groS:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

groS

Gene Synonym(s)

ECK4136, b4142, JW4102, groES, mopA, groE, hdh, mopB, tabB [1][2], TabB

Product Desc.

GroES, chaperone binds to Hsp60 in pres. Mg-ATP, suppressing its ATPase activity[2][3];

Component of GroEL-GroES Chaperonin-CPLX[3]

Chaperonin Cpn10; GroESL small subunit GroES; phage morphogenesis[4]

Product Synonyms(s)

Cpn10 chaperonin GroES, small subunit of GroESL[1], GroE[2][1], B4142[2][1], Hdh[2][1], TabA product[2][1], GroS[2][1], GroES[2][1], MopB[2][1] , ECK4136, groES, JW4102, mopB, TabB, b4142

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): groS[2], groS, groES

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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GroS binds and regulates rpoH. Cells deficient in GroES and GroEL lyse due to inability to produce cell walls as a result of the reduced level of DapA, the first enzyme in the DAP synthesis pathway. Growth below 8C is impaired due to GroESL inactivation and can be rescued by transgenic Oleispira antarctica Cpn10/60. Overproduction of GroESL can supress tig/dnaK synthetic lethality at 30 degrees C. Binds TrxA (Kumar, 2004).[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

groS

Mnemonic

Growth of phage

Synonyms

ECK4136, b4142, JW4102, groES, mopA, groE, hdh, mopB, tabB [1][2], TabB

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

94.16 minutes, 94.16 minutes 

MG1655: 4368711..4369004
<gbrowseImage> name=NC_000913:4368711..4369004 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 4349409..4349702
<gbrowseImage> name=NC_012967:4349409..4349702 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 4307446..4307739
<gbrowseImage> name=NC_012759:4307446..4307739 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 4375368..4375661
<gbrowseImage> name=NC_007779:4375368..4375661 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 4469073..4469366
<gbrowseImage> name=NC_010473:4469073..4469366 source=DH10B preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 4458139..4458591
<gbrowseImage> name=NC_012967:4458139..4458591 source=REL606 preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

4368711

Edman degradation

PMID:8506346
PMID:8740179
PMID:9298646
PMID:9600841


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

groLS(del)::cam

Lethality, unless the strain also contains a functional copy of the groLS operon.

PMID:12189177


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW4102

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCAATATTCGTCCATTGCATGA

Primer 2:CCgGCTTCAACAATTGCCAGAAT

5G7

Kohara Phage

Genobase

PMID:3038334

9B1

Kohara Phage

Genobase

PMID:3038334

cadB2231::Tn10

Linked marker

CAG18488 = CGSC7479[5]

est. P1 cotransduction: 66% [6]
Synonyms:zjd-2231::Tn10

cycA30::Tn10

Linked marker

CAG12073 = CGSC7482[5]

est. P1 cotransduction: 5% [6]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10600

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10600

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000593

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:948655

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0595

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013566

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

GroES

Synonyms

Cpn10 chaperonin GroES, small subunit of GroESL[1], GroE[2][1], B4142[2][1], Hdh[2][1], TabA product[2][1], GroS[2][1], GroES[2][1], MopB[2][1] , ECK4136, groES, JW4102, mopB, TabB, b4142

Product description

GroES, chaperone binds to Hsp60 in pres. Mg-ATP, suppressing its ATPase activity[2][3];

Component of GroEL-GroES Chaperonin-CPLX[3]

Chaperonin Cpn10; GroESL small subunit GroES; phage morphogenesis[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0042963

phage assembly

PMID:7015340

IMP: Inferred from Mutant Phenotype

P

complete

GO:0009408

response to heat

PMID:8349564

IEP: Inferred from Expression Pattern

P

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of GroEL-GroES Chaperonin-CPLX

