dnaE:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

dnaE

Gene Synonym(s)

ECK0183, b0184, JW0179, polC, sdgC[1], sdgC

Product Desc.

DNA polymerase III, α subunit[2][3];

Component of DNA polymerase III, core enzyme[3]; DNA polymerase III, holoenzyme[3]

DNA polymerase III, alpha subunit; suppressor of dnaG-Ts[4]

Product Synonyms(s)

DNA polymerase III alpha subunit[1], B0184[2][1], SdgC[2][1], PolC[2][1], DnaE[2][1] , ECK0183, JW0179, polC, sdgC, b0184

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yaeT-hlpA-lpxD-fabZ-lpxAB-rnhB-dnaE[2], ecfK-skp-lpxD-fabZ-lpxAB-rnhB-dnaE

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Has a PHP domin, like YcdX.[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

dnaE

Mnemonic

DNA

Synonyms

ECK0183, b0184, JW0179, polC, sdgC[1], sdgC

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

4.42 minutes 

MG1655: 205126..208608
<gbrowseImage> name=NC_000913:205126..208608 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 207968..211450
<gbrowseImage> name=NC_012967:207968..211450 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 205125..208607
<gbrowseImage> name=NC_012759:205125..208607 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 205126..208608
<gbrowseImage> name=NC_007779:205126..208608 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 179230..182712
<gbrowseImage> name=NC_010473:179230..182712 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

dnaE1026(ts)

temperature sensitive

CGSC:8012

dnaE486(ts)

temperature sensitive

CGSC:5641

dnaE1044

CGSC:73004

dnaE1061

CGSC:73007

dnaE1126

CGSC:73010

dnaE74(ts)

temperature sensitive

PMID:3158798 PMID:15028700

CGSC:85748

dnaE786 (araD-polB)(del)::omega

Deletion of araD-polB operon and replaced with omega cassette. Fusion with rapid stop allele dnaE846

Sensitivity to

There is a significant delay in the resumption of DNA replication after exposure to UV radiation at 30 C

PMID:10430924

See figure 4 B.

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Notes

Genetic Interactions

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<protect>

Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW0179

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCTCTGAACCACGTTTCGTACA

Primer 2:CCGTCAAACTCCAGTTCCACCTG

E2B8

Kohara Phage

Genobase

PMID:3038334

6F5

Kohara Phage

Genobase

PMID:3038334

zad-220::Tn10

Linked marker

CAG12025 = CGSC7326[5]

est. P1 cotransduction: 6% [6]

yafC502::Tn10

Linked marker

CAG18436 = CGSC7328[5]

est. P1 cotransduction: 36% [6]
Synonyms:zae-502::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10238

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10238

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000232

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:944877

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0234

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000624

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

DnaE

Synonyms

DNA polymerase III alpha subunit[1], B0184[2][1], SdgC[2][1], PolC[2][1], DnaE[2][1] , ECK0183, JW0179, polC, sdgC, b0184

Product description

DNA polymerase III, α subunit[2][3];

Component of DNA polymerase III, core enzyme[3]; DNA polymerase III, holoenzyme[3]

DNA polymerase III, alpha subunit; suppressor of dnaG-Ts[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

NOT

GO:0008408

3'-5' exonuclease activity

PMID:2997151

IDA: Inferred from Direct Assay

F

complete

GO:0003887

DNA-directed DNA polymerase activity

PMID:2997151

IDA: Inferred from Direct Assay

F

complete

GO:0003676

nucleic acid binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004365

F

Seeded from EcoCyc (v14.0)

complete

GO:0003677

DNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003141

F

Seeded from EcoCyc (v14.0)

complete

GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004013

F

Seeded from EcoCyc (v14.0)

complete

GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016195

F

Seeded from EcoCyc (v14.0)

complete

GO:0003887

DNA-directed DNA polymerase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003141

F

Seeded from EcoCyc (v14.0)

complete

GO:0003887

DNA-directed DNA polymerase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:2.7.7.7

F

Seeded from EcoCyc (v14.0)

complete

GO:0003887

DNA-directed DNA polymerase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0239

F

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004805

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011708

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0086

C

Seeded from EcoCyc (v14.0)

complete

GO:0006260

DNA replication

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003141

P

Seeded from EcoCyc (v14.0)

complete

GO:0006260

DNA replication

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004805

P

Seeded from EcoCyc (v14.0)

complete

GO:0006260

DNA replication

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011708

P

Seeded from EcoCyc (v14.0)

complete

GO:0006260

DNA replication

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0235

P

Seeded from EcoCyc (v14.0)

complete

GO:0008408

3'-5' exonuclease activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004805

