grpE:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

grpE

Gene Synonym(s)

ECK2610, b2614, JW2594[1], JW2594

Product Desc.

phage lambda replication; host DNA synthesis; heat shock protein; protein repair[2][3];

Component of DnaJ/DnaK/GrpE[2][3]

Nucleotide exchange factor for the DnaKJ chaperone; heat shock protein; mutant survives lambda induction; stimulates DnaK and HscC ATPase[4]

Product Synonyms(s)

heat shock protein[1], B2614[2][1], GrpE[2][1] , ECK2610, JW2594, b2614

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): grpE[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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HT_Cmplx22_Cyt: DnaK+GrpE+GyrA+RpsA.[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

grpE

Mnemonic

Growth after phage induction

Synonyms

ECK2610, b2614, JW2594[1], JW2594

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

59.23 minutes 

MG1655: 2748730..2748137
<gbrowseImage> name=NC_000913:2748137..2748730 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2672003..2671410
<gbrowseImage> name=NC_012967:2671410..2672003 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 2633949..2634542
<gbrowseImage> name=NC_012759:2633949..2634542 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 2749364..2748771
<gbrowseImage> name=NC_007779:2748771..2749364 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 2840495..2839902
<gbrowseImage> name=NC_010473:2839902..2840495 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

grpEV108A

V108A

No effect in ability to interact with dnaK

seeded from UniProt:P09372

grpEG122D

G122D

Temperature-sensitive phenotype

seeded from UniProt:P09372

grpEL149A

L149A

No effect in ability to interact with dnaK

seeded from UniProt:P09372

grpEQ155A

Q155A

No effect in ability to interact with dnaK

seeded from UniProt:P09372

grpEI157A

I157A

No effect in ability to interact with dnaK

seeded from UniProt:P09372

grpEM159A

M159A

No effect in ability to interact with dnaK

seeded from UniProt:P09372

grpEM174A

M174A

No effect in ability to interact with dnaK

seeded from UniProt:P09372

grpER183A

R183A

Loss of ability to interact with dnaK

seeded from UniProt:P09372

grpER186A

R186A

No effect in ability to interact with dnaK

seeded from UniProt:P09372

grpEM189A

M189A

No effect in ability to interact with dnaK

seeded from UniProt:P09372

grpEV192A

V192A

Loss of ability to interact with dnaK

seeded from UniProt:P09372

grpER74A

R74A

Great decrease in ability to interact with dnaK

seeded from UniProt:P09372

grpEP151A

P151A

No effect in ability to interact with dnaK

seeded from UniProt:P09372

grpER73A

R73A

Great decrease in ability to interact with dnaK

seeded from UniProt:P09372

grpEK82A

K82A

Great decrease in ability to interact with dnaK

seeded from UniProt:P09372

grpEF86A

F86A

No effect in ability to interact with dnaK

seeded from UniProt:P09372

grpER104A

R104A

No effect in ability to interact with dnaK

seeded from UniProt:P09372

grpEE107A

E107A

No effect in ability to interact with dnaK

seeded from UniProt:P09372

grpE280

PMID:2424889

CGSC:90840


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW2594

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCAGTAGTAAAGAACAGAAAAC

Primer 2:CCAGCTTTTGCTTTCGCTACAG

E8F2

Kohara Phage

Genobase

PMID:3038334

22D7

Kohara Phage

Genobase

PMID:3038334

pheA18::Tn10

Linked marker

CAG12158 = CGSC7421[5]

est. P1 cotransduction: 69% [6]

srlD3131::Tn10

Linked marker

CAG18642 = CGSC7423[5]

est. P1 cotransduction: % [6]
Synonyms:zfh-3131::Tn10, zfi-3131::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10416

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10416

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000409

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:947097

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0411

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008598

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

GrpE

Synonyms

heat shock protein[1], B2614[2][1], GrpE[2][1] , ECK2610, JW2594, b2614

Product description

phage lambda replication; host DNA synthesis; heat shock protein; protein repair[2][3];

Component of DnaJ/DnaK/GrpE[2][3]

