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On One Page

Quickview |

Gene |

Product(s) |

Expression|

Evolution |

References |

Quickview

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Standard Name	aslA
Gene Synonym(s)	ECK3794, b3801, JW3773, gppB, atsA, G616^[1]^[2]
Product Desc.	Suppresses gpp mutants; putative arylsulfatase^[3]
Product Synonyms(s)	acrylsulfatase-like enzyme^[1], B3801^[2]^[1], GppB^[2]^[1], AtsA^[2]^[1], AslA^[2]^[1] , atsA, ECK3794, gppB, JW3773, b3801
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): aslA^[2]
Regulation/Activity
Quick Links
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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name	aslA
Mnemonic	Arylsulfatase-like
Synonyms	ECK3794, b3801, JW3773, gppB, atsA, G616^[1]^[2]
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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain	Map location	Genome coordinates	Genome browsers	Sequence links
MG1655	85.83 minutes	MG1655: 3984030..3982375 <gbrowseImage> name=NC_000913:3982375..3984030 source=MG1655 preset=GeneLocation </gbrowseImage>	EcoCyc GBrowse(MG1655)	FASTA Dump EcoCyc Sequence Dump
REL606		NC_012967: 3947806..3946151 <gbrowseImage> name=NC_012967:3946151..3947806 source=REL606 preset=GeneLocation </gbrowseImage>	GBrowse (REL606)	FASTA Dump
BW2952		NC_012759: 3872044..3873699 <gbrowseImage> name=NC_012759:3872044..3873699 source=BW2952 preset=GeneLocation </gbrowseImage>	GBrowse (BW2952)	FASTA Dump
W3110		W3110: 3650674..3652329 <gbrowseImage> name=NC_007779:3650674..3652329 source=W3110 preset=GeneLocation </gbrowseImage>	GBrowse(W3110)	FASTA Dump
DH10B		DH10B: 4082950..4081295 <gbrowseImage> name=NC_010473:4081295..4082950 source=DH10B preset=GeneLocation </gbrowseImage>	GBrowse(DH10B)	FASTA Dump
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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type	Strain	Genomic Location	Evidence	Reference	Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele	Nt change(s)	AA change(s)	Reference	Availability
ΔaslA (Keio:JW3773)	deletion	deletion	PMID:16738554	Shigen CGSC10746^[4]
ΔaslA748::kan			PMID:16738554	CGSC:100100
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Notes

Genetic Interactions

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Interactor	Interaction	Allele	Score(s)	Reference(s)	Accessions	Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource	Resource Type	Source	Notes/Reference
JW3773	Plasmid clone	Shigen	PMID:16769691 Status:Clone OK Primer 1:GCCGAATTTTCGTTTTCACCCAA Primer 2:CCGTCAGATTTAATCTGCGCGCG
12G1	Kohara Phage	Genobase	PMID:3038334
10F4	Kohara Phage	Genobase	PMID:3038334
ilvD500::Tn10	Linked marker	CAG18431 = CGSC7462^[4]	est. P1 cotransduction: 32% ^[5] Synonyms:ilv500::Tn10
metEo-3079::Tn10	Linked marker	CAG18491 = CGSC7464^[4]	est. P1 cotransduction: 37% ^[5] Synonyms:metE3079::Tn10 nnnThe Tn10 in CAG13491 is inserted in the metE regulatory region, but causes a Met- phenotype.
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:EG10089	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10089	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000085	Escherichia coli str. K-12 substr. MG1655
NCBI (EcoliWiki Page)	GeneID:949015	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0087	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0012411	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name	AslA
Synonyms	acrylsulfatase-like enzyme^[1], B3801^[2]^[1], GppB^[2]^[1], AtsA^[2]^[1], AslA^[2]^[1] , atsA, ECK3794, gppB, JW3773, b3801
Product description	Suppresses gpp mutants; putative arylsulfatase^[3]
EC number (for enzymes)	3.1.6.1^[1]
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0030288	outer membrane-bounded periplasmic space				C	Seeded from Riley et al 2006 ^[1].	Missing: evidence, reference
	GO:0003824	catalytic activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR017849	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003824	catalytic activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR017850	F	Seeded from EcoCyc (v14.0)	complete
	GO:0004065	arylsulfatase activity	GOA:spec GO_REF:0000003	IEA: Inferred from Electronic Annotation	EC:3.1.6.1	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005509	calcium ion binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0106	F	Seeded from EcoCyc (v14.0)	complete
	GO:0008152	metabolic process	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000917	P	Seeded from EcoCyc (v14.0)	complete
	GO:0008152	metabolic process	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR017849	P	Seeded from EcoCyc (v14.0)	complete
	GO:0008152	metabolic process	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR017850	P	Seeded from EcoCyc (v14.0)	complete
	GO:0008484	sulfuric ester hydrolase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000917	F	Seeded from EcoCyc (v14.0)	complete
	GO:0016787	hydrolase activity	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0378	F	Seeded from EcoCyc (v14.0)	complete
	GO:0042597	periplasmic space	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0574	C	Seeded from EcoCyc (v14.0)	complete
	GO:0042597	periplasmic space	GO_REF:0000023	IEA: Inferred from Electronic Annotation	SP_SL:SL-0200	C	Seeded from EcoCyc (v14.0)	complete
	GO:0046872	metal ion binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0479	F	Seeded from EcoCyc (v14.0)	complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MEFSFSPKRL VVAVAAALPL MASAADTPST ATARKGFAGY DHPNQYLVKP ATTIADNMMP VMQHPAQDKE TQQKLAELEK KTGKKPNVVV FLLDDVGWMD VGFNGGGVAV GNPTPDIDAV ASQGLILTSA YSQPSSSPTR ATILTGQYSI HHGILMPPMY GQPGGLQGLT TLPQLLHDQG YVTQAIGKWH MGENKESQPQ NVGFDDFRGF NSVSDMYTEW RDVHVNPEVA LSPDRSEYIK QLPFSKDDVH AVRGGEQQAI ADITPKYMED LDQRWMDYGV KFLDKMAKSD KPFFLYYGTR GCHFDNYPNA KYAGSSPART SYGDCMVEMN DVFANLYKTL EKNGQLDNTL IVFTSDNGPE AEVPPHGRTP FRGAKGSTWE GGVRVPTFVY WKGMIQPRKS DGIVDLADLF PTALDLAGHP GAKVANLVPK TTFIDGVDQT SFFLGTNGQS NRKAEHYFLN GKLAAVRMDE FKYHVLIQQP YAYTQSGYQG GFTGTVMQTA GSSVFNLYTD PQESDSIGVR HIPMGVPLQT EMHAYMEILK KYPPRAQIKS D
Length	551
Mol. Wt	60.717 kDa
pI	6.4 (calculated)
Extinction coefficient	70,250 - 70,500 (calc based on 25 Y, 6 W, and 2 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
motif	1-24	UniProt Manual:Signal Peptides	UniProt:P25549
Domain	86..516	PF00884 Sulfatase		PMID:19920124
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=aslA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:16131653	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:949015	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0012411	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P25549	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:EG10089	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10089	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:949015	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000085	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0087	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Cellular Levels

