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On One Page

Quickview |

Gene |

Product(s) |

Expression|

Evolution |

References |

Quickview

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Standard Name	era
Gene Synonym(s)	ECK2564, b2566, JW2550, rbaA, sdgE^[1], sdgE
Product Desc.	GTP-binding protein^[2]^[3] Ribosome-associated GTPase essential for growth; also required for a normal adaptation response to thermal stress; GTP-dependent autophosphorylating protein kinase activity; membrane-associated, 16S rRNA-binding protein; cell cycle arrest, possible checkp^[4]
Product Synonyms(s)	membrane-associated, 16S rRNA-binding GTPase^[1], B2566^[2]^[1], SdgE^[2]^[1], RbaA^[2]^[1], Era^[2]^[1] , ECK2564, JW2550, sdgE, b2566
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): rnc-era-recO-pdxJ-acpS^[2], rnc-era^[2]
Regulation/Activity
Quick Links
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Notes

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era was demonstrated to be an essential gene (Takiff, 1992), consistent with the results of Baba (2006). Growth rate regulated. Binds MazG; era mutation suppresses dnaG-Ts.^[4]

Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name	era
Mnemonic	E. coli ras-like
Synonyms	ECK2564, b2566, JW2550, rbaA, sdgE^[1], sdgE
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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain	Map location	Genome coordinates	Genome browsers	Sequence links
MG1655	58.2 minutes, 58.2 minutes	MG1655: 2701408..2700503 <gbrowseImage> name=NC_000913:2700503..2701408 source=MG1655 preset=GeneLocation </gbrowseImage>	EcoCyc GBrowse(MG1655)	FASTA Dump EcoCyc Sequence Dump
REL606		NC_012967: 2624878..2623973 <gbrowseImage> name=NC_012967:2623973..2624878 source=REL606 preset=GeneLocation </gbrowseImage>	GBrowse (REL606)	FASTA Dump
BW2952		NC_012759: 2586308..2587213 <gbrowseImage> name=NC_012759:2586308..2587213 source=BW2952 preset=GeneLocation </gbrowseImage>	GBrowse (BW2952)	FASTA Dump
W3110		W3110: 2702042..2701137 <gbrowseImage> name=NC_007779:2701137..2702042 source=W3110 preset=GeneLocation </gbrowseImage>	GBrowse(W3110)	FASTA Dump
DH10B		DH10B: 2793173..2792268 <gbrowseImage> name=NC_010473:2792268..2793173 source=DH10B preset=GeneLocation </gbrowseImage>	GBrowse(DH10B)	FASTA Dump
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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type	Strain	Genomic Location	Evidence	Reference	Notes
Coding Start (SO:0000323)	MG1655	2700506	Edman degradation	PMID:2105934
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele	AA change(s)	Phenotype: Type	Phenotype: Description	Reference	Comments
eraA156D	A156D		Confers sensitivity to cold		seeded from UniProt:P06616
eraE200K	E200K		Confers sensitivity to cold		seeded from UniProt:P06616
eraP17V	P17V		Confers sensitivity to cold		seeded from UniProt:P06616
eraN26S	N26S		Confers sensitivity to cold		seeded from UniProt:P06616
era::cat		Auxotrophies	Insertion of cat cassette antibiotic disrupted gene expression era and prevented growth, figure 5.	PMID:2540151	srtain history: W3110
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Notes

Genetic Interactions

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Interactor	Interaction	Allele	Score(s)	Reference(s)	Accessions	Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource	Resource Type	Source	Notes/Reference
JW2550	Plasmid clone	Shigen	PMID:16769691 Status:Clone OK Primer 1:GCCAGCATCGATAAAAGTTACTG Primer 2:CCAAGATCGTCAACGTAACCGAG
7G4	Kohara Phage	Genobase	PMID:3038334
4A12	Kohara Phage	Genobase	PMID:3038334
zfh-208::Tn10	Linked marker	CAG18481 = CGSC7417^[5]	est. P1 cotransduction: 21% ^[6] Synonyms:zff-208::Tn10
nadB51::Tn10	Linked marker	CAG18480 = CGSC7419^[5]	est. P1 cotransduction: 73% ^[6]
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:EG10270	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10270	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000264	Escherichia coli str. K-12 substr. MG1655
NCBI (EcoliWiki Page)	GeneID:947036	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0266	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0008440	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name	Era
Synonyms	membrane-associated, 16S rRNA-binding GTPase^[1], B2566^[2]^[1], SdgE^[2]^[1], RbaA^[2]^[1], Era^[2]^[1] , ECK2564, JW2550, sdgE, b2566
Product description	GTP-binding protein^[2]^[3] Ribosome-associated GTPase essential for growth; also required for a normal adaptation response to thermal stress; GTP-dependent autophosphorylating protein kinase activity; membrane-associated, 16S rRNA-binding protein; cell cycle arrest, possible checkp^[4]
EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0000166	nucleotide binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0547	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003723	RNA binding	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_00367	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003723	RNA binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR004044	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003723	RNA binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR005662	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003723	RNA binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR009019	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003723	RNA binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0694	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005525	GTP binding	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_00367	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005525	GTP binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR002917	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005525	GTP binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR005225	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005525	GTP binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR005662	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005525	GTP binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0342	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005622	intracellular	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR002917	C	Seeded from EcoCyc (v14.0)	complete
	GO:0005622	intracellular	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR005662	C	Seeded from EcoCyc (v14.0)	complete
	GO:0005886	plasma membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-1003	C	Seeded from EcoCyc (v14.0)	complete
	GO:0016020	membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0472	C	Seeded from EcoCyc (v14.0)	complete
	GO:0019898	extrinsic to membrane	GO_REF:0000023	IEA: Inferred from Electronic Annotation	SP_SL:SL-9903	C	Seeded from EcoCyc (v14.0)	complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	References	Evidence
Protein	lon	PMID:15690043	Experiment(s):EBI-880067
Protein	rpsB	PMID:15690043	Experiment(s):EBI-880067
Protein	rpsE	PMID:15690043	Experiment(s):EBI-880067
Protein	tufA	PMID:15690043	Experiment(s):EBI-880067
Protein	insB2	PMID:16606699	Experiment(s):EBI-1143298
Protein	yciH	PMID:16606699	Experiment(s):EBI-1143298
Protein	rpsD	PMID:16606699	Experiment(s):EBI-1143298, EBI-1143298
Protein	sirB2	PMID:16606699	Experiment(s):EBI-1143298
Protein	rpsM	PMID:16606699	Experiment(s):EBI-1143298
Protein	rpsI	PMID:16606699	Experiment(s):EBI-1143298
Protein	yehC	PMID:16606699	Experiment(s):EBI-1143298
Protein	rplB	PMID:16606699	Experiment(s):EBI-1143298
Protein	insB4	PMID:16606699	Experiment(s):EBI-1143298
Protein	rpsF	PMID:16606699	Experiment(s):EBI-1143298
Protein	rplQ	PMID:16606699	Experiment(s):EBI-1143298
Protein	slyD	PMID:16606699	Experiment(s):EBI-1143298
Protein	yaeJ	PMID:16606699	Experiment(s):EBI-1143298
Protein	rplU	PMID:16606699	Experiment(s):EBI-1143298
Protein	rpsE	PMID:16606699	Experiment(s):EBI-1143298
Protein	fimB	PMID:16606699	Experiment(s):EBI-1143298
Protein	fabB	PMID:19402753	MALDI(Z-score):17.053160
Protein	tufB	PMID:19402753	MALDI(Z-score):20.450421
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MSIDKSYCGF IAIVGRPNVG KSTLLNKLLG QKISITSRKA QTTRHRIVGI HTEGAYQAIY VDTPGLHMEE KRAINRLMNK AASSSIGDVE LVIFVVEGTR WTPDDEMVLN KLREGKAPVI LAVNKVDNVQ EKADLLPHLQ FLASQMNFLD IVPISAETGL NVDTIAAIVR KHLPEATHHF PEDYITDRSQ RFMASEIIRE KLMRFLGAEL PYSVTVEIER FVSNERGGYD INGLILVERE GQKKMVIGNK GAKIKTIGIE ARKDMQEMFE APVHLELWVK VKSGWADDER ALRSLGYVDD L
Length	301
Mol. Wt	33.81 kDa
pI	7.2 (calculated)
Extinction coefficient	26,930 - 27,055 (calc based on 7 Y, 3 W, and 1 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	References
Domain	20..125	PF01926 GTPase of unknown function	PMID:19920124
Domain	233..297	PF07650 KH domain	PMID:19920124
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=era taxon=562,83333 </beststructure>

Models

View models at:

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</protect>

Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:16130491	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:947036	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0008440	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P06616	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:EG10270	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10270	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:947036	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000264	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0266	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Cellular Levels

