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On One Page

Quickview |

Gene |

Product(s) |

Expression|

Evolution |

References |

Quickview

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Standard Name	glgP
Gene Synonym(s)	ECK3414, b3428, JW3391, glgY^[1], glgY
Product Desc.	GlgP^[2]^[3]; Component of glycogen phosphorylase^[2]^[3] Glycogen phosphorylase; alpha-glucan phosphorylase^[4]
Product Synonyms(s)	glycogen phosphorylase^[1], B3428^[2]^[1], GlgY^[2]^[1], GlgP^[2]^[1] , ECK3414, glgY, JW3391, b3428
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): glgCAP^[2], glgC, glgCAY, OP00164
Regulation/Activity
Quick Links
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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name	glgP
Mnemonic	Glycogen
Synonyms	ECK3414, b3428, JW3391, glgY^[1], glgY
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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain	Map location	Genome coordinates	Genome browsers	Sequence links
MG1655	76.78 minutes	MG1655: 3564604..3562157 <gbrowseImage> name=NC_000913:3562157..3564604 source=MG1655 preset=GeneLocation </gbrowseImage>	EcoCyc GBrowse(MG1655)	FASTA Dump EcoCyc Sequence Dump
REL606		NC_012967: 3498035..3495588 <gbrowseImage> name=NC_012967:3495588..3498035 source=REL606 preset=GeneLocation </gbrowseImage>	GBrowse (REL606)	FASTA Dump
BW2952		NC_012759: 3450651..3453098 <gbrowseImage> name=NC_012759:3450651..3453098 source=BW2952 preset=GeneLocation </gbrowseImage>	GBrowse (BW2952)	FASTA Dump
W3110		W3110: 4073834..4076281 <gbrowseImage> name=NC_007779:4073834..4076281 source=W3110 preset=GeneLocation </gbrowseImage>	GBrowse(W3110)	FASTA Dump
DH10B		DH10B: 3662349..3659902 <gbrowseImage> name=NC_010473:3659902..3662349 source=DH10B preset=GeneLocation </gbrowseImage>	GBrowse(DH10B)	FASTA Dump
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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type	Strain	Genomic Location	Evidence	Reference	Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele	Nt change(s)	AA change(s)	Reference	Availability	Comments
ΔglgP (Keio:JW3391)	deletion	deletion	PMID:16738554	Shigen CGSC10524^[5]
glgP721::Tn10	Insertion at 3,564,565 bp in MG1655 (NC_000913)		adapted from Nichols et al.^[6]	CAG18638 = CGSC7451^[5]	Synonyms: zhg-3086::Tn10, zhh-21::Tn10
glgP721::Tn10			PMID:3540312 PMID:9829956	CGSC:7380
ΔglgP761::kan			PMID:16738554	CGSC:101144
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Notes