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See Help:Cellular levels

Molecule	Organism or Strain	Value	Units	Experimental Conditions	Assay used	Notes	Reference(s)
Protein	E. coli K-12 MG1655	7^a	molecules/cell/generation	Medium: MOPS Complete Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling	Low confidence in the sequencing data set.	PMID: 24766808
Protein	E. coli K-12 MG1655	5	molecules/cell/generation	Medium: MOPS Minimal Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
Protein	E. coli K-12 MG1655	0^a	molecules/cell/generation	Medium: MOPS Complete without Methionine Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling	Low confidence in the sequencing data set.	PMID: 24766808
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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
aslA
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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:3984010..3984050 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name	Mutation	Phenotype	Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type	Reference	Notes
microarray	GEO Profiles:b3801 (EcoliWiki Page)	NCBI GEO profiles for aslA
microarray	GenExpDB:b3801 (EcoliWiki Page)	Summary of data for aslA from multiple microarray studies
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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name	Resource Type	Description	Source	Notes
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Notes

Accessions Related to aslA Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:EG10089	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0087	Escherichia coli str. K-12 substr. MG1655
EcoliGenExpDB (EcoliWiki Page)	EcoliGenExpDB:b3801
EcoGene	EcoGene:EG10089	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000085	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0012411	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism	Homologs (Statistics)	Comments
Anopheles gambiae	ENSANGP00000029647 (score: 1.000; bootstrap: 93%) ENSANGP00000018435 (score: 0.283)	From Inparanoid:20070104
Apis mellifera	ENSAPMP00000021721 (score: 1.000; bootstrap: 100%) ENSAPMP00000005667 (score: 0.388) ENSAPMP00000030595 (score: 0.257)	From Inparanoid:20070104
Bos taurus	ENSBTAP00000006001 (score: 1.000; bootstrap: 87%) ENSBTAP00000021364 (score: 0.141) ENSBTAP00000014073 (score: 0.136) ENSBTAP00000004773 (score: 0.120) ENSBTAP00000019877 (score: 0.062)	From Inparanoid:20070104
Caenorhabditis briggsae	WBGene00036662 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Canis familiaris	ENSCAFP00000029422 (score: 1.000; bootstrap: 74%) ENSCAFP00000016615 (score: 0.131) ENSCAFP00000016405 (score: 0.123) ENSCAFP00000000803 (score: 0.119) ENSCAFP00000016319 (score: 0.115) ENSCAFP00000016437 (score: 0.102)	From Inparanoid:20070104
Ciona intestinalis	ENSCINP00000002986 (score: 1.000; bootstrap: 77%) ENSCINP00000001919 (score: 0.080) ENSCINP00000006879 (score: 0.057)	From Inparanoid:20070104
Danio rerio	ZDB-GENE-050320-118 (score: 1.000; bootstrap: 100%) ZDB-CDNA-050320-118 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Drosophila melanogaster	FBgn0033763 (score: 1.000; bootstrap: 88%)	From Inparanoid:20070104
Drosophila pseudoobscura	GA21235-PA (score: 1.000; bootstrap: 91%)	From Inparanoid:20070104
Gallus gallus	ENSGALP00000010135 (score: 1.000; bootstrap: 79%) ENSGALP00000015844 (score: 0.154) ENSGALP00000029641 (score: 0.125) ENSGALP00000026779 (score: 0.118) ENSGALP00000026807 (score: 0.109) ENSGALP00000006654 (score: 0.061)	From Inparanoid:20070104
