], abc

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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ABC family. Upregulated by GSNO in defined medium (aerobic).[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

metN

Mnemonic

Methionine

Synonyms

ECK0199, b0199, JW0195, abc, metD, f343[1][2]

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

4.78 minutes 

MG1655: 222645..221614
<gbrowseImage> name=NC_000913:221614..222645 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 225485..224454
<gbrowseImage> name=NC_012967:224454..225485 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 221613..222644
<gbrowseImage> name=NC_012759:221613..222644 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 222645..221614
<gbrowseImage> name=NC_007779:221614..222645 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 196749..195718
<gbrowseImage> name=NC_010473:195718..196749 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

metN(del) (Keio:JW0195)

deletion

deletion

PMID:16738554

Shigen

CGSC8439[5]

abc::Tn5KAN-2 (FB20040)

Insertion at nt 180 in Plus orientation

PMID:15262929

E. coli Genome Project:FB20040

does not contain pKD46

metN558::FLKP2(lacZ,kan,Plac)

PMID:12218041

CGSC:87300

metN724(del)::kan

PMID:16738554

CGSC:101842


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW0195

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCATAAAACTTTCGAATATCAC

Primer 2:CCGACATAACCCAGTACCTCTAC

10F9

Kohara Phage

Genobase

PMID:3038334

8G3

Kohara Phage

Genobase

PMID:3038334

zad-220::Tn10

Linked marker

CAG12025 = CGSC7326[5]

est. P1 cotransduction: 1% [6]

yafC502::Tn10

Linked marker

CAG18436 = CGSC7328[5]

est. P1 cotransduction: 70% [6]
Synonyms:zae-502::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG11621

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11621

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:944896

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001569

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1578

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000671

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

MetN

Synonyms

DL-methionine transporter subunit[1], ATP-binding component of ABC superfamily[1], B0199[2][1], MetD[2][1], MetN[2][1], Abc[2][1] , abc, ECK0199, JW0195, metD, b0199

Product description

MetN[2][3];

Component of L- and D-methionine uptake ABC permease[2][3]

L,D-methionine transporter, ATP-binding protein; methionine sulfoximine sensitivity[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0005524

ATP binding

PMID:18621668

IDA: Inferred from Direct Assay

F

complete

GO:0016887

ATPase activity

PMID:18621668

IDA: Inferred from Direct Assay

F

complete

GO:0048474

D-methionine transmembrane transporter activity

PMID:18621668

IDA: Inferred from Direct Assay

F

complete

GO:0000166

nucleotide binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003593

F

Seeded from EcoCyc (v14.0)

complete

GO:0000166

nucleotide binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003439

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR012692

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR017871

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0067

F

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0997

C

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003

C

Seeded from EcoCyc (v14.0)

complete

GO:0006810

transport

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0813

P

Seeded from EcoCyc (v14.0)

complete

GO:0006865

amino acid transport

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01719

P

Seeded from EcoCyc (v14.0)

complete

GO:0006865

amino acid transport

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0029

P

Seeded from EcoCyc (v14.0)

complete

GO:0009276

Gram-negative-bacterium-type cell wall

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR012692

C

Seeded from EcoCyc (v14.0)

complete

GO:0015424

amino acid-transporting ATPase activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01719

F

Seeded from EcoCyc (v14.0)

complete

GO:0015424

amino acid-transporting ATPase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR017908

F

Seeded from EcoCyc (v14.0)

complete

GO:0015821

methionine transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR017908

P

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0472

C

Seeded from EcoCyc (v14.0)

complete

GO:0016787

hydrolase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0378

F

Seeded from EcoCyc (v14.0)

complete

GO:0016887

ATPase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003439

F

Seeded from EcoCyc (v14.0)

complete

GO:0016887

ATPase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR017871

F

Seeded from EcoCyc (v14.0)

complete

GO:0017111

nucleoside-triphosphatase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003593

F

Seeded from EcoCyc (v14.0)

complete

GO:0019898

extrinsic to membrane

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-9903

C

Seeded from EcoCyc (v14.0)

complete

GO:0048473

D-methionine transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR012692

P

Seeded from EcoCyc (v14.0)

complete

GO:0048474

D-methionine transmembrane transporter activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR012692

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of L- and D-methionine uptake ABC permease