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See Help:Cellular levels

Molecule	Organism or Strain	Value	Units	Experimental Conditions	Assay used	Notes	Reference(s)
Protein	Ecoli K-12	0.779+/-0.057	Molecules/cell	Medium: Temperature (°C): Doubling time (min): Growth Rate(min): * Growth phase: other: *		Single Molecule Fluorescence	PMID:20671182
mRNA	Ecoli K-12	0.14640884	Molecules/cell	Medium: Temperature (°C): Doubling time (min): Growth Rate(min): * Growth phase: other: *		by RNA_Seq	PMID:20671182
Protein	E. coli K-12 MG1655	2832	molecules/cell/generation	Medium: MOPS Complete Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
Protein	E. coli K-12 MG1655	610	molecules/cell/generation	Medium: MOPS Minimal Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
Protein	E. coli K-12 MG1655	1275	molecules/cell/generation	Medium: MOPS Complete without Methionine Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
rnc-era-recO-pdxJ-acpS
rnc-era
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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:2701388..2701428 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

</protect>

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name	Mutation	Phenotype	Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type	Reference	Notes
microarray	GEO Profiles:b2566 (EcoliWiki Page)	NCBI GEO profiles for era
microarray	GenExpDB:b2566 (EcoliWiki Page)	Summary of data for era from multiple microarray studies
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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name	Resource Type	Description	Source	Notes
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Notes

Accessions Related to era Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:EG10270	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0266	Escherichia coli str. K-12 substr. MG1655
EcoliGenExpDB (EcoliWiki Page)	EcoliGenExpDB:b2566
EcoGene	EcoGene:EG10270	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000264	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0008440	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism	Homologs (Statistics)	Comments
Anopheles gambiae	ENSANGP00000002770 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Arabidopsis thaliana	AT5G66470 (score: 1.000; bootstrap: 96%)	From Inparanoid:20070104
Bos taurus	ENSBTAP00000020770 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Canis familiaris	ENSCAFP00000027759 (score: 1.000; bootstrap: 91%)	From Inparanoid:20070104
Ciona intestinalis	ENSCINP00000007582 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Dictyostelium discoideum	DDB0219361 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Drosophila melanogaster	FBgn0038106 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Gallus gallus	ENSGALP00000006355 (score: 1.000; bootstrap: 99%)	From Inparanoid:20070104
Homo sapiens	ENSP00000254928 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Macaca mulatta	ENSMMUP00000003721 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Monodelphis domestica	ENSMODP00000024095 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Mus musculus	MGI:1889295 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Oryza gramene	Q6ZJ99 (score: 1.000; bootstrap: 56%)	From Inparanoid:20070104
Pan troglodytes	ENSPTRP00000015257 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Rattus norvegicus	ENSRNOP00000014386 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Takifugu rubripes	NEWSINFRUP00000146179 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Tetraodon nigroviridis	GSTENP00016229001 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Xenopus tropicalis	ENSXETP00000042501 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Shigella flexneri	ERA	From SHIGELLACYC
E. coli O157	ERA	From ECOO157CYC
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Do-It-Yourself Web Tools

Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
Pfam (EcoliWiki Page)	PF01926 GTPase of unknown function
Superfamily (EcoliWiki Page)	SUPERFAMILY:52540
Panther (EcoliWiki Page)	PTHR11649:SF3
Superfamily (EcoliWiki Page)	SUPERFAMILY:54814
Pfam (EcoliWiki Page)	PF07650 KH domain
EcoCyc	EcoCyc:EG10270	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10270	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000264	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0266	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0008440	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.00 ^1.01 ^1.02 ^1.03 ^1.04 ^1.05 ^1.06 ^1.07 ^1.08 ^1.09 ^1.10 ^1.11 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.00 ^2.01 ^2.02 ^2.03 ^2.04 ^2.05 ^2.06 ^2.07 ^2.08 ^2.09 ^2.10 ^2.11 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 ^4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ ^5.0 ^5.1 CGSC: The Coli Genetics Stock Center
↑ ^6.0 ^6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

era:On One Page

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Notes

Gene

Nomenclature

Notes

Location(s) and DNA Sequence

Notes

Sequence Features

Notes

Alleles and Phenotypes

Notes

Genetic Interactions

Notes

Genetic Resources

Notes

Accessions in Other Databases

Notes

Links

Product(s)

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

Expression

Overview

Cellular Levels

Notes

Transcription and Transcriptional Regulation

Notes

Translation and Regulation of Translation

Notes

Turnover and Regulation of Turnover

Notes

Experimental

Notes

Accessions Related to era Expression

Notes

Links

Evolution

Homologs in Other Organisms

Do-It-Yourself Web Tools

Notes

Families

Notes

Links

References

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