insN-2:Gene

From EcoliWiki
Jump to: navigation, search

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

<protect>

Nomenclature

[back to top]


See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

insN-2

Mnemonic
Synonyms

insN, ECK0257, b0255, JW5024, yi91a, b4283, JW5771, yi91, yi91b, insN-1[1][2][3], insO, ORFAB, b4587

</protect>

Notes

Location(s) and DNA Sequence

[back to top]


<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

5.81 minutes 

MG1655: 269466..269870
<gbrowseImage> name=NC_000913:269466..269870 source=MG1655 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 269466..269870
<gbrowseImage> name=NC_007779:269466..269870 source=W3110 preset=GeneLocation </gbrowseImage>

MG1655

97.1 minutes 

MG1655: 4505220..4505486
<gbrowseImage> name=NC_000913:4505220..4505486 source=ecoli preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 4511877..4512143
<gbrowseImage> name=NC_007779:4511877..4512143 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 4607028..4607294
<gbrowseImage> name=NC_010473:4607028..4607294 source=DH10B preset=GeneLocation </gbrowseImage>

</protect>

Notes

Sequence Features

[back to top]


See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

269502

Edman degradation

PMID:1660923[4]


<protect></protect>

Notes

Alleles and Phenotypes

[back to top]


See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

<protect></protect>

Notes

Genetic Interactions

[back to top]


<protect>

Interactor Interaction Allele Score(s) Reference(s) Accessions Notes

</protect>

Notes

Genetic Resources

[back to top]


See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691[5]

Status:

Primer 1:

Primer 2:

8G4

Kohara Phage

Genobase

PMID:3038334[6]

5A5

Kohara Phage

Genobase

PMID:3038334[6]

16H7S

Kohara Phage

Genobase

PMID:3038334[6]

7G7

Kohara Phage

Genobase

PMID:3038334[6]

zjf-920::Tn10

Linked marker

CAG12019 = CGSC7484[7]

est. P1 cotransduction: 4% [8]
Synonyms:zjh-901::Tn10, zjg-920::Tn10

mdoB202::Tn10

Linked marker

CAG18430 = CGSC7488[7]

est. P1 cotransduction: % [8]
Synonyms:zjj-202::Tn10, zji-202::Tn10

<protect></protect>

Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoGene (EcoliWiki Page)

EcoGene:EG40014

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:5061501

Escherichia coli str. K-12 substr. MG1655

<protect></protect>

Notes

Links

[back to top]



<protect>

References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. Polard, P et al. (1991) Programmed translational frameshifting and initiation at an AUU codon in gene expression of bacterial insertion sequence IS911. J. Mol. Biol. 222 465-77 PubMed
  5. Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  6. 6.0 6.1 6.2 6.3 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
  7. 7.0 7.1 CGSC: The Coli Genetics Stock Center
  8. 8.0 8.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories