ftsE:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

ftsE

Gene Synonym(s)

ECK3447, b3463, JW3428[1], JW3428

Product Desc.

cell division protein FtsE[2][3];

Component of FtsE/FtsX ABC transporter[2][3]

ATP-binding protein associated with the inner membrane via FtsX; cell division, null mutant has filamentous growth and requires high salt for viability[4]

Product Synonyms(s)

predicted transporter subunit: ATP-binding component of ABC superfamily[1], B3463[2][1], FtsE[2][1] , ECK3447, JW3428, b3463

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ftsYEX[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Divisome, non-essential.[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

ftsE

Mnemonic

Filamentation, temperature sensitive

Synonyms

ECK3447, b3463, JW3428[1], JW3428

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

77.59 minutes 

MG1655: 3600770..3600102
<gbrowseImage> name=NC_000913:3600102..3600770 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 3533432..3532764
<gbrowseImage> name=NC_012967:3532764..3533432 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 3488596..3489264
<gbrowseImage> name=NC_012759:3488596..3489264 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 4037668..4038336
<gbrowseImage> name=NC_007779:4037668..4038336 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 3698515..3697847
<gbrowseImage> name=NC_010473:3697847..3698515 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ftsE::Tn5KAN-I-SceI (FB21222)

Insertion at nt 284 in Plus orientation

PMID:15262929

E. coli Genome Project:FB21222

does not contain pKD46

ftsE::Tn5KAN-I-SceI (FB21223)

Insertion at nt 284 in Plus orientation

PMID:15262929

E. coli Genome Project:FB21223

contains pKD46

ftsE1181

Growth Phenotype

forms small chains of swollen cells at 42 C instead of forming filaments

PMID:3280547

PMID:4583216

ftsE(Ts)

Growth Phenotype

cell division and growth defects

PMID:9658012

One cause for growth cessation in mutant is the translocation of K+ -pump proteins in cytoplasmic membrane


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW3428

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCATTCGCTTTGAACATGTCAG

Primer 2:CCTTCATGaCCCACGCCTCCATGCAAGTGA

7H7

Kohara Phage

Genobase

PMID:3038334

1B6

Kohara Phage

Genobase

PMID:3038334

zhg-50::Tn10

Linked marker

CAG18450 = CGSC7450[5]

est. P1 cotransduction: 74% [6]
Synonyms:zhf-50::Tn10, zhf-5::Tn10

zic-4901::Tn10

Linked marker

CAG18492 = CGSC7457[5]

est. P1 cotransduction: % [6]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10340

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10340

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000334

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:947968

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0336

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011313

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

FtsE

Synonyms

predicted transporter subunit: ATP-binding component of ABC superfamily[1], B3463[2][1], FtsE[2][1] , ECK3447, JW3428, b3463

Product description

cell division protein FtsE[2][3];

Component of FtsE/FtsX ABC transporter[2][3]

ATP-binding protein associated with the inner membrane via FtsX; cell division, null mutant has filamentous growth and requires high salt for viability[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0000166

nucleotide binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003593

F

Seeded from EcoCyc (v14.0)

complete

GO:0000166

nucleotide binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc (v14.0)

complete

GO:0005515

protein binding

PMID:10048040

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc (v14.0)

complete

GO:0005515

protein binding

PMID:17307852

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

PMID:10048040

IDA: Inferred from Direct Assay

C

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003439

F

Seeded from EcoCyc (v14.0)

complete

GO:0000300

peripheral to membrane of membrane fraction

PMID:10048040

IDA: Inferred from Direct Assay

C

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005286

F

Seeded from EcoCyc (v14.0)

complete

GO:0005515

protein binding

PMID:10048040

IDA: Inferred from Direct Assay

F

EcoliWiki:ftsX|EcoliWiki:ftsE

complete

GO:0051301

cell division

PMID:4583216

IMP: Inferred from Mutant Phenotype

P

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013505

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

PMID:10048040

IDA: Inferred from Direct Assay

F

complete

GO:0046677

response to antibiotic

PMID:4583216

IMP: Inferred from Mutant Phenotype

P

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR017871

F

Seeded from EcoCyc (v14.0)

complete

GO:0051301

cell division

PMID:9658012

IMP: Inferred from Mutant Phenotype

P

complete

GO:0005524

ATP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0067

F

Seeded from EcoCyc (v14.0)

complete

GO:0000910

cytokinesis

PMID:9658012

IMP: Inferred from Mutant Phenotype

P

complete

GO:0007049

cell cycle

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0131

P

Seeded from EcoCyc (v14.0)

complete

GO:0005515

protein binding

PMID:17307852

IDA: Inferred from Direct Assay

F

EcoliWiki:ftsZ

complete

GO:0016887

ATPase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003439

F

Seeded from EcoCyc (v14.0)

complete

GO:0032155

cell division site part

PMID:14729705

IDA: Inferred from Direct Assay

C

complete

GO:0016887

ATPase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR017871

F

Seeded from EcoCyc (v14.0)

complete

GO:0017111

nucleoside-triphosphatase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003593

