htpG:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

htpG

Gene Synonym(s)

ECK0467, b0473, JW0462[1], JW0462

Product Desc.

HtpG[2][3];

Component of molecular chaperone, HSP90 family[3]

Heat shock chaperone, HSP90 family; has ATPase activity; binds RpoH; rpoH regulon; dimeric[4]

Product Synonyms(s)

molecular chaperone HSP90 family[1], B0473[2][1], HtpG[2][1], C62.5[2][1], Hsp90[2][1] , ECK0467, JW0462, b0473

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): htpG[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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HtpG undergoes substantial nucleotide-dependent conformational rearrangements (Huai, 2005; Shiau, 2006). HtpG can form heterodimers with human HSP90alpha. In vitro, HtpG transitions to oligomeric form at 65C, required for substrate solubilization. Binds TrxA (Kumar, 2004).[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

htpG

Mnemonic

High-temperature production

Synonyms

ECK0467, b0473, JW0462[1], JW0462

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

10.65 minutes 

MG1655: 494344..496218
<gbrowseImage> name=NC_000913:494344..496218 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 467187..469061
<gbrowseImage> name=NC_012967:467187..469061 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 397103..398977
<gbrowseImage> name=NC_012759:397103..398977 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 494344..496218
<gbrowseImage> name=NC_007779:494344..496218 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 433675..435549
<gbrowseImage> name=NC_010473:433675..435549 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

494344

Edman degradation

PMID:9298646


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

htpG(del) (Keio:JW0462)

deletion

deletion

PMID:16738554

Shigen

CGSC8616[5]

htpG757(del)::kan

PMID:16738554

CGSC:101430


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW0462

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCAAAGGACAAGAAACTCGTGG

Primer 2:CCGGAAACCAGCAGCTGGTTCAT

12H5

Kohara Phage

Genobase

PMID:3038334

4B10

Kohara Phage

Genobase

PMID:3038334

zaj-3054::Tn10

Linked marker

CAG12017 = CGSC7339[5]

est. P1 cotransduction: 24% [6]
Synonyms:zba-3054::Tn10

gsk-3055::Tn10

Linked marker

CAG12154 = CGSC7341[5]

est. P1 cotransduction: 80% [6]
Synonyms:zbb-30-55::TnlO, zba-3055::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10461

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10461

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000454

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:945099

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0456

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001642

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

HtpG

Synonyms

molecular chaperone HSP90 family[1], B0473[2][1], HtpG[2][1], C62.5[2][1], Hsp90[2][1] , ECK0467, JW0462, b0473

Product description

HtpG[2][3];

Component of molecular chaperone, HSP90 family[3]

Heat shock chaperone, HSP90 family; has ATPase activity; binds RpoH; rpoH regulon; dimeric[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0000166

nucleotide binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00505

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001404

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003594

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR019805

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0067

F

Seeded from EcoCyc (v14.0)

complete

GO:0005829

cytosol

PMID:16858726

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0997

C

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003

C

Seeded from EcoCyc (v14.0)

complete

GO:0006457

protein folding

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00505

P

Seeded from EcoCyc (v14.0)

complete

GO:0006457

protein folding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001404

P

Seeded from EcoCyc (v14.0)

complete

GO:0006457

protein folding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR019805

P

Seeded from EcoCyc (v14.0)

complete

GO:0006950

response to stress

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001404

P

Seeded from EcoCyc (v14.0)

complete

GO:0006950

response to stress

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR019805

P

Seeded from EcoCyc (v14.0)

complete

GO:0006950

response to stress

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0346

P

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0472

C

Seeded from EcoCyc (v14.0)

complete

GO:0019898

extrinsic to membrane

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-9903

C

Seeded from EcoCyc (v14.0)

complete

GO:0009408

response to heat

PMID:8349564

IEP: Inferred from Expression Pattern

P

complete

GO:0051082

unfolded protein binding

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00505

F

Seeded from EcoCyc (v14.0)

complete

GO:0051082

unfolded protein binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001404

F

Seeded from EcoCyc (v14.0)

complete

GO:0051082

unfolded protein binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR019805

F

Seeded from EcoCyc (v14.0)

complete

GO:0006974

response to DNA damage stimulus

PMID:11967071

IEP: Inferred from Expression Pattern

P

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of molecular chaperone, HSP90 family