Genetic Interactions

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Interactor	Interaction	Allele	Score(s)	Reference(s)	Accessions	Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource	Resource Type	Source	Notes/Reference
JW3391	Plasmid clone	Shigen	PMID:16769691 Status:Clone OK Primer 1:GCCAATGCTCCGTTTACATATTC Primer 2:CCtAATCTCACCGGATCGATATG
16A5	Kohara Phage	Genobase	PMID:3038334
E5B4	Kohara Phage	Genobase	PMID:3038334
E4E4	Kohara Phage	Genobase	PMID:3038334
zhf-3084::Tn10	Linked marker	CAG18456 = CGSC7576^[5]	est. P1 cotransduction: 5% ^[6] Synonyms:zhe-3084::Tn10nnnCAG18456 also carries cysG0 (CGSC).
zhg-50::Tn10	Linked marker	CAG18450 = CGSC7450^[5]	est. P1 cotransduction: 33% ^[6] Synonyms:zhf-50::Tn10, zhf-5::Tn10
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:EG10380	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10380	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000373	Escherichia coli str. K-12 substr. MG1655
NCBI (EcoliWiki Page)	GeneID:947931	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0375	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0011198	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name	GlgP
Synonyms	glycogen phosphorylase^[1], B3428^[2]^[1], GlgY^[2]^[1], GlgP^[2]^[1] , ECK3414, glgY, JW3391, b3428
Product description	GlgP^[2]^[3]; Component of glycogen phosphorylase^[2]^[3] Glycogen phosphorylase; alpha-glucan phosphorylase^[4]
EC number (for enzymes)	2.4.1.1^[1]
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0016052	carbohydrate catabolic process	PMID:4878695	IDA: Inferred from Direct Assay		P	Seeded from Riley et al 2006 ^[1].	complete
	GO:0000271	polysaccharide biosynthetic process				P	Seeded from Riley et al 2006 ^[1].	Missing: evidence, reference
	GO:0030170	pyridoxal phosphate binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR011833	F	Seeded from EcoCyc (v14.0)	complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
Protein	Subunits of glycogen phosphorylase	could be indirect
Protein	intA		PMID:19402753	LCMS(ID Probability):99.6
Protein	pykF		PMID:19402753	LCMS(ID Probability):99.6
Protein	rpmB		PMID:19402753	LCMS(ID Probability):99.6
Protein	ptsH		PMID:19402753	LCMS(ID Probability):99.6
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MNAPFTYSSP TLSVEALKHS IAYKLMFTIG KDPVVANKHE WLNATLFAVR DRLVERWLRS NRAQLSQETR QVYYLSMEFL IGRTLSNAML SLGIYEDVQG ALEAMGLNLE ELIDEENDPG LGNGGLGRLA ACFLDSLATL GLPGRGYGIR YDYGMFKQNI VNGSQKESPD YWLEYGNPWE FKRHNTRYKV RFGGRIQQEG KKTRWIETEE ILGVAYDQII PGYDTDATNT LRLWSAQASS EINLGKFNQG DYFAAVEDKN HSENVSRVLY PDDSTYSGRE LRLRQEYFLV SSTIQDILSR HYQLHKTYDN LADKIAIHLN DTHPVLSIPE MMRLLIDEHQ FSWDDAFEVC CQVFSYTNHT LMSEALETWP VDMLGKILPR HLQIIFEIND YFLKTLQEQY PNDTDLLGRA SIIDESNGRR VRMAWLAVVV SHKVNGVSEL HSNLMVQSLF ADFAKIFPGR FTNVTNGVTP RRWLAVANPS LSAVLDEHLG RNWRTDLSLL NELQQHCDFP MVNHAVHQAK LENKKRLAEY IAQQLNVVVN PKALFDVQIK RIHEYKRQLM NVLHVITRYN RIKADPDAKW VPRVNIFGGK AASAYYMAKH IIHLINDVAK VINNDPQIGD KLKVVFIPNY SVSLAQLIIP AADLSEQISL AGTEASGTSN MKFALNGALT IGTLDGANVE MLDHVGADNI FIFGNTAEEV EELRRQGYKP REYYEKDEEL HQVLTQIGSG VFSPEDPGRY RDLVDSLINF GDHYQVLADY RSYVDCQDKV DELYELQEEW TAKAMLNIAN MGYFSSDRTI KEYADHIWHI DPVRL
Length	815
Mol. Wt	93.174 kDa
pI	5.9 (calculated)
Extinction coefficient	133,620 - 134,245 (calc based on 38 Y, 14 W, and 5 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
Domain	101..812	PF00343 Carbohydrate phosphorylase		PMID:19920124
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=glgP taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:16131302	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:947931	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0011198	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P0AC86	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:EG10380	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10380	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:947931	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000373	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0375	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Cellular Levels

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See Help:Cellular levels

Molecule	Organism or Strain	Value	Units	Experimental Conditions	Assay used	Notes	Reference(s)
Protein	Ecoli K-12	57.187+/-0.397	Molecules/cell	Medium: Temperature (°C): Doubling time (min): Growth Rate(min): * Growth phase: other: *		Single Molecule Fluorescence	PMID:20671182
mRNA	Ecoli K-12	0.16591745	Molecules/cell	Medium: Temperature (°C): Doubling time (min): Growth Rate(min): * Growth phase: other: *		by RNA_Seq	PMID:20671182
Protein	E. coli K-12 MG1655	178	molecules/cell/generation	Medium: MOPS Complete Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
Protein	E. coli K-12 MG1655	427	molecules/cell/generation	Medium: MOPS Minimal Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
Protein	E. coli K-12 MG1655	177	molecules/cell/generation	Medium: MOPS Complete without Methionine Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
glgCAP
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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:3564584..3564624 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name	Mutation	Phenotype	Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type	Reference	Notes
microarray	GEO Profiles:b3428 (EcoliWiki Page)	NCBI GEO profiles for glgP
microarray	GenExpDB:b3428 (EcoliWiki Page)	Summary of data for glgP from multiple microarray studies
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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name	Resource Type	Description	Source	Notes
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Notes