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of FtsE/FtsX ABC transporter

could be indirect

Protein

groL

PMID:16606699

Experiment(s):EBI-1145961

Protein

rsmD

PMID:16606699

Experiment(s):EBI-1145961

Protein

hchA

PMID:16606699

Experiment(s):EBI-1145961

Protein

prs

PMID:16606699

Experiment(s):EBI-1145961

Protein

slyD

PMID:16606699

Experiment(s):EBI-1145961

Protein

groL

PMID:15690043

Experiment(s):EBI-881078, EBI-888030

Protein

hldD

PMID:15690043

Experiment(s):EBI-881078

Protein

rpsB

PMID:15690043

Experiment(s):EBI-881078

Protein

tufA

PMID:15690043

Experiment(s):EBI-881078

Protein

ynaA

PMID:15690043

Experiment(s):EBI-888030

Protein

yfjV

PMID:15690043

Experiment(s):EBI-888030

Protein

cdd

PMID:15690043

Experiment(s):EBI-888030

Protein

ibpA

PMID:15690043

Experiment(s):EBI-888030

Protein

rplB

PMID:15690043

Experiment(s):EBI-888030

Protein

rplP

PMID:15690043

Experiment(s):EBI-888030

Protein

rplR

PMID:15690043

Experiment(s):EBI-888030

Protein

rplU

PMID:15690043

Experiment(s):EBI-888030

Protein

rplV

PMID:15690043

Experiment(s):EBI-888030

Protein

rpmC

PMID:15690043

Experiment(s):EBI-888030

Protein

rpsE

PMID:15690043

Experiment(s):EBI-888030

Protein

rpsG

PMID:15690043

Experiment(s):EBI-888030

Protein

rpsI

PMID:15690043

Experiment(s):EBI-888030

Protein

rpsJ

PMID:15690043

Experiment(s):EBI-888030

Protein

rpsP

PMID:15690043

Experiment(s):EBI-888030

Protein

sbcC

PMID:15690043

Experiment(s):EBI-888030

Protein

ushA

PMID:15690043

Experiment(s):EBI-888030

Protein

rplK

PMID:15690043

Experiment(s):EBI-888030

Protein

groL

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):17.053160

Protein

ibpA

PMID:19402753

LCMS(ID Probability):99.0

Protein

groS

PMID:19402753

LCMS(ID Probability):99.0 MALDI(Z-score):17.053160

Protein

murC

PMID:19402753

MALDI(Z-score):28.655358

Protein

sbcC

PMID:19402753

LCMS(ID Probability):99.0

Protein

ushA

PMID:19402753

LCMS(ID Probability):99.0

Protein

cdd

PMID:19402753

LCMS(ID Probability):99.0

Protein

murB

PMID:19402753

MALDI(Z-score):37.523561

Protein

FtsZ

interacts directly and is independent of FtsX

PMID:17307852


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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

cytoplasm

From EcoCyc[3]


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MIRFEHVSKA YLGGRQALQG VTFHMQPGEM AFLTGHSGAG KSTLLKLICG IERPSAGKIW
FSGHDITRLK NREVPFLRRQ IGMIFQDHHL LMDRTVYDNV AIPLIIAGAS GDDIRRRVSA
ALDKVGLLDK AKNFPIQLSG GEQQRVGIAR AVVNKPAVLL ADEPTGNLDD ALSEGILRLF
EEFNRVGVTV LMATHDINLI SRRSYRMLTL SDGHLHGGVG HE
Length

222

Mol. Wt

24.439 kDa

pI

9.7 (calculated)

Extinction coefficient

9,970 - 10,095 (calc based on 3 Y, 1 W, and 1 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

42..166

PF00005 ABC transporter

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ftsE taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131335

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947968

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011313

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A9R7

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10340

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10340

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947968

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000334

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0336

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MG1655

967

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

320

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

649

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

ftsYEX

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:3600750..3600790 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b3463 (EcoliWiki Page)

NCBI GEO profiles for ftsE

microarray

GenExpDB:b3463 (EcoliWiki Page)

Summary of data for ftsE from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to ftsE Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10340

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0336

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3463

EcoGene

EcoGene:EG10340

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000334

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011313

Escherichia coli str. K-12 substr. MG1655

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Notes

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Drosophila melanogaster

  • FBgn0031362 (score: 1.000; bootstrap: 69%)
  • FBgn0032167 (score: 0.229)
  • FBgn0025683 (score: 0.225)
  • FBgn0020762 (score: 0.211)
  • FBgn0031516 (score: 0.208)
  • FBgn0031220 (score: 0.184)
  • FBgn0052091 (score: 0.175)
  • FBgn0031449 (score: 0.159)
  • FBgn0031515 (score: 0.153)
  • FBgn0003996 (score: 0.077)
  • FBgn0003515 (score: 0.074)
  • FBgn0020445 (score: 0.059)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA14594-PA (score: 1.000; bootstrap: 57%)
  • GA16356-PA (score: 0.236)
  • GA15545-PA (score: 0.235)
  • GA19180-PA (score: 0.225)
  • GA18458-PA (score: 0.185)
  • GA16671-PA (score: 0.176)
  • GA16397-PA (score: 0.154)
  • GA15454-PA (score: 0.057)

From Inparanoid:20070104

Shigella flexneri

FTSE

From SHIGELLACYC

E. coli O157

FTSE

From ECOO157CYC

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Do-It-Yourself Web Tools

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00005 ABC transporter

Panther (EcoliWiki Page)

PTHR24220:SF36

Superfamily (EcoliWiki Page)

SUPERFAMILY:52540

EcoCyc

EcoCyc:EG10340

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10340

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000334

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0336

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011313

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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