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On One Page

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Gene |

Product(s) |

Expression|

Evolution |

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Standard Name	cedA
Gene Synonym(s)	ECK1729, b1731, JW1720, ydjP^[1], ydjP
Product Desc.	cell division modulator^[2]^[3] DNA-binding protein that modulates cell division; relieves inhibition of cell division after over-replication of chromosome in dnaAcos mutants^[4]
Product Synonyms(s)	cell division modulator^[1], B1731^[2]^[1], YdjP^[2]^[1], CedA^[2]^[1] , ECK1729, JW1720, ydjP, b1731
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): cedA^[2]
Regulation/Activity
Quick Links
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Notes

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Second ATG is chosen because of S.t. alignment and RBS. N-terminus of 87 aa protein is unstructured by NMR, consistent with an incorrect N-terminus.^[4]

Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name	cedA
Mnemonic	CEll Division
Synonyms	ECK1729, b1731, JW1720, ydjP^[1], ydjP
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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain	Map location	Genome coordinates	Genome browsers	Sequence links
MG1655	39.04 minutes	MG1655: 1811708..1811445 <gbrowseImage> name=NC_000913:1811445..1811708 source=MG1655 preset=GeneLocation </gbrowseImage>	EcoCyc GBrowse(MG1655)	FASTA Dump EcoCyc Sequence Dump
REL606		NC_012967: 1790949..1790686 <gbrowseImage> name=NC_012967:1790686..1790949 source=REL606 preset=GeneLocation </gbrowseImage>	GBrowse (REL606)	FASTA Dump
BW2952		NC_012759: 1703504..1703746 <gbrowseImage> name=NC_012759:1703504..1703746 source=BW2952 preset=GeneLocation </gbrowseImage>	GBrowse (BW2952)	FASTA Dump
W3110		W3110: 1815398..1815135 <gbrowseImage> name=NC_007779:1815135..1815398 source=W3110 preset=GeneLocation </gbrowseImage>	GBrowse(W3110)	FASTA Dump
DH10B		DH10B: 1902279..1902016 <gbrowseImage> name=NC_010473:1902016..1902279 source=DH10B preset=GeneLocation </gbrowseImage>	GBrowse(DH10B)	FASTA Dump
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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type	Strain	Genomic Location	Evidence	Reference	Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele	Nt change(s)	AA change(s)	Reference	Availability
ΔcedA (Keio:JW1720)	deletion	deletion	PMID:16738554	Shigen CGSC9452^[5]
ΔcedA730::kan			PMID:16738554	CGSC:100274
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Notes