Nucleotide exchange factor for the DnaKJ chaperone; heat shock protein; mutant survives lambda induction; stimulates DnaK and HscC ATPase[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0000774

adenyl-nucleotide exchange factor activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000740

F

Seeded from EcoCyc (v14.0)

complete

GO:0005515

protein binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR009012

F

Seeded from EcoCyc (v14.0)

complete

GO:0005515

protein binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013805

F

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01151

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0086

C

Seeded from EcoCyc (v14.0)

complete

GO:0005739

mitochondrion

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000740

C

Seeded from EcoCyc (v14.0)

complete

GO:0006457

protein folding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000740

P

Seeded from EcoCyc (v14.0)

complete

GO:0006457

protein folding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR009012

P

Seeded from EcoCyc (v14.0)

complete

GO:0006950

response to stress

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0346

P

Seeded from EcoCyc (v14.0)

complete

GO:0009408

response to heat

PMID:8349564

IEP: Inferred from Expression Pattern

P

complete

GO:0030150

protein import into mitochondrial matrix

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000740

P

Seeded from EcoCyc (v14.0)

complete

GO:0042803

protein homodimerization activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000740

F

Seeded from EcoCyc (v14.0)

complete

GO:0051087

chaperone binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000740

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of DnaJ/DnaK/GrpE

could be indirect

Protein

gadA

PMID:15690043

Experiment(s):EBI-881166

Protein

metK

PMID:15690043

Experiment(s):EBI-881166

Protein

mntH

PMID:15690043

Experiment(s):EBI-888219

Protein

ccmB

PMID:15690043

Experiment(s):EBI-888219

Protein

dsdX

PMID:15690043

Experiment(s):EBI-888219

Protein

emrY

PMID:15690043

Experiment(s):EBI-888219

Protein

evgA

PMID:15690043

Experiment(s):EBI-888219

Protein

flgK

PMID:15690043

Experiment(s):EBI-888219

Protein

gadB

PMID:15690043

Experiment(s):EBI-888219

Protein

rplD

PMID:15690043

Experiment(s):EBI-888219

Protein

rplL

PMID:15690043

Experiment(s):EBI-888219

Protein

rplS

PMID:15690043

Experiment(s):EBI-888219

Protein

rpmG

PMID:15690043

Experiment(s):EBI-888219

Protein

rpsB

PMID:15690043

Experiment(s):EBI-888219

Protein

rpsG

PMID:15690043

Experiment(s):EBI-888219

Protein

sra

PMID:15690043

Experiment(s):EBI-888219

Protein

thiG

PMID:15690043

Experiment(s):EBI-888219

Protein

tufA

PMID:15690043

Experiment(s):EBI-888219

Protein

entB

PMID:15690043

Experiment(s):EBI-888219

Protein

greA

PMID:16606699

Experiment(s):EBI-1143469

Protein

paaB

PMID:16606699

Experiment(s):EBI-1143469

Protein

rplO

PMID:16606699

Experiment(s):EBI-1143469

Protein

zntR

PMID:16606699

Experiment(s):EBI-1143469

Protein

rplN

PMID:16606699

Experiment(s):EBI-1143469

Protein

phnN

PMID:16606699

Experiment(s):EBI-1143469

Protein

ubiX

PMID:16606699

Experiment(s):EBI-1143469

Protein

nusG

PMID:16606699

Experiment(s):EBI-1143469

Protein

clpB

PMID:16606699

Experiment(s):EBI-1143469

Protein

rplQ

PMID:16606699

Experiment(s):EBI-1143469

Protein

rplS

PMID:16606699

Experiment(s):EBI-1143469

Protein

tauB

PMID:16606699

Experiment(s):EBI-1143469

Protein

rpsE

PMID:16606699

Experiment(s):EBI-1143469

Protein

rpsI

PMID:16606699

Experiment(s):EBI-1143469

Protein

fur

PMID:16606699

Experiment(s):EBI-1143469

Protein

dnaK

PMID:16606699

Experiment(s):EBI-1143469

Protein

ykgF

PMID:16606699

Experiment(s):EBI-1143469

Protein

rho

PMID:16606699

Experiment(s):EBI-1143469

Protein

nadE

PMID:16606699

Experiment(s):EBI-1143469

Protein

torZ

PMID:16606699

Experiment(s):EBI-1143469

Protein

matC

PMID:16606699

Experiment(s):EBI-1143469

Protein

rplJ

PMID:16606699

Experiment(s):EBI-1143469

Protein

pepD

PMID:16606699

Experiment(s):EBI-1143469

Protein

lon

PMID:16606699

Experiment(s):EBI-1143469

Protein

gadB

PMID:19402753

LCMS(ID Probability):99.0 MALDI(Z-score):7.662561

Protein

thiG

PMID:19402753

LCMS(ID Probability):99.0

Protein

emrY

PMID:19402753

LCMS(ID Probability):99.0

Protein

mntH

PMID:19402753

LCMS(ID Probability):99.0

Protein

dsdX

PMID:19402753

LCMS(ID Probability):99.0

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSSKEQKTPE GQAPEEIIMD QHEEIEAVEP EASAEQVDPR DEKVANLEAQ LAEAQTRERD
GILRVKAEME NLRRRTELDI EKAHKFALEK FINELLPVID SLDRALEVAD KANPDMSAMV
EGIELTLKSM LDVVRKFGVE VIAETNVPLD PNVHQAIAMV ESDDVAPGNV LGIMQKGYTL
NGRTIRAAMV TVAKAKA
Length

197

Mol. Wt

21.797 kDa

pI

4.6 (calculated)

Extinction coefficient

1,490 (calc based on 1 Y, 0 W, and 0 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

7..194

PF01025 GrpE