could be indirect

Protein

tufA

PMID:15690043

Experiment(s):EBI-879029

Protein

mntR

PMID:15690043

Experiment(s):EBI-882305

Protein

gyrB

PMID:15690043

Experiment(s):EBI-882305

Protein

hycG

PMID:15690043

Experiment(s):EBI-882305

Protein

ilvD

PMID:15690043

Experiment(s):EBI-882305

Protein

perR

PMID:15690043

Experiment(s):EBI-882305

Protein

wcaC

PMID:15690043

Experiment(s):EBI-882305

Protein

yfeA

PMID:15690043

Experiment(s):EBI-882305

Protein

yhjB

PMID:15690043

Experiment(s):EBI-882305

Protein

yjhC

PMID:15690043

Experiment(s):EBI-882305

Protein

dnaK

PMID:16606699

Experiment(s):EBI-1135927

Protein

yehH

PMID:16606699

Experiment(s):EBI-1135927

Protein

truA

PMID:16606699

Experiment(s):EBI-1135927

Protein

gyrB

PMID:19402753

LCMS(ID Probability):99.6

Protein

ilvD

PMID:19402753

LCMS(ID Probability):99.6

Protein

yfeA

PMID:19402753

LCMS(ID Probability):99.6

Protein

hycG

PMID:19402753

LCMS(ID Probability):99.6

Protein

mntR

PMID:19402753

LCMS(ID Probability):99.6

Protein

wcaC

PMID:19402753

LCMS(ID Probability):99.6

Protein

perR

PMID:19402753

LCMS(ID Probability):99.6

Protein

yjhC

PMID:19402753

LCMS(ID Probability):99.6

Protein

yhjB

PMID:19402753

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

cytoplasm

From EcoCyc[3]


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MIKLSNITKV FHQGTRTIQA LNNVSLHVPA GQIYGVIGAS GAGKSTLIRC VNLLERPTEG
SVLVDGQELT TLSESELTKA RRQIGMIFQH FNLLSSRTVF GNVALPLELD NTPKDEVKRR
VTELLSLVGL GDKHDSYPSN LSGGQKQRVA IARALASNPK VLLCDEATSA LDPATTRSIL
ELLKDINRRL GLTILLITHE MDVVKRICDC VAVISNGELI EQDTVSEVFS HPKTPLAQKF
IQSTLHLDIP EDYQERLQAE PFTDCVPMLR LEFTGQSVDA PLLSETARRF NVNNNIISAQ
MDYAGGVKFG IMLTEMHGTQ QDTQAAIAWL QEHHVKVEVL GYV
Length

343

Mol. Wt

37.788 kDa

pI

6.4 (calculated)

Extinction coefficient

12,950 - 13,575 (calc based on 5 Y, 1 W, and 5 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

45..169

PF00005 ABC transporter

PMID:19920124

Domain

266..340

PF09383 NIL domain

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=metN taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128192

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:944896

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000671

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P30750

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11621

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11621

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:944896

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001569

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1578

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MG1655

2315

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

754

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

13027

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

metNIQ

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:222625..222665 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b0199 (EcoliWiki Page)

NCBI GEO profiles for metN

microarray

GenExpDB:b0199 (EcoliWiki Page)

Summary of data for metN from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to metN Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG11621

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1578

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0199

EcoGene

EcoGene:EG11621

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001569

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000671

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT1G67940 (score: 1.000; bootstrap: 89%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0031362 (score: 1.000; bootstrap: 69%)
  • FBgn0032167 (score: 0.229)
  • FBgn0025683 (score: 0.225)
  • FBgn0020762 (score: 0.211)
  • FBgn0031516 (score: 0.208)
  • FBgn0031220 (score: 0.184)
  • FBgn0052091 (score: 0.175)
  • FBgn0031449 (score: 0.159)
  • FBgn0031515 (score: 0.153)
  • FBgn0003996 (score: 0.077)
  • FBgn0003515 (score: 0.074)
  • FBgn0020445 (score: 0.059)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA14594-PA (score: 1.000; bootstrap: 57%)
  • GA16356-PA (score: 0.236)
  • GA15545-PA (score: 0.235)
  • GA19180-PA (score: 0.225)
  • GA18458-PA (score: 0.185)
  • GA16671-PA (score: 0.176)
  • GA16397-PA (score: 0.154)
  • GA15454-PA (score: 0.057)

From Inparanoid:20070104

Oryza gramene

  • Q5Z8H2 (score: 1.000; bootstrap: 87%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000130824 (score: 1.000; bootstrap: 57%)
  • NEWSINFRUP00000130826 (score: 0.180)
  • NEWSINFRUP00000167567 (score: 0.137)
  • NEWSINFRUP00000182359 (score: 0.125)
  • NEWSINFRUP00000177047 (score: 0.125)
  • NEWSINFRUP00000168237 (score: 0.097)
  • NEWSINFRUP00000171182 (score: 0.092)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00014344001 (score: 1.000; bootstrap: 57%)
  • GSTENP00014343001 (score: 0.105)
  • GSTENP00020877001 (score: 0.101)
  • GSTENP00038511001 (score: 0.091)
  • GSTENP00014937001 (score: 0.051)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000025755 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Shigella flexneri

ABC

From SHIGELLACYC

E. coli O157

ABC

From ECOO157CYC

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Do-It-Yourself Web Tools

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00005 ABC transporter

Superfamily (EcoliWiki Page)

SUPERFAMILY:52540

Panther (EcoliWiki Page)

PTHR24220:SF34

Pfam (EcoliWiki Page)

PF09383 NIL domain

EcoCyc

EcoCyc:EG11621

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11621

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001569

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1578

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000671

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 2.13 2.14 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

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