Genetic Interactions

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Interactor	Interaction	Allele	Score(s)	Reference(s)	Accessions	Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource	Resource Type	Source	Notes/Reference
JW1720	Plasmid clone	Shigen	PMID:16769691 Status:Clone OK Primer 1:GCCCGTTTAGTGAAGCCAGTAAT Primer 2:CCtTCAGTCACTTCCCCTTCCTG
8A4	Kohara Phage	Genobase	PMID:3038334
19B6	Kohara Phage	Genobase	PMID:3038334
zdi-925::Tn10	Linked marker	CAG12151 = CGSC7385^[5]	est. P1 cotransduction: 25% ^[6] Synonyms:zdh-925::Tn10
zdj-276::Tn10	Linked marker	CAG18464 = CGSC7387^[5]	est. P1 cotransduction: 46% ^[6] Synonyms:zdi-276::Tn10
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:G6936	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG13992	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120003524	Escherichia coli str. K-12 substr. MG1655
NCBI (EcoliWiki Page)	GeneID:946235	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB3748	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0005776	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name	CedA
Synonyms	cell division modulator^[1], B1731^[2]^[1], YdjP^[2]^[1], CedA^[2]^[1] , ECK1729, JW1720, ydjP, b1731
Product description	cell division modulator^[2]^[3] DNA-binding protein that modulates cell division; relieves inhibition of cell division after over-replication of chromosome in dnaAcos mutants^[4]
EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0003677	DNA binding	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_01580	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003677	DNA binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR019666	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003677	DNA binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0238	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005515	protein binding	PMID:16606699	IPI: Inferred from Physical Interaction	UniProtKB:Q47149	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005515	protein binding	PMID:16606699	IPI: Inferred from Physical Interaction	UniProtKB:Q47685	F	Seeded from EcoCyc (v14.0)	complete
	GO:0007049	cell cycle	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0131	P	Seeded from EcoCyc (v14.0)	complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	References	Evidence
Protein	aceF	PMID:15690043	Experiment(s):EBI-885601, EBI-892208
Protein	rpoA	PMID:15690043	Experiment(s):EBI-885601, EBI-892208
Protein	rpoB	PMID:15690043	Experiment(s):EBI-885601, EBI-892208
Protein	rpoC	PMID:15690043	Experiment(s):EBI-885601, EBI-892208
Protein	rpoD	PMID:15690043	Experiment(s):EBI-885601, EBI-892208
Protein	rpoZ	PMID:15690043	Experiment(s):EBI-885601, EBI-879161, EBI-892208
Protein	aceE	PMID:15690043	Experiment(s):EBI-892208
Protein	hns	PMID:15690043	Experiment(s):EBI-892208
Protein	rplC	PMID:15690043	Experiment(s):EBI-892208
Protein	tufA	PMID:15690043	Experiment(s):EBI-892208
Protein	rpsO	PMID:15690043	Experiment(s):EBI-892208
Protein	rpsO	PMID:19402753	LCMS(ID Probability):99.6
Protein	hns	PMID:19402753	LCMS(ID Probability):99.6
Protein	metJ	PMID:19402753	LCMS(ID Probability):98.2
Protein	rpoD	PMID:19402753	LCMS(ID Probability):99.6 MALDI(Z-score):28.431033
Protein	rpoZ	PMID:19402753	LCMS(ID Probability):99.6 MALDI(Z-score):27.567071
Protein	rpoC	PMID:19402753	LCMS(ID Probability):99.6 MALDI(Z-score):10.631566
Protein	rpoB	PMID:19402753	LCMS(ID Probability):99.6 MALDI(Z-score):10.785281
Protein	rpoA	PMID:19402753	LCMS(ID Probability):99.6 MALDI(Z-score):39.312454
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MRLVKPVMKK PLRQQNRQII SYVPRTEPAP PEHAIKMDSF RDVWMLRGKY VAFVLMGESF LRSPAFTVPE SAQRWANQIR QEGEVTE
Length	87
Mol. Wt	10.2 kDa
pI	12.3 (calculated)
Extinction coefficient	13,980 (calc based on 2 Y, 2 W, and 0 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
Domain	1..80	PF10729 Cell division activator CedA		PMID:19920124
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=cedA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:145698276	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:946235	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0005776	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P0AE60	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:G6936	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG13992	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:946235	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120003524	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB3748	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Cellular Levels

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See Help:Cellular levels

Molecule	Organism or Strain	Value	Units	Experimental Conditions	Assay used	Notes	Reference(s)
Protein	E. coli K-12 MG1655	663	molecules/cell/generation	Medium: MOPS Complete Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
Protein	E. coli K-12 MG1655	139	molecules/cell/generation	Medium: MOPS Minimal Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
Protein	E. coli K-12 MG1655	184^a	molecules/cell/generation	Medium: MOPS Complete without Methionine Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling	Low confidence in the sequencing data set.	PMID: 24766808
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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
cedA
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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:1811688..1811728 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name	Mutation	Phenotype	Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type	Reference	Notes
microarray	GEO Profiles:b1731 (EcoliWiki Page)	NCBI GEO profiles for cedA
microarray	GenExpDB:b1731 (EcoliWiki Page)	Summary of data for cedA from multiple microarray studies
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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name	Resource Type	Description	Source	Notes
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Notes

Accessions Related to cedA Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:G6936	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB3748	Escherichia coli str. K-12 substr. MG1655
EcoliGenExpDB (EcoliWiki Page)	EcoliGenExpDB:b1731
EcoGene	EcoGene:EG13992	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120003524	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0005776	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism	Homologs (Statistics)	Comments
Shigella flexneri	S1614	From SHIGELLACYC
E. coli O157	Z2760	From ECOO157CYC
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Notes

Families

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<protect> See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Database	Accession	Notes
Pfam (EcoliWiki Page)	PF10729 Cell division activator CedA
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 ^1.7 ^1.8 ^1.9 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 ^2.6 ^2.7 ^2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 ^4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ ^5.0 ^5.1 ^5.2 CGSC: The Coli Genetics Stock Center
↑ ^6.0 ^6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

cedA:On One Page

Quickview

Notes

Gene

Nomenclature

Notes

Location(s) and DNA Sequence

Notes

Sequence Features

Notes

Alleles and Phenotypes

Notes

Genetic Interactions

Notes

Genetic Resources

Notes

Accessions in Other Databases

Notes

Links

Product(s)

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

Expression

Overview

Cellular Levels

Notes

Transcription and Transcriptional Regulation

Notes

Translation and Regulation of Translation

Notes

Turnover and Regulation of Turnover

Notes

Experimental

Notes

Accessions Related to cedA Expression

Notes

Links

Evolution

Homologs in Other Organisms

Notes

Families

Notes

Links

References

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