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=grpE taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130533

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947097

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008598

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P09372

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10416

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10416

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947097

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000409

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0411

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

1.60E+04

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

E. coli K-12 MG1655

23174

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

4731

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

21080

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

grpE

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:2748710..2748750 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b2614 (EcoliWiki Page)

NCBI GEO profiles for grpE

microarray

GenExpDB:b2614 (EcoliWiki Page)

Summary of data for grpE from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (2748635..2748924) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ17; Well:G1[7]

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Notes

Accessions Related to grpE Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10416

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0411

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b2614

EcoGene

EcoGene:EG10416

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000409

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008598

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000022118 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000015422 (score: 0.855)
  • ENSANGP00000025924 (score: 0.217)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000003920 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT4G26780 (score: 1.000; bootstrap: 87%)
  • AT5G55200 (score: 0.494)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000013431 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000026575 (score: 0.260)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00031315 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00007927 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000021192 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000027030 (score: 0.258)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-051120-111 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-051120-47 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0216255 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0014877 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA19397-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000025020 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000034032 (score: 0.334)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000264954 (score: 1.000; bootstrap: 100%)
  • ENSP00000329558 (score: 0.284)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000022370 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000003362 (score: 0.470)
  • ENSMMUP00000028526 (score: 0.307)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000003595 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000000081 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000007152 (score: 0.296)

From Inparanoid:20070104

Mus musculus

  • MGI:1334417 (score: 1.000; bootstrap: 100%)
  • MGI:1334416 (score: 0.216)

From Inparanoid:20070104

Oryza gramene

  • Q5DPX9 (score: 1.000; bootstrap: 66%)
  • Q6Z0G0 (score: 0.706)
  • Q6EPR4 (score: 0.546)
  • Q5DPX8 (score: 0.515)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000027375 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000029729 (score: 0.284)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000008930 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000026495 (score: 0.226)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YOR232W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC3B99 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000131063 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000049520 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

GRPE

From SHIGELLACYC

E. coli O157

GRPE

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF01025 GrpE

Superfamily (EcoliWiki Page)

SUPERFAMILY:51064

Panther (EcoliWiki Page)

PTHR21237:SF2

Superfamily (EcoliWiki Page)

SUPERFAMILY:58014

EcoCyc

EcoCyc:EG10416

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10416

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000409

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0411

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008598

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  7. ↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

Categories

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