could be indirect

Protein

dnaK

PMID:15690043

Experiment(s):EBI-885556, EBI-892166

Protein

dnaN

PMID:15690043

Experiment(s):EBI-885556, EBI-892166

Protein

fusA

PMID:15690043

Experiment(s):EBI-885556

Protein

htpG

PMID:15690043

Experiment(s):EBI-885556

Protein

mreB

PMID:15690043

Experiment(s):EBI-885556

Protein

hldD

PMID:15690043

Experiment(s):EBI-885556, EBI-892166

Protein

tig

PMID:15690043

Experiment(s):EBI-885556, EBI-892166

Protein

minD

PMID:16606699

Experiment(s):EBI-1147540

Protein

nrdI

PMID:16606699

Experiment(s):EBI-1147540

Protein

rplO

PMID:16606699

Experiment(s):EBI-1147540

Protein

sufE

PMID:16606699

Experiment(s):EBI-1147540

Protein

rpmI

PMID:16606699

Experiment(s):EBI-1147540

Protein

nadE

PMID:16606699

Experiment(s):EBI-1147540

Protein

rpsB

PMID:15690043

Experiment(s):EBI-892166

Protein

slyD

PMID:15690043

Experiment(s):EBI-892166

Protein

ybbP

PMID:15690043

Experiment(s):EBI-892166

Protein

fepB

PMID:15690043

Experiment(s):EBI-892166

Protein

grpE

PMID:19402753

LCMS(ID Probability):99.0 MALDI(Z-score):25.437584

Protein

clpA

PMID:19402753

MALDI(Z-score):27.054664

Protein

dnaN

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):39.136060

Protein

rfaD

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):39.802389

Protein

tig

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):39.990229

Protein

lon

PMID:19402753

MALDI(Z-score):22.459071

Protein

clpB

PMID:19402753

MALDI(Z-score):28.355102

Protein

ybbP

PMID:19402753

LCMS(ID Probability):99.6

Protein

ybbN

PMID:19402753

MALDI(Z-score):36.591327

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MNIRPLHDRV IVKRKEVETK SAGGIVLTGS AAAKSTRGEV LAVGNGRILE NGEVKPLDVK
VGDIVIFNDG YGVKSEKIDN EEVLIMSESD ILAIVEA
Length

97

Mol. Wt

10.386 kDa

pI

4.9 (calculated)

Extinction coefficient

1,490 (calc based on 1 Y, 0 W, and 0 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Modification Site

71

phosphorylation site at Y71

probability greater than 75%

PMID:17938405

Domain

2..95

PF00166 Chaperonin 10 Kd subunit

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=groS taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131967

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948655

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013566

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A6F9

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10600

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10600

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948655

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000593

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0595

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

6.54E+03

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

Ecoli K-12

2150.179+/-8.338

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.34161+/-0.01362

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by FISH

PMID:20671182

mRNA

Ecoli K-12

0.561433447

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 EMG2

980

molecules/cell

  • Medium: MOPS glucose minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • Growth phase: Exponential
  • OD: OD600 = 0.2 to 0.25
  • other: aerated

Quantitative protein sequencing

Spot ID: Ml44

PMID: 9298646

Protein

E. coli K-12 MG1655

59001

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

13733

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

47531

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

groS

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:4368691..4368731 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b4142 (EcoliWiki Page)

NCBI GEO profiles for groS

microarray

GenExpDB:b4142 (EcoliWiki Page)

Summary of data for groS from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to groS Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10600

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0595

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b4142

EcoGene

EcoGene:EG10600

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000593

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013566

Escherichia coli str. K-12 substr. MG1655

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Notes

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000011747 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000025588 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G20720 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000016712 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00032786 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00021248 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000016017 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000019044 (score: 0.855)
  • ENSCAFP00000027789 (score: 0.833)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-000906-2 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040625-214 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0187651 (score: 1.000; bootstrap: 100%)
  • DDB0231250 (score: 0.166)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0036334 (score: 1.000; bootstrap: 100%)
  • FBgn0038200 (score: 0.504)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA10877-PA (score: 1.000; bootstrap: 100%)
  • GA22124-PA (score: 0.529)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000014746 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000001160 (score: 0.269)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000233893 (score: 1.000; bootstrap: 100%)
  • ENSP00000339461 (score: 0.841)
  • ENSP00000333665 (score: 0.775)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000009326 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000013748 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000030221 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000012726 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000013815 (score: 0.745)
  • ENSMMUP00000030903 (score: 0.664)
  • ENSMMUP00000010590 (score: 0.659)
  • ENSMMUP00000029564 (score: 0.401)

From Inparanoid:20070104

Mus musculus

  • MGI:104680 (score: 1.000; bootstrap: 100%)
  • MGI:3644923 (score: 0.955)
  • MGI:1935159 (score: 0.955)
  • MGI:3647053 (score: 0.722)

From Inparanoid:20070104

Oryza gramene

  • Q69K73 (score: 1.000; bootstrap: 100%)
  • Q69QD5 (score: 1.000; bootstrap: 100%)
  • Q69Y99 (score: 1.000; bootstrap: 100%)
  • Q69YA0 (score: 0.857)
  • Q6K826 (score: 0.756)
  • Q6K822 (score: 0.482)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000021827 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000003148 (score: 0.761)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000020066 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000046150 (score: 0.877)
  • ENSRNOP00000007470 (score: 0.630)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YOR020C (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPCC5506c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000143898 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00021744001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000016357 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

MOPB

From SHIGELLACYC

E. coli O157

MOPB

From ECOO157CYC

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Do-It-Yourself Web Tools

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00166 Chaperonin 10 Kd subunit

Superfamily (EcoliWiki Page)

SUPERFAMILY:50129

Panther (EcoliWiki Page)

PTHR10772:SF0

EcoCyc

EcoCyc:EG10600

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10600

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000593

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0595

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013566

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 1.14 1.15 1.16 1.17 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 2.13 2.14 2.15 2.16 2.17 2.18 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

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