cedA:Gene Product(s)

From EcoliWiki
Jump to: navigation, search

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

CedA

Synonyms

cell division modulator[1], B1731[2][1], YdjP[2][1], CedA[2][1] , ECK1729, JW1720, ydjP, b1731

Product description

cell division modulator[2][3]

DNA-binding protein that modulates cell division; relieves inhibition of cell division after over-replication of chromosome in dnaAcos mutants[4]

EC number (for enzymes)


edit table

<protect></protect>

Notes

Function

[back to top]


<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0003677

DNA binding

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01580

F

Seeded from EcoCyc (v14.0)

complete

GO:0003677

DNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR019666

F

Seeded from EcoCyc (v14.0)

complete

GO:0003677

DNA binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0238

F

Seeded from EcoCyc (v14.0)

complete

GO:0005515

protein binding

PMID:16606699[5]

IPI: Inferred from Physical Interaction

UniProtKB:Q47149

F

Seeded from EcoCyc (v14.0)

complete

GO:0005515

protein binding

PMID:16606699[5]

IPI: Inferred from Physical Interaction

UniProtKB:Q47685

F

Seeded from EcoCyc (v14.0)

complete

GO:0007049

cell cycle

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0131

P

Seeded from EcoCyc (v14.0)

complete

edit table

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

aceF

PMID:15690043[6]

Experiment(s):EBI-885601, EBI-892208

Protein

rpoA

PMID:15690043[6]

Experiment(s):EBI-885601, EBI-892208

Protein

rpoB

PMID:15690043[6]

Experiment(s):EBI-885601, EBI-892208

Protein

rpoC

PMID:15690043[6]

Experiment(s):EBI-885601, EBI-892208

Protein

rpoD

PMID:15690043[6]

Experiment(s):EBI-885601, EBI-892208

Protein

rpoZ

PMID:15690043[6]

Experiment(s):EBI-885601, EBI-879161, EBI-892208

Protein

aceE

PMID:15690043[6]

Experiment(s):EBI-892208

Protein

hns

PMID:15690043[6]

Experiment(s):EBI-892208

Protein

rplC

PMID:15690043[6]

Experiment(s):EBI-892208

Protein

tufA

PMID:15690043[6]

Experiment(s):EBI-892208

Protein

rpsO

PMID:15690043[6]

Experiment(s):EBI-892208

Protein

rpsO

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

hns

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

metJ

PMID:19402753[7]

LCMS(ID Probability):98.2

Protein

rpoD

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):28.431033

Protein

rpoZ

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):27.567071

Protein

rpoC

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):10.631566

Protein

rpoB

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):10.785281

Protein

rpoA

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):39.312454

edit table

</protect>

Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
edit table

<protect></protect>

Notes

Structure and Physical Properties

[back to top]


<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MRLVKPVMKK PLRQQNRQII SYVPRTEPAP PEHAIKMDSF RDVWMLRGKY VAFVLMGESF
LRSPAFTVPE SAQRWANQIR QEGEVTE
Length

87

Mol. Wt

10.2 kDa

pI

12.3 (calculated)

Extinction coefficient

13,980 (calc based on 2 Y, 2 W, and 0 C residues)

edit table


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

1..80

PF10729 Cell division activator CedA

PMID:19920124[8]

edit table

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=cedA taxon=562,83333 </beststructure>

Models

View models at:

edit table
</protect>

Structure figures

<protect>

</protect>

Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table

<protect></protect>

Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:145698276

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946235

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005776

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0AE60

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6936

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13992

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946235

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003524

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3748

Escherichia coli str. K-12 substr. MG1655

edit table

<protect></protect>

Notes

Links

[back to top]




References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ 6.00 6.01 6.02 6.03 6.04 6.05 6.06 6.07 6.08 6.09 6.10 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  7. ↑ 7.0 7.1 7.2 7.3 7.4 7.5 7.6 7.7 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  8. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=cedA:Gene_Product(s)&oldid=1493659"