F

Seeded from EcoCyc (v14.0)

complete

GO:0008408

3'-5' exonuclease activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011708

F

Seeded from EcoCyc (v14.0)

complete

GO:0016740

transferase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0808

F

Seeded from EcoCyc (v14.0)

complete

GO:0016779

nucleotidyltransferase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0548

F

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

PMID:2997151

IDA: Inferred from Direct Assay

C

complete

GO:0003887

DNA-directed DNA polymerase activity

PMID:2997151

IDA: Inferred from Direct Assay

F

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of DNA polymerase III, core enzyme

could be indirect

Protein

ssb

PMID:15690043

Experiment(s):EBI-883487

Protein

aceE

PMID:15690043

Experiment(s):EBI-883487

Protein

dnaX

PMID:15690043

Experiment(s):EBI-883487, EBI-890781

Protein

holA

PMID:15690043

Experiment(s):EBI-883487, EBI-890781

Protein

holB

PMID:15690043

Experiment(s):EBI-883487, EBI-880223

Protein

holC

PMID:15690043

Experiment(s):EBI-883487, EBI-880166, EBI-885330, EBI-890781

Protein

holD

PMID:15690043

Experiment(s):EBI-883487, EBI-880133, EBI-890781

Protein

rpsB

PMID:15690043

Experiment(s):EBI-883487, EBI-890781

Protein

tufA

PMID:15690043

Experiment(s):EBI-883487, EBI-890781

Protein

pta

PMID:16606699

Experiment(s):EBI-1135853

Protein

helD

PMID:16606699

Experiment(s):EBI-1135853

Protein

asnB

PMID:15690043

Experiment(s):EBI-890781

Protein

dnaK

PMID:15690043

Experiment(s):EBI-890781

Protein

hrpB

PMID:15690043

Experiment(s):EBI-890781

Protein

lpdA

PMID:15690043

Experiment(s):EBI-890781

Protein

nikD

PMID:15690043

Experiment(s):EBI-890781

Protein

rhsD

PMID:15690043

Experiment(s):EBI-890781

Protein

rplA

PMID:15690043

Experiment(s):EBI-890781

Protein

rplC

PMID:15690043

Experiment(s):EBI-890781

Protein

rplD

PMID:15690043

Experiment(s):EBI-890781

Protein

rplL

PMID:15690043

Experiment(s):EBI-890781

Protein

rplM

PMID:15690043

Experiment(s):EBI-890781

Protein

rplU

PMID:15690043

Experiment(s):EBI-890781

Protein

rpsA

PMID:15690043

Experiment(s):EBI-890781

Protein

rpsP

PMID:15690043

Experiment(s):EBI-890781

Protein

tpiA

PMID:15690043

Experiment(s):EBI-890781

Protein

ybdL

PMID:15690043

Experiment(s):EBI-890781

Protein

bcsA

PMID:15690043

Experiment(s):EBI-890781

Protein

rpsA

PMID:19402753

LCMS(ID Probability):99.6

Protein

dnaN

PMID:19402753

MALDI(Z-score):26.949307

Protein

rplU

PMID:19402753

LCMS(ID Probability):99.6

Protein

tpiA

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsP

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplM

PMID:19402753

LCMS(ID Probability):99.6

Protein

tufB

PMID:19402753

MALDI(Z-score):19.758845

Protein

rplA

PMID:19402753

LCMS(ID Probability):99.6

Protein

ssb

PMID:19402753

LCMS(ID Probability):96.3 MALDI(Z-score):30.794950

Protein

holA

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):38.471077

Protein

holC

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):22.027887

Protein

dnaQ

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):36.181251

Protein

holE

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):18.880290

Protein

holB

PMID:19402753

MALDI(Z-score):39.020174

Protein

dnaX

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):28.891532

Protein

holD

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):26.029135

Protein

asnB

PMID:19402753

LCMS(ID Probability):99.0

Protein

rplL

PMID:19402753

LCMS(ID Probability):99.6

Protein

Subunits of DNA polymerase III, holoenzyme

could be indirect


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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

