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On One Page

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Gene |

Product(s) |

Expression|

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Standard Name	asmA
Gene Synonym(s)	ECK2058, b2064, JW2049, yegA^[1], yegA
Product Desc.	predicted assembly protein AsmA^[2]^[3] Suppressor of ompF assembly mutants, function unknown; inner membrane protein may be more generally involved in OM protein assembly; required for swarming phenotype^[4]
Product Synonyms(s)	predicted assembly protein^[1], B2064^[2]^[1], YegA^[2]^[1], AsmA^[2]^[1] , ECK2058, JW2049, yegA, b2064
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): asmA^[2]
Regulation/Activity
Quick Links
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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name	asmA
Mnemonic	Assembly suppressor mutant
Synonyms	ECK2058, b2064, JW2049, yegA^[1], yegA
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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain	Map location	Genome coordinates	Genome browsers	Sequence links
MG1655	46.08 minutes	MG1655: 2139636..2137783 <gbrowseImage> name=NC_000913:2137783..2139636 source=MG1655 preset=GeneLocation </gbrowseImage>	EcoCyc GBrowse(MG1655)	FASTA Dump EcoCyc Sequence Dump
REL606		NC_012967: 2074818..2072965 <gbrowseImage> name=NC_012967:2072965..2074818 source=REL606 preset=GeneLocation </gbrowseImage>	GBrowse (REL606)	FASTA Dump
BW2952		NC_012759: 2030266..2032119 <gbrowseImage> name=NC_012759:2030266..2032119 source=BW2952 preset=GeneLocation </gbrowseImage>	GBrowse (BW2952)	FASTA Dump
W3110		W3110: 2143749..2141896 <gbrowseImage> name=NC_007779:2141896..2143749 source=W3110 preset=GeneLocation </gbrowseImage>	GBrowse(W3110)	FASTA Dump
DH10B		DH10B: 2230644..2228791 <gbrowseImage> name=NC_010473:2228791..2230644 source=DH10B preset=GeneLocation </gbrowseImage>	GBrowse(DH10B)	FASTA Dump
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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type	Strain	Genomic Location	Evidence	Reference	Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele	Nt change(s)	AA change(s)	Reference	Availability	Comments
ΔasmA (Keio:JW2049)	deletion	deletion	PMID:16738554	Shigen CGSC9683^[5]
asmA::Tn5KAN-I-SceI (FB20602)	Insertion at nt 1238 in Minus orientation		PMID:15262929	E. coli Genome Project:FB20602	contains pKD46
ΔasmA762::kan			PMID:16738554	CGSC:100102
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Notes

Genetic Interactions

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Interactor	Interaction	Allele	Score(s)	Reference(s)	Accessions	Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource	Resource Type	Source	Notes/Reference
JW2049	Plasmid clone	Shigen	PMID:16769691 Status:Clone OK Primer 1:GCCAGACGATTTCTGACGACGCT Primer 2:CCCATCTTCTCCAGCAACTTCTT
2E1	Kohara Phage	Genobase	PMID:3038334
3G4	Kohara Phage	Genobase	PMID:3038334
zef-3129::Tn10	Linked marker	CAG12099 = CGSC7397^[5]	est. P1 cotransduction: 7% ^[6] Synonyms:zee-3129::Tn10
zbd-3104::Tn10	Linked marker	CAG12021 = CGSC7344^[5]	est. P1 cotransduction: 20% ^[6] Synonyms:zbc-3105::Tn10, zbd-3105::Tn10
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:EG11361	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG11361	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120001330	Escherichia coli str. K-12 substr. MG1655
NCBI (EcoliWiki Page)	GeneID:946582	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB1336	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0006833	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name	AsmA
Synonyms	predicted assembly protein^[1], B2064^[2]^[1], YegA^[2]^[1], AsmA^[2]^[1] , ECK2058, JW2049, yegA, b2064
Product description	predicted assembly protein AsmA^[2]^[3] Suppressor of ompF assembly mutants, function unknown; inner membrane protein may be more generally involved in OM protein assembly; required for swarming phenotype^[4]
EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0042597	periplasmic space	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0574	C	Seeded from EcoCyc (v14.0)	complete
	GO:0042597	periplasmic space	GO_REF:0000023	IEA: Inferred from Electronic Annotation	SP_SL:SL-0200	C	Seeded from EcoCyc (v14.0)	complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	References	Evidence
Protein	speG	PMID:16606699	Experiment(s):EBI-1141819
Protein	ppk	PMID:16606699	Experiment(s):EBI-1141819
Protein	pyrG	PMID:16606699	Experiment(s):EBI-1141819
Protein	thrS	PMID:16606699	Experiment(s):EBI-1141819
Protein	glgB	PMID:16606699	Experiment(s):EBI-1141819
Protein	nuoG	PMID:16606699	Experiment(s):EBI-1141819
Protein	aegA	PMID:16606699	Experiment(s):EBI-1141819
Protein	yhgE	PMID:16606699	Experiment(s):EBI-1141819
Protein	elaB	PMID:19402753	LCMS(ID Probability):99.6
Protein	wbbK	PMID:19402753	LCMS(ID Probability):99.6
Protein	yqjD	PMID:19402753	LCMS(ID Probability):99.6
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
plasma membrane
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MRRFLTTLMI LLVVLVAGLS ALVLLVNPND FRDYMVKQVA ARSGYQLQLD GPLRWHVWPQ LSILSGRMSL TAQGASQPLV RADNMRLDVA LLPLLSHQLS VKQVMLKGAV IQLTPQTEAV RSEDAPVAPR DNTLPDLSDD RGWSFDISSL KVADSVLVFQ HEDDEQVTIR NIRLQMEQDP QHRGSFEFSG RVNRDQRDLT ISLNGTVDAS DYPHDLTAAI EQINWQLQGA DLPKQGIQGQ GSFQAQWQES HKRLSFNQIS LTANDSTLSG QAQVTLTEKP EWQLRLQFPQ LNLDNLIPLN ETANGENGAA QQGQSQSTLP RPVISSRIDE PAYQGLQGFT ADILLQASNV RWRGMNFTDV ATQMTNKSGL LEITQLQGKL NGGQVSLPGT LDATSINPRI NFQPRLENVE IGTILKAFNY PISLTGKMSL AGDFSGADID ADAFRHNWQG QAHVEMTDTR MEGMNFQQMI QQAVERNGGD VKAAENFDNV TRLDRFTTDL TLKDGVVTLN DMQGQSPVLA LTGEGMLNLA DQTCDTQFDI RVVGGWNGES KLIDFLKETP VPLRVYGNWQ QLNYSLQVDQ LLRKHLQDEA KRRLNDWAER NKDSRNGKDV KKLLEKM
Length	617
Mol. Wt	68.963 kDa
pI	5.2 (calculated)
Extinction coefficient	70,930 - 71,055 (calc based on 7 Y, 11 W, and 1 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
motif	1-22	UniProt Manual:Signal Peptides	UniProt:P28249
Domain	1..242	PF05170 AsmA family		PMID:19920124
Domain	238..512	PF05170 AsmA family		PMID:19920124
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=asmA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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Resource type	Source	Notes/Reference
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Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:16130004	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:946582	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0006833	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P28249	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:EG11361	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG11361	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:946582	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120001330	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB1336	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Cellular Levels