Accessions Related to glgP Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:EG10380	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0375	Escherichia coli str. K-12 substr. MG1655
EcoliGenExpDB (EcoliWiki Page)	EcoliGenExpDB:b3428
EcoGene	EcoGene:EG10380	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000373	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0011198	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism	Homologs (Statistics)	Comments
Anopheles gambiae	ENSANGP00000010081 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Apis mellifera	ENSAPMP00000007077 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Arabidopsis thaliana	AT3G46970 (score: 1.000; bootstrap: 100%) AT3G29320 (score: 0.379)	From Inparanoid:20070104
Bos taurus	ENSBTAP00000015277 (score: 1.000; bootstrap: 100%) ENSBTAP00000001373 (score: 0.544) ENSBTAP00000006069 (score: 0.464)	From Inparanoid:20070104
Caenorhabditis briggsae	WBGene00024571 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Caenorhabditis elegans	WBGene00020696 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Canis familiaris	ENSCAFP00000021097 (score: 1.000; bootstrap: 100%) ENSCAFP00000021509 (score: 0.681) ENSCAFP00000006518 (score: 0.539)	From Inparanoid:20070104
Ciona intestinalis	ENSCINP00000013376 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Danio rerio	ZDB-GENE-040928-2 (score: 1.000; bootstrap: 100%) ZDB-CDNA-050522-482 (score: 0.697) ZDB-GENE-050522-482 (score: 0.697) ZDB-CDNA-041205-2 (score: 0.371) ZDB-GENE-041205-1 (score: 0.371)	From Inparanoid:20070104
Dictyostelium discoideum	DDB0191397 (score: 1.000; bootstrap: 100%) DDB0215010 (score: 0.165)	From Inparanoid:20070104
Drosophila melanogaster	FBgn0004507 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Drosophila pseudoobscura	GA20213-PA (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Gallus gallus	ENSGALP00000013845 (score: 1.000; bootstrap: 100%) ENSGALP00000020169 (score: 0.392)	From Inparanoid:20070104
Homo sapiens	ENSP00000216962 (score: 1.000; bootstrap: 100%) ENSP00000216392 (score: 1.000; bootstrap: 100%) ENSP00000164139 (score: 0.741)	From Inparanoid:20070104
Macaca mulatta	ENSMMUP00000019247 (score: 1.000; bootstrap: 100%) ENSMMUP00000029760 (score: 0.672) ENSMMUP00000012061 (score: 0.606)	From Inparanoid:20070104
Monodelphis domestica	ENSMODP00000007972 (score: 1.000; bootstrap: 100%) ENSMODP00000016458 (score: 0.660) ENSMODP00000008261 (score: 0.555)	From Inparanoid:20070104
Mus musculus	MGI:97828 (score: 1.000; bootstrap: 100%) MGI:97830 (score: 1.000; bootstrap: 100%) MGI:97829 (score: 0.677)	From Inparanoid:20070104
Oryza gramene	YP_026218 (score: 0.066) Q9LKJ3 (score: 1.000; bootstrap: 54%) Q8LQ33 (score: 0.905) Q9FPE6 (score: 0.868) Q84P16 (score: 0.180)	From Inparanoid:20070104
Pan troglodytes	ENSPTRP00000010744 (score: 1.000; bootstrap: 100%) ENSPTRP00000006629 (score: 0.664) ENSPTRP00000022865 (score: 0.225)	From Inparanoid:20070104
Rattus norvegicus	ENSRNOP00000028636 (score: 1.000; bootstrap: 100%) ENSRNOP00000010158 (score: 0.749) ENSRNOP00000009183 (score: 0.671)	From Inparanoid:20070104
Saccharomyces cerevisiae	YPR160W (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Takifugu rubripes	NEWSINFRUP00000177048 (score: 1.000; bootstrap: 100%) NEWSINFRUP00000180382 (score: 0.764) NEWSINFRUP00000158156 (score: 0.446) NEWSINFRUP00000143844 (score: 0.342)	From Inparanoid:20070104
Tetraodon nigroviridis	GSTENP00018999001 (score: 1.000; bootstrap: 100%) GSTENP00035781001 (score: 0.530) GSTENP00025010001 (score: 0.521)	From Inparanoid:20070104
Xenopus tropicalis	ENSXETP00000035953 (score: 1.000; bootstrap: 100%) ENSXETP00000018495 (score: 0.634) ENSXETP00000027940 (score: 0.613)	From Inparanoid:20070104
Shigella flexneri	GLGP	From SHIGELLACYC
E. coli O157	GLGP	From ECOO157CYC
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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
Panther (EcoliWiki Page)	PTHR11468:SF0
Superfamily (EcoliWiki Page)	SUPERFAMILY:53756
Pfam (EcoliWiki Page)	PF00343 Carbohydrate phosphorylase
EcoCyc	EcoCyc:EG10380	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10380	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000373	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0375	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0011198	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.00 ^1.01 ^1.02 ^1.03 ^1.04 ^1.05 ^1.06 ^1.07 ^1.08 ^1.09 ^1.10 ^1.11 ^1.12 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.00 ^2.01 ^2.02 ^2.03 ^2.04 ^2.05 ^2.06 ^2.07 ^2.08 ^2.09 ^2.10 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 ^3.2 ^3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ ^5.0 ^5.1 ^5.2 ^5.3 CGSC: The Coli Genetics Stock Center
↑ ^6.0 ^6.1 ^6.2 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

glgP:On One Page

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Notes

Gene

Nomenclature

Notes

Location(s) and DNA Sequence

Notes

Sequence Features

Notes

Alleles and Phenotypes

Notes

Genetic Interactions

Notes

Genetic Resources

Notes

Accessions in Other Databases

Notes

Links

Product(s)

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

Expression

Overview

Cellular Levels

Notes

Transcription and Transcriptional Regulation

Notes

Translation and Regulation of Translation

Notes

Turnover and Regulation of Turnover

Notes

Experimental

Notes

Accessions Related to glgP Expression

Notes

Links

Evolution

Homologs in Other Organisms

Do-It-Yourself Web Tools

Notes

Families

Notes

Links

References

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