Cytoplasm

Purification

PMID:2997151


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSEPRFVHLR VHSDYSMIDG LAKTAPLVKK AAALGMPALA ITDFTNLCGL VKFYGAGHGA
GIKPIVGADF NVQCDLLGDE LTHLTVLAAN NTGYQNLTLL ISKAYQRGYG AAGPIIDRDW
LIELNEGLIL LSGGRMGDVG RSLLRGNSAL VDECVAFYEE HFPDRYFLEL IRTGRPDEES
YLHAAVELAE ARGLPVVATN DVRFIDSSDF DAHEIRVAIH DGFTLDDPKR PRNYSPQQYM
RSEEEMCELF ADIPEALANT VEIAKRCNVT VRLGEYFLPQ FPTGDMSTED YLVKRAKEGL
EERLAFLFPD EEERLKRRPE YDERLETELQ VINQMGFPGY FLIVMEFIQW SKDNGVPVGP
GRGSGAGSLV AYALKITDLD PLEFDLLFER FLNPERVSMP DFDVDFCMEK RDQVIEHVAD
MYGRDAVSQI ITFGTMAAKA VIRDVGRVLG HPYGFVDRIS KLIPPDPGMT LAKAFEAEPQ
LPEIYEADEE VKALIDMARK LEGVTRNAGK HAGGVVIAPT KITDFAPLYC DEEGKHPVTQ
FDKSDVEYAG LVKFDFLGLR TLTIINWALE MINKRRAKNG EPPLDIAAIP LDDKKSFDML
QRSETTAVFQ LESRGMKDLI KRLQPDCFED MIALVALFRP GPLQSGMVDN FIDRKHGREE
ISYPDVQWQH ESLKPVLEPT YGIILYQEQV MQIAQVLSGY TLGGADMLRR AMGKKKPEEM
AKQRSVFAEG AEKNGINAEL AMKIFDLVEK FAGYGFNKSH SAAYALVSYQ TLWLKAHYPA
EFMAAVMTAD MDNTEKVVGL VDECWRMGLK ILPPDINSGL YHFHVNDDGE IVYGIGAIKG
VGEGPIEAII EARNKGGYFR ELFDLCARTD TKKLNRRVLE KLIMSGAFDR LGPHRAALMN
SLGDALKAAD QHAKAEAIGQ ADMFGVLAEE PEQIEQSYAS CQPWPEQVVL DGERETLGLY
LTGHPINQYL KEIERYVGGV RLKDMHPTER GKVITAAGLV VAARVMVTKR GNRIGICTLD
DRSGRLEVML FTDALDKYQQ LLEKDRILIV SGQVSFDDFS GGLKMTAREV MDIDEAREKY
ARGLAISLTD RQIDDQLLNR LRQSLEPHRS GTIPVHLYYQ RADARARLRF GATWRVSPSD
RLLNDLRGLI GSEQVELEFD
Length

1,160

Mol. Wt

129.908 kDa

pI

5.1 (calculated)

Extinction coefficient

102,110 - 103,610 (calc based on 39 Y, 8 W, and 12 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

7..192

PF02811 PHP domain

PMID:19920124

Domain

994..1073

PF01336 OB-fold nucleic acid binding domain

PMID:19920124

Domain

290..735

PF07733 Bacterial DNA polymerase III alpha subunit

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=dnaE taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128177

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:944877

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000624

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P10443

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10238

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10238

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:944877

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000232

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0234

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

Ecoli K-12

8.149+/-0.096

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.048248133

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 MG1655

328

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

79

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

152

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

yaeT-hlpA-lpxD-fabZ-lpxAB-rnhB-dnaE

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Figure courtesy of RegulonDB

</protect>

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:205106..205146 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

</protect>

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b0184 (EcoliWiki Page)

NCBI GEO profiles for dnaE

microarray

GenExpDB:b0184 (EcoliWiki Page)

Summary of data for dnaE from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to dnaE Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10238

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0234

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0184

EcoGene

EcoGene:EG10238

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000232

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000624

Escherichia coli str. K-12 substr. MG1655

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Evolution

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Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Shigella flexneri

DNAE

From SHIGELLACYC

E. coli O157

DNAE

From ECOO157CYC

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Notes

Families

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Database Accession Notes

Pfam (EcoliWiki Page)

PF02811 PHP domain

Pfam (EcoliWiki Page)

PF01336 OB-fold nucleic acid binding domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:89550

Pfam (EcoliWiki Page)

PF07733 Bacterial DNA polymerase III alpha subunit

EcoCyc

EcoCyc:EG10238

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10238

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000232

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0234

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000624

Escherichia coli str. K-12 substr. MG1655

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References

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  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

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