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See Help:Cellular levels

Molecule	Organism or Strain	Value	Units	Experimental Conditions	Assay used	Notes	Reference(s)
Protein	Ecoli K-12	1.707+/-0.05	Molecules/cell	Medium: Temperature (°C): Doubling time (min): Growth Rate(min): * Growth phase: other: *		Single Molecule Fluorescence	PMID:20671182
mRNA	Ecoli K-12	0.047220723	Molecules/cell	Medium: Temperature (°C): Doubling time (min): Growth Rate(min): * Growth phase: other: *		by RNA_Seq	PMID:20671182
Protein	E. coli K-12 MG1655	138	molecules/cell/generation	Medium: MOPS Complete Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
Protein	E. coli K-12 MG1655	75	molecules/cell/generation	Medium: MOPS Minimal Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
Protein	E. coli K-12 MG1655	58	molecules/cell/generation	Medium: MOPS Complete without Methionine Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
asmA
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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:2139616..2139656 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name	Mutation	Phenotype	Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type	Reference	Notes
microarray	GEO Profiles:b2064 (EcoliWiki Page)	NCBI GEO profiles for asmA
microarray	GenExpDB:b2064 (EcoliWiki Page)	Summary of data for asmA from multiple microarray studies
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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name	Resource Type	Description	Source	Notes
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Notes

Accessions Related to asmA Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:EG11361	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB1336	Escherichia coli str. K-12 substr. MG1655
EcoliGenExpDB (EcoliWiki Page)	EcoliGenExpDB:b2064
EcoGene	EcoGene:EG11361	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120001330	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0006833	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism	Homologs (Statistics)	Comments
Anopheles gambiae	ENSANGP00000026447 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Shigella flexneri	ASMA	From SHIGELLACYC
E. coli O157	ASMA	From ECOO157CYC
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Do-It-Yourself Web Tools

Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
Pfam (EcoliWiki Page)	PF05170 AsmA family
Pfam (EcoliWiki Page)	PF05170 AsmA family
EcoCyc	EcoCyc:EG11361	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG11361	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120001330	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB1336	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0006833	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 ^1.7 ^1.8 ^1.9 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 ^2.6 ^2.7 ^2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ ^5.0 ^5.1 ^5.2 CGSC: The Coli Genetics Stock Center
↑ ^6.0 ^6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

asmA:On One Page

Quickview

Notes

Gene

Nomenclature

Notes

Location(s) and DNA Sequence

Notes

Sequence Features

Notes

Alleles and Phenotypes

Notes

Genetic Interactions

Notes

Genetic Resources

Notes

Accessions in Other Databases

Notes

Links

Product(s)

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

Expression

Overview

Cellular Levels

Notes

Transcription and Transcriptional Regulation

Notes

Translation and Regulation of Translation

Notes

Turnover and Regulation of Turnover

Notes

Experimental

Notes

Accessions Related to asmA Expression

Notes

Links

Evolution

Homologs in Other Organisms

Do-It-Yourself Web Tools

Notes

Families

Notes

Links

References

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