could be indirect

Protein

rpoC

PMID:15690043

Experiment(s):EBI-889372

Protein

hyfG

PMID:15690043

Experiment(s):EBI-894374

Protein

mcrB

PMID:15690043

Experiment(s):EBI-894374

Protein

pepB

PMID:15690043

Experiment(s):EBI-894374

Protein

rplB

PMID:15690043

Experiment(s):EBI-894374

Protein

rpmC

PMID:15690043

Experiment(s):EBI-894374

Protein

rpmG

PMID:15690043

Experiment(s):EBI-894374

Protein

rpsF

PMID:15690043

Experiment(s):EBI-894374

Protein

rpsG

PMID:15690043

Experiment(s):EBI-894374

Protein

ugpB

PMID:15690043

Experiment(s):EBI-894374

Protein

ycbW

PMID:15690043

Experiment(s):EBI-894374

Protein

yeaI

PMID:15690043

Experiment(s):EBI-894374

Protein

yggR

PMID:15690043

Experiment(s):EBI-894374

Protein

hemF

PMID:16606699

Experiment(s):EBI-1136800

Protein

ugpB

PMID:19402753

LCMS(ID Probability):99.0

Protein

hyfG

PMID:19402753

LCMS(ID Probability):99.0

Protein

mcrB

PMID:19402753

LCMS(ID Probability):99.0

Protein

yggR

PMID:19402753

LCMS(ID Probability):99.0

Protein

ycbW

PMID:19402753

LCMS(ID Probability):99.0

Protein

yeaI

PMID:19402753

LCMS(ID Probability):99.0

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKGQETRGFQ SEVKQLLHLM IHSLYSNKEI FLRELISNAS DAADKLRFRA LSNPDLYEGD
GELRVRVSFD KDKRTLTISD NGVGMTRDEV IDHLGTIAKS GTKSFLESLG SDQAKDSQLI
GQFGVGFYSA FIVADKVTVR TRAAGEKPEN GVFWESAGEG EYTVADITKE DRGTEITLHL
REGEDEFLDD WRVRSIISKY SDHIALPVEI EKREEKDGET VISWEKINKA QALWTRNKSE
ITDEEYKEFY KHIAHDFNDP LTWSHNRVEG KQEYTSLLYI PSQAPWDMWN RDHKHGLKLY
VQRVFIMDDA EQFMPNYLRF VRGLIDSSDL PLNVSREILQ DSTVTRNLRN ALTKRVLQML
EKLAKDDAEK YQTFWQQFGL VLKEGPAEDF ANQEAIAKLL RFASTHTDSS AQTVSLEDYV
SRMKEGQEKI YYITADSYAA AKSSPHLELL RKKGIEVLLL SDRIDEWMMN YLTEFDGKPF
QSVSKVDESL EKLADEVDES AKEAEKALTP FIDRVKALLG ERVKDVRLTH RLTDTPAIVS
TDADEMSTQM AKLFAAAGQK VPEVKYIFEL NPDHVLVKRA ADTEDEAKFS EWVELLLDQA
LLAERGTLED PNLFIRRMNQ LLVS
Length

624

Mol. Wt

71.424 kDa

pI

5.0 (calculated)

Extinction coefficient

81,820 (calc based on 18 Y, 10 W, and 0 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Modification Site

409

phosphorylation site at S409

probability less than 75%

PMID:17938405

Modification Site

410

phosphorylation site at S410

probability less than 75%

PMID:17938405

Modification Site

405

phosphorylation site at T405

probability less than 75%

PMID:17938405

Modification Site

104

phosphorylation site at S104

probability greater than 75%

PMID:17938405

Modification Site

404

phosphorylation site at S404

probability less than 75%

PMID:17938405

Domain

27..183

PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

PMID:19920124

Domain

209..624

PF00183 Hsp90 protein

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=htpG taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128457

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945099

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001642

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A6Z3

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10461

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10461

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945099

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000454

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0456

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

2.07E+03

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

E. coli K-12 MG1655

12381

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

2421

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

11412

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

htpG

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:494324..494364 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b0473 (EcoliWiki Page)

NCBI GEO profiles for htpG

microarray

GenExpDB:b0473 (EcoliWiki Page)

Summary of data for htpG from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (494163..494389) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ20; Well:B9[7]

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Notes

Accessions Related to htpG Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10461

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0456

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0473

EcoGene

EcoGene:EG10461

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000454

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001642

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000021793 (score: 1.000; bootstrap: 95%)
  • ENSANGP00000015826 (score: 0.190)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000016269 (score: 1.000; bootstrap: 97%)
  • ENSAPMP00000001498 (score: 0.790)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G52640 (score: 1.000; bootstrap: 100%)
  • AT5G56030 (score: 0.829)
  • AT5G56010 (score: 0.828)
  • AT5G56000 (score: 0.819)
  • AT4G24190 (score: 0.264)
  • AT2G04030 (score: 0.169)
  • AT3G07770 (score: 0.161)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000008225 (score: 1.000; bootstrap: 93%)
  • ENSBTAP00000001034 (score: 0.553)
  • ENSBTAP00000020264 (score: 0.371)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00027205 (score: 1.000; bootstrap: 96%)
  • WBGene00028360 (score: 0.173)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00000915 (score: 1.000; bootstrap: 97%)
  • WBGene00011480 (score: 0.161)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000006693 (score: 1.000; bootstrap: 92%)
  • ENSCAFP00000000259 (score: 0.651)
  • ENSCAFP00000026652 (score: 0.377)
  • ENSCAFP00000011044 (score: 0.154)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000015086 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Danio rerio

