ftsH:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

ftsH

Gene Synonym(s)

ftsH, ECK3167, b3178, JW3145, mrsC, tolZ, std, G528, hflB[1][2][3], hflB

Product Desc.

FtsH[3]; HflB[2];

Component of HflB, integral membrane ATP-dependent zinc metallopeptidase[2]

Maintains proper balance of lipopolysaccharide and phospholipid biosunthesis. [4]

Product Synonyms(s)

protease, ATP-dependent zinc-metallo[1], B3178[3][1], Std[3][1], TolZ[3][1], MrsC[3][1], HflB[3][1], FtsH[2][1] , ECK3167, hflB, JW3145, mrsC, std, tolZ, b3178

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): rrmJ-ftsH[3]

Regulation/Activity
Quick Links

porteco.png

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

ftsH

Mnemonic

Filamentation, temperature sensitive

Synonyms

ftsH, ECK3167, b3178, JW3145, mrsC, tolZ, std, G528, hflB[1][2][3], hflB

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

71.62 minutes 

MG1655: 3324957..3323023
<gbrowseImage> name=NC_000913:3323023..3324957 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 3260235..3262169
<gbrowseImage> name=NC_012967:3260235..3262169 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 3210171..3212105
<gbrowseImage> name=NC_012759:3210171..3212105 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 3326790..3324856
<gbrowseImage> name=NC_007779:3324856..3326790 source=W3110 preset=GeneLocation </gbrowseImage>


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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

hflB::Tn5KAN-I-SceI (FB21462)

Insertion at nt 1913 in Minus orientation

PMID:15262929

E. coli Genome Project:FB21060

does not contain pKD46

hflB::Tn5KAN-I-SceI (FB21462)

Insertion at nt 1913 in Minus orientation

PMID:15262929

E. coli Genome Project:FB21061

contains pKD46

ftsH0

CGSC:19371

xxx

xxxx

xxxxx

pmid: 2222222

ftsH1

Growth Phenotype

after 2 hours at 42C the mutation shows inability to form colonies and cell elongation and amount of PBP3 is slightly reduced

Phenotype is similar to ftsH101 at 37C and higher

PMID:1551860 PMID:8106504

ftsH41

PMID:8576050

ftsH101

allows significant export of PhoA across membrane

PMID:8576050 PMID:8106504

partially suppressed by overproduction of HtpG also known as std101

tolZ21 in UM21

Resistant to

Increased Resistance toward Colicin E2

PMID:6389436

The tolZ mutation caused increased Resistance toward E2. This was seen in Strains UM31, -34 & -37 with their respective mutations. See table 3.

tolZ31 in UM31

Resistant to

Increased Resistance toward Colicin E3

PMID:6389436

The tolZ mutation caused increased Resistance toward E3. This was seen in Strains UM21, -34 & -37 with their respective mutations. See table 3.

tolZ34 in UM34

Resistant to

Increased Resistance toward Colicin D

PMID:6389436

The tolZ mutation caused increased Resistance toward D. This was seen in Strains UM21, -31 & -37 with their respective mutations. See table 3.

tolZ21 in Strain UM21

Resistant to

Resistance to Colicin Ia

PMID:6389496

The tolZ mutation conferred resistance toward Ia. This was also seen in UM31, -34 & 37 with their respective tolZ mutations. See table 3.

tolZ37 in Strain UM37

Resistant to

Resistance to Colicin Ib

PMID:6389496

The tolZ mutation conferred resistance toward Ib. This was also seen in UM21, -31 & 34 with their respective tolZ mutations. See table 3.

tolZ21 in UM21

Resistant to

Decreased resistance toward Ampicillin.

PMID:6389496

The tolZ21 mutation caused decreased resistance to Ampicillin. This was also seen in Strains UM31, -34 & 37. See table 5.

tolZ21 in UM21

Resistant to

Decreased resistance toward Neomycin.

PMID:6389496

The tolZ21 mutation caused decreased resistance to Neomycin. This was also seen in Strains UM31, -34 & 37. See table 5.

tolZ21 in UM21

Resistant to

Decreased resistance toward EDTA.

PMID:6389496

The tolZ21 mutation caused decreased resistance to EDTA. This was also seen in Strains UM31, -34 & 37. See table 5.

tolZ21 in Strain UM21

Growth Phenotype

Reduced Aerobic growth

PMID:6389496

The tolZ mutation caused decrease growth under aerobic conditions, approximately to 45 percent of the wild type. See figure 1.

tolZ21 in Strain UM21

Growth Phenotype

Reduced Anaerobic growth

PMID:6389496

The tolZ mutation caused decrease growth under aerobic conditions, approximately to 60 percent of the wild type. See figure 1.

tolZ21 in strain UM21

Metabolic Uptake

Decrease Uptake of Various amino acids.

PMID:6389496

Decreased uptake of the proline, glutamine and methionine. See figure 2.

tolZ21 in UM21

Metabolic Uptake

Reduced uptake of Sugars

PMID:6389496

The tolZ mutation caused reduced uptake of Thiomethyl-beta-D-galactoside and alpha-methyl-D-glucoside. See Figure 2.

tolZ21 in UM21

Metabolic Uptake

Decreased uptake of triphenylmethylphosphonium

PMID:6389496

The tolZ mutation caused reduced uptake of the ion triphenylmethylphosphonium. See figure 2.

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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691

Status:

Primer 1:

Primer 2:

18H7

Kohara Phage

Genobase

PMID:3038334

14F11

Kohara Phage

Genobase

PMID:3038334

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3178

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:HFLB

CGSC (EcoliWiki Page)

CGSC:735

EcoCyc (EcoliWiki Page)

ECOCYC:EG11506

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:947690

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

FtsH

Synonyms

protease, ATP-dependent zinc-metallo[1], B3178[3][1], Std[3][1], TolZ[3][1], MrsC[3][1], HflB[3][1], FtsH[2][1] , ECK3167, hflB, JW3145, mrsC, std, tolZ, b3178

Product description

FtsH[3]; HflB[2];

Component of HflB, integral membrane ATP-dependent zinc metallopeptidase[2]

Maintains proper balance of lipopolysaccharide and phospholipid biosunthesis. [4]

EC number (for enzymes)

3.4.24.-[1]

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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0000166

nucleotide binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003593

F

Seeded from EcoCyc (v14.0)

complete

GO:0000166

nucleotide binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc (v14.0)

complete

GO:0004222

metalloendopeptidase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000642

F

Seeded from EcoCyc (v14.0)

complete

GO:0004222

metalloendopeptidase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005936

F

Seeded from EcoCyc (v14.0)

complete

GO:0004222

metalloendopeptidase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011546

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000642

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003959

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003960

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011546

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0067

F

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0997

C

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003

C

Seeded from EcoCyc (v14.0)

complete

GO:0006508

proteolysis

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000642

P

Seeded from EcoCyc (v14.0)

complete

GO:0007049

cell cycle

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0131

P

Seeded from EcoCyc (v14.0)

complete

GO:0008233

peptidase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0645

F

Seeded from EcoCyc (v14.0)

complete

GO:0008237

metallopeptidase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0482

F

Seeded from EcoCyc (v14.0)

complete

GO:0008270

zinc ion binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011546

F

Seeded from EcoCyc (v14.0)

complete

GO:0008270

zinc ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0862

F

Seeded from EcoCyc (v14.0)

complete

GO:0016021

integral to membrane

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011546

C

Seeded from EcoCyc (v14.0)

complete

GO:0016021

integral to membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0812

C

Seeded from EcoCyc (v14.0)

complete

GO:0016021

integral to membrane

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-9909

C

Seeded from EcoCyc (v14.0)

complete

GO:0051301

cell division

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0132

P

Seeded from EcoCyc (v14.0)

complete

GO:0016887

ATPase activity

PMID:7781608

IDA: Inferred from Direct Assay

F

complete

GO:0006508

proteolysis

PMID:7781608

IDA: Inferred from Direct Assay

P

complete

GO:0043273

CTPase activity

PMID:7781608

IDA: Inferred from Direct Assay

F

complete

GO:0008270

zinc ion binding

PMID:7781608

IDA: Inferred from Direct Assay

F

complete

GO:0030145

manganese ion binding

PMID:7781608

IDA: Inferred from Direct Assay

F

complete

GO:0016021

integral to membrane

PMID:8444797

IDA: Inferred from Direct Assay

C

immunoelectron microscopy

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of HflB, integral membrane ATP-dependent zinc metallopeptidase

could be indirect

Protein

hflC

PMID:15690043

Experiment(s):EBI-894532

Protein

nfi

PMID:15690043

Experiment(s):EBI-894532

Protein

rplD

PMID:15690043

Experiment(s):EBI-894532

Protein

rplL

PMID:15690043

Experiment(s):EBI-894532

Protein

rplU

PMID:15690043

Experiment(s):EBI-894532

Protein

rpsG

PMID:15690043

Experiment(s):EBI-894532

Protein

rplU

PMID:19402753

LCMS(ID Probability):99.6

Protein

nfi

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplD

PMID:19402753

LCMS(ID Probability):99.6

Protein

hflC

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplL

PMID:19402753

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

plasma membrane

C-terminus localized in the cytoplasm with 2 predicted transmembrane domains

Daley et al. (2005) [5]

plasma membrane

Inner Membrane

PMID:8444797, PMID:1925026, PMID:8106505, PMID:7781608

EchoLocation:ftsH


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Notes

There is an estimated 400 mc/cell[6]

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MAKNLILWLV IAVVLMSVFQ SFGPSESNGR KVDYSTFLQE VNNDQVREAR INGREINVTK
KDSNRYTTYI PVQDPKLLDN LLTKNVKVVG EPPEEPSLLA SIFISWFPML LLIGVWIFFM
RQMQGGGGKG AMSFGKSKAR MLTEDQIKTT FADVAGCDEA KEEVAELVEY LREPSRFQKL
GGKIPKGVLM VGPPGTGKTL LAKAIAGEAK VPFFTISGSD FVEMFVGVGA SRVRDMFEQA
KKAAPCIIFI DEIDAVGRQR GAGLGGGHDE REQTLNQMLV EMDGFEGNEG IIVIAATNRP
DVLDPALLRP GRFDRQVVVG LPDVRGREQI LKVHMRRVPL APDIDAAIIA RGTPGFSGAD
LANLVNEAAL FAARGNKRVV SMVEFEKAKD KIMMGAERRS MVMTEAQKES TAYHEAGHAI
IGRLVPEHDP VHKVTIIPRG RALGVTFFLP EGDAISASRQ KLESQISTLY GGRLAEEIIY
GPEHVSTGAS NDIKVATNLA RNMVTQWGFS EKLGPLLYAE EEGEVFLGRS VAKAKHMSDE
TARIIDQEVK ALIERNYNRA RQLLTDNMDI LHAMKDALMK YETIDAPQID DLMARRDVRP
PAGWEEPGAS NNSGDNGSPK APRPVDEPRT PNPGNTMSEQ LGDK
Length

644

Mol. Wt

70.708 kDa

pI

6.2 (calculated)

Extinction coefficient

42,400 - 42,650 (calc based on 10 Y, 5 W, and 2 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

188..321

PF00004 ATPase family associated with various cellular activities (AAA)

PMID:19920124

Domain

381..592

PF01434 Peptidase family M41

PMID:19920124

Domain

5..93

PF06480 FtsH Extracellular

PMID:19920124

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<motif_map/>

tmhmm.php?gene=hflB&show=pic&.jpg
Click the image to view raw output from TMHMM.

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ftsH taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference

Antibody

from rabbit

PMID:8444797

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131068

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947690

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0AAI3

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947690

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

5.79E+02

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

Ecoli K-12

83.183+/-0.302

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

Protein

E. coli K-12 MG1655

4550

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

1124

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

2091

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

rrmJ-hflB

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File:.jpg

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Decreased levels of FtsH leads to slower growth rate and protein export. [7]

Depletion of FtsH leads to slower export of OmpA. [8]

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:3324937..3324977 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b3178 (EcoliWiki Page)

NCBI GEO profiles for hflB

microarray

GenExpDB:b3178 (EcoliWiki Page)

Summary of data for hflB from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (3324506..3324704) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ04; Well:E1[9]

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Notes

Accessions Related to ftsH Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3178

RegulonDB

RegulonDB:

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:

Escherichia coli str. K-12 substr. MG1655

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Notes

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000025952 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000010411 (score: 1.000; bootstrap: 74%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G42270 (score: 1.000; bootstrap: 92%)
  • AT1G50250 (score: 0.754)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000014942 (score: 1.000; bootstrap: 56%)
  • ENSBTAP00000027074 (score: 0.462)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00035321 (score: 1.000; bootstrap: 82%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00004978 (score: 1.000; bootstrap: 82%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000027762 (score: 1.000; bootstrap: 55%)
  • ENSCAFP00000029382 (score: 0.068)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000019340 (score: 1.000; bootstrap: 81%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040426-1327 (score: 1.000; bootstrap: 99%)
  • ZDB-CDNA-040425-2261 (score: 1.000; bootstrap: 99%)
  • ZDB-CDNA-040808-63 (score: 0.203)
  • ZDB-GENE-040808-60 (score: 0.203)
  • ZDB-CDNA-041024-4 (score: 0.170)
  • ZDB-GENE-030131-304 (score: 0.170)
  • ZDB-CDNA-040625-102 (score: 0.150)
  • ZDB-GENE-040625-69 (score: 0.150)
  • ZDB-CDNA-040425-698 (score: 0.149)
  • ZDB-GENE-030131-8730 (score: 0.149)
  • ZDB-CDNA-040625-52 (score: 0.119)
  • ZDB-GENE-030131-666 (score: 0.119)
  • ZDB-CDNA-040425-1347 (score: 0.105)
  • ZDB-GENE-030131-5083 (score: 0.105)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0185211 (score: 1.000; bootstrap: 74%)
  • DDB0229917 (score: 0.152)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0036702 (score: 1.000; bootstrap: 55%)
  • FBgn0024992 (score: 0.061)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA19652-PA (score: 1.000; bootstrap: 56%)
  • GA15413-PA (score: 0.060)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000022434 (score: 1.000; bootstrap: 68%)
  • ENSGALP00000010002 (score: 0.078)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000269143 (score: 1.000; bootstrap: 57%)
  • ENSP00000268704 (score: 0.070)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000021544 (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000004065 (score: 1.000; bootstrap: 70%)
  • ENSMODP00000026769 (score: 0.567)

From Inparanoid:20070104

Mus musculus

  • MGI:1928277 (score: 1.000; bootstrap: 59%)
  • MGI:1916847 (score: 0.679)
  • MGI:2385906 (score: 0.056)

From Inparanoid:20070104

Oryza gramene

  • Q5Z974 (score: 1.000; bootstrap: 95%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000016808 (score: 1.000; bootstrap: 69%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000037053 (score: 1.000; bootstrap: 63%)
  • ENSRNOP00000024632 (score: 0.567)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YPR024W (score: 1.000; bootstrap: 59%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC5439 (score: 1.000; bootstrap: 82%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000147006 (score: 1.000; bootstrap: 65%)
  • NEWSINFRUP00000155357 (score: 0.377)
  • NEWSINFRUP00000178429 (score: 0.317)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00004494001 (score: 1.000; bootstrap: 67%)
  • GSTENP00015174001 (score: 0.611)
  • GSTENP00008188001 (score: 0.448)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000005019 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

FTSH

From SHIGELLACYC

E. coli O157

HFLB

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF01434 Peptidase family M41

Pfam (EcoliWiki Page)

PF00004 ATPase family associated with various cellular activities (AAA)

Panther (EcoliWiki Page)

PTHR23076:SF10

Superfamily (EcoliWiki Page)

SUPERFAMILY:52540

Superfamily (EcoliWiki Page)

SUPERFAMILY:140990

Pfam (EcoliWiki Page)

PF06480 FtsH Extracellular

EcoCyc

EcoCyc:

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 1.14 1.15 1.16 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.00 3.01 3.02 3.03 3.04 3.05 3.06 3.07 3.08 3.09 3.10 3.11 3.12 3.13 3.14 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 Inagawa, T et al. (2001) Defective plasmid partition in ftsH mutants of Escherichia coli. Mol. Genet. Genomics 265 755-62 PubMed
  5. ↑ Daley, DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308 1321-3 PubMed
  6. ↑ Tomoyasu, T et al. (1993) Topology and subcellular localization of FtsH protein in Escherichia coli. J. Bacteriol. 175 1352-7 PubMed
  7. ↑ Shirai, Y et al. (1996) Suppression of ftsH mutant phenotypes by overproduction of molecular chaperones. J. Bacteriol. 178 1141-5 PubMed
  8. ↑ Akiyama, Y et al. (1994) Involvement of FtsH in protein assembly into and through the membrane. I. Mutations that reduce retention efficiency of a cytoplasmic reporter. J. Biol. Chem. 269 5218-24 PubMed
  9. ↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

Categories

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