Homo sapiens	ENSP00000217961 (score: 1.000; bootstrap: 70%) ENSP00000216124 (score: 1.000; bootstrap: 73%) ENSP00000044768 (score: 0.402) ENSP00000350900 (score: 0.384) ENSP00000352319 (score: 0.381) ENSP00000268695 (score: 0.124) ENSP00000347310 (score: 0.122)	From Inparanoid:20070104
Macaca mulatta	ENSMMUP00000021382 (score: 1.000; bootstrap: 74%) ENSMMUP00000022876 (score: 0.128) ENSMMUP00000006609 (score: 0.099) ENSMMUP00000016319 (score: 0.093) ENSMMUP00000009574 (score: 0.082) ENSMMUP00000000592 (score: 0.076)	From Inparanoid:20070104
Monodelphis domestica	ENSMODP00000007525 (score: 1.000; bootstrap: 81%) ENSMODP00000005427 (score: 0.129) ENSMODP00000021837 (score: 0.122) ENSMODP00000000051 (score: 0.104) ENSMODP00000000046 (score: 0.095) ENSMODP00000000036 (score: 0.062)	From Inparanoid:20070104
Mus musculus	MGI:1355303 (score: 1.000; bootstrap: 97%) MGI:88077 (score: 0.105) MGI:1921258 (score: 0.093)	From Inparanoid:20070104
Pan troglodytes	ENSPTRP00000014435 (score: 1.000; bootstrap: 61%) ENSPTRP00000016267 (score: 0.099)	From Inparanoid:20070104
Rattus norvegicus	ENSRNOP00000017782 (score: 1.000; bootstrap: 71%) ENSRNOP00000005257 (score: 1.000; bootstrap: 72%) ENSRNOP00000042484 (score: 0.134) ENSRNOP00000019528 (score: 0.116) ENSRNOP00000035783 (score: 0.098)	From Inparanoid:20070104
Schizosaccharomyces pombe	SPBPB10D82c (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Takifugu rubripes	NEWSINFRUP00000144940 (score: 1.000; bootstrap: 90%) NEWSINFRUP00000133718 (score: 0.094) NEWSINFRUP00000166470 (score: 0.056)	From Inparanoid:20070104
Tetraodon nigroviridis	GSTENP00033317001 (score: 1.000; bootstrap: 91%) GSTENP00030497001 (score: 0.083) GSTENP00017886001 (score: 0.081)	From Inparanoid:20070104
Xenopus tropicalis	ENSXETP00000034248 (score: 1.000; bootstrap: 79%) ENSXETP00000030741 (score: 0.754) ENSXETP00000024579 (score: 0.118) ENSXETP00000010930 (score: 0.087) ENSXETP00000017914 (score: 0.065) ENSXETP00000013665 (score: 0.064)	From Inparanoid:20070104
E. coli O157	ASLA	From ECOO157CYC
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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
Pfam (EcoliWiki Page)	PF00884 Sulfatase
Superfamily (EcoliWiki Page)	SUPERFAMILY:53649
EcoCyc	EcoCyc:EG10089	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10089	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000085	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0087	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0012411	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.00 ^1.01 ^1.02 ^1.03 ^1.04 ^1.05 ^1.06 ^1.07 ^1.08 ^1.09 ^1.10 ^1.11 ^1.12 ^1.13 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.00 ^2.01 ^2.02 ^2.03 ^2.04 ^2.05 ^2.06 ^2.07 ^2.08 ^2.09 ^2.10 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ ^4.0 ^4.1 ^4.2 CGSC: The Coli Genetics Stock Center
↑ ^5.0 ^5.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

aslA:On One Page

Quickview

Notes

Gene

Nomenclature

Notes

Location(s) and DNA Sequence

Notes

Sequence Features

Notes

Alleles and Phenotypes

Notes

Genetic Interactions

Notes

Genetic Resources

Notes

Accessions in Other Databases

Notes

Links

Product(s)

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

Expression

Overview

Cellular Levels

Notes

Transcription and Transcriptional Regulation

Notes

Translation and Regulation of Translation

Notes

Turnover and Regulation of Turnover

Notes

Experimental

Notes

Accessions Related to aslA Expression

Notes

Links

Evolution

Homologs in Other Organisms

Do-It-Yourself Web Tools

Notes

Families

Notes

Links

References

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