  • ZDB-CDNA-040718-542 (score: 1.000; bootstrap: 100%)
  • ZDB-GENE-990415-94 (score: 0.978)
  • ZDB-CDNA-040425-390 (score: 0.784)
  • ZDB-GENE-990415-95 (score: 0.778)
  • ZDB-CDNA-040425-937 (score: 0.194)
  • ZDB-GENE-031002-1 (score: 0.194)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0191163 (score: 1.000; bootstrap: 96%)
  • DDB0215015 (score: 0.152)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0001233 (score: 1.000; bootstrap: 87%)
  • FBgn0039562 (score: 0.185)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA11622-PA (score: 1.000; bootstrap: 83%)
  • GA18946-PA (score: 0.184)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000016523 (score: 1.000; bootstrap: 85%)
  • ENSGALP00000018498 (score: 0.353)
  • ENSGALP00000020744 (score: 0.219)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000216281 (score: 1.000; bootstrap: 90%)
  • ENSP00000329390 (score: 0.786)
  • ENSP00000299767 (score: 0.191)
  • ENSP00000319956 (score: 0.142)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000029862 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000016126 (score: 0.544)
  • ENSMMUP00000014500 (score: 0.489)
  • ENSMMUP00000025472 (score: 0.229)
  • ENSMMUP00000030897 (score: 0.208)
  • ENSMMUP00000010774 (score: 0.158)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000016639 (score: 1.000; bootstrap: 95%)
  • ENSMODP00000000135 (score: 0.839)
  • ENSMODP00000014747 (score: 0.397)
  • ENSMODP00000002721 (score: 0.159)

From Inparanoid:20070104

Mus musculus

  • MGI:96250 (score: 1.000; bootstrap: 89%)
  • MGI:96247 (score: 0.806)
  • MGI:98817 (score: 0.190)

From Inparanoid:20070104

Oryza gramene

  • Q08277 (score: 1.000; bootstrap: 100%)
  • Q7XR98 (score: 0.824)
  • Q6ZK13 (score: 0.795)
  • P33126 (score: 0.795)
  • Q69QQ6 (score: 0.791)
  • Q69QQ3 (score: 0.791)
  • Q76B83 (score: 0.790)
  • Q9ZRG0 (score: 0.772)
  • Q7XJ80 (score: 0.767)
  • Q9XGF1 (score: 0.751)
  • Q5QLP0 (score: 0.648)
  • Q8SB39 (score: 0.242)
  • Q5Z9N8 (score: 0.242)
  • P36183 (score: 0.239)
  • Q9MB32 (score: 0.236)
  • Q6ZCV7 (score: 0.146)
  • Q43638 (score: 0.141)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000031136 (score: 1.000; bootstrap: 87%)
  • ENSPTRP00000011487 (score: 0.404)
  • ENSPTRP00000009129 (score: 0.207)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000009556 (score: 1.000; bootstrap: 85%)
  • ENSRNOP00000026920 (score: 0.811)
  • ENSRNOP00000029683 (score: 0.668)
  • ENSRNOP00000004806 (score: 0.271)
  • ENSRNOP00000029012 (score: 0.225)
  • ENSRNOP00000034846 (score: 0.190)
  • ENSRNOP00000004997 (score: 0.185)
  • ENSRNOP00000034227 (score: 0.135)
  • ENSRNOP00000010058 (score: 0.132)
  • ENSRNOP00000016604 (score: 0.097)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YMR186W (score: 1.000; bootstrap: 100%)
  • YPL240C (score: 0.962)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC9264c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000145961 (score: 1.000; bootstrap: 93%)
  • NEWSINFRUP00000175681 (score: 0.736)
  • NEWSINFRUP00000176494 (score: 0.150)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00022996001 (score: 1.000; bootstrap: 86%)
  • GSTENP00020724001 (score: 0.268)
  • GSTENP00029760001 (score: 0.183)
  • GSTENP00020722001 (score: 0.119)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000035642 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

HTPG

From SHIGELLACYC

E. coli O157

HTPG

From ECOO157CYC

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Do-It-Yourself Web Tools

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00183 Hsp90 protein

Pfam (EcoliWiki Page)

PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

Panther (EcoliWiki Page)

PTHR11528:SF38

Superfamily (EcoliWiki Page)

SUPERFAMILY:54211

Superfamily (EcoliWiki Page)

SUPERFAMILY:55874

Superfamily (EcoliWiki Page)

SUPERFAMILY:110942

EcoCyc

EcoCyc:EG10461

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10461

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000454

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0456

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001642

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  7. ↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

Categories

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