artJ:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

Quickview

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<protect>

Standard Name

artJ

Gene Synonym(s)

ECK0851, b0860, JW0844[1], JW0844

Product Desc.

ArtJ[2][3];

Component of arginine ABC transporter[2][3]

Periplasmic binding protein of Arg transport system[4]

Product Synonyms(s)

arginine transporter subunit[1], periplasmic-binding component of ABC superfamily[1], B0860[2][1], ArtJ[2][1] , ECK0851, JW0844, b0860

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): artJ[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

</protect> See Help:Quickview for help with entering information in the Quickview table. <protect></protect>

Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

artJ

Mnemonic

Arginine transport

Synonyms

ECK0851, b0860, JW0844[1], JW0844

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

19.38 minutes 

MG1655: 899798..899067
<gbrowseImage> name=NC_000913:899067..899798 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 917282..916551
<gbrowseImage> name=NC_012967:916551..917282 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 802035..802766
<gbrowseImage> name=NC_012759:802035..802766 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 900997..900266
<gbrowseImage> name=NC_007779:900266..900997 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 953726..952995
<gbrowseImage> name=NC_010473:952995..953726 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

899070

Edman degradation

PMID:8801422
PMID:9298646
PMID:9600841


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔartJ (Keio:JW0844)

deletion

deletion

PMID:16738554

Shigen
CGSC8880[5]

ΔartJ761::kan

PMID:16738554

CGSC:100090


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Notes

Genetic Interactions

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<protect>

Interactor Interaction Allele Score(s) Reference(s) Accessions Notes

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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW0844

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCAAAAAGTTAGTTCTTGCCGC

Primer 2:CCCTGTGGGAACCACTGGTCACT

14H6

Kohara Phage

Genobase

PMID:3038334

zbh-29::Tn10

Linked marker

CAG18493 = CGSC7353[5]

est. P1 cotransduction: % [6]
Synonyms:zbi-29::Tn10

zca-1230::Tn10

Linked marker

CAG18478 = CGSC7356[5]

est. P1 cotransduction: 12% [6]
Synonyms:zbj-1230::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG11628

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11628

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001576

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:948981

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1585

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002927

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

ArtJ

Synonyms

arginine transporter subunit[1], periplasmic-binding component of ABC superfamily[1], B0860[2][1], ArtJ[2][1] , ECK0851, JW0844, b0860

Product description

ArtJ[2][3];

Component of arginine ABC transporter[2][3]

Periplasmic binding protein of Arg transport system[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0005215

transporter activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001638

F

Seeded from EcoCyc (v14.0)

complete

GO:0005215

transporter activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005768

F

Seeded from EcoCyc (v14.0)

complete

GO:0005215

transporter activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018313

F

Seeded from EcoCyc (v14.0)

complete

GO:0016597

amino acid binding

PMID:8801422

IDA: Inferred from Direct Assay

F

Table 3

complete

GO:0006810

transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001638

P

Seeded from EcoCyc (v14.0)

complete

GO:0042597

periplasmic space

PMID:8801422

IDA: Inferred from Direct Assay

C

Figure 5

complete

GO:0006810

transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005768

P

Seeded from EcoCyc (v14.0)

complete

GO:0034618

arginine binding

PMID:8801422

IDA: Inferred from Direct Assay

F

complete

GO:0006810

transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018313

P

Seeded from EcoCyc (v14.0)

complete

GO:0006810

transport

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0813

P

Seeded from EcoCyc (v14.0)

complete

GO:0015809

arginine transport

PMID:8801422

IMP: Inferred from Mutant Phenotype

P

complete

GO:0006865

amino acid transport

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0029

P

Seeded from EcoCyc (v14.0)

complete

GO:0030288

outer membrane-bounded periplasmic space

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001638

C

Seeded from EcoCyc (v14.0)

complete

GO:0030288

outer membrane-bounded periplasmic space

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005768

C

Seeded from EcoCyc (v14.0)

complete

GO:0030288

outer membrane-bounded periplasmic space

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018313

C

Seeded from EcoCyc (v14.0)

complete

GO:0042597

periplasmic space

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0574

C

Seeded from EcoCyc (v14.0)

complete

GO:0042597

periplasmic space

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0200

C

Seeded from EcoCyc (v14.0)

complete

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of arginine ABC transporter

could be indirect


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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

periplasm

From EcoCyc[3]

Periplasm

PMID:8801423

EchoLocation:artJ


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc

MKKLVLAALL ASFTFGASAA EKINFGVSAT YPPFESIGAN NEIVGFDIDL AKALCKQMQA
ECTFTNHAFD SLIPSLKFRK YDAVISGMDI TPERSKQVSF TTPYYENSAV VIAKKDTYKT
FADLKGKRIG MENGTTHQKY IQDQHPEVKT VSYDSYQNAF IDLKNGRIDG VFGDTAVVNE
WLKTNPQLGV ATEKVTDPQY FGTGLGIAVR PDNKALLEKL NNALAAIKAD GTYQKISDQW FPQ
Length

243

Mol. Wt

26.829 kDa

pI

7.4 (calculated)

Extinction coefficient

25,900 - 26,150 (calc based on 10 Y, 2 W, and 2 C residues)


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

motif

1-19

UniProt Manual:Signal Peptides

UniProt:P30860

Domain

23..243

PF00497 Bacterial extracellular solute-binding proteins, family 3

PMID:19920124

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=artJ taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128828

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948981

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002927

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P30860

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11628

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11628

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948981

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001576

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1585

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

3.15E+02

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

E. coli K-12 EMG2

1180

molecules/cell

  • Medium: MOPS glucose minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • Growth phase: Exponential
  • OD: OD600 = 0.2 to 0.25
  • other: aerated

Quantitative protein sequencing

Spot ID: M37

PMID: 9298646

Protein

E. coli K-12 MG1655

544

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

5888

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

148

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

artJ

Figure courtesy of RegulonDB

</protect>

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:899778..899818 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

</protect>

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference


Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b0860 (EcoliWiki Page)

NCBI GEO profiles for artJ

microarray

GenExpDB:b0860 (EcoliWiki Page)

Summary of data for artJ from multiple microarray studies


Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

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Notes

Accessions Related to artJ Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG11628

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1585

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0860

EcoGene

EcoGene:EG11628

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001576

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002927

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Apis mellifera

  • ENSAPMP00000025173 (score: 1.000; bootstrap: 100%)
  • ENSAPMP00000024244 (score: 0.294)
  • ENSAPMP00000029857 (score: 0.231)
  • ENSAPMP00000016287 (score: 0.172)
  • ENSAPMP00000028248 (score: 0.160)
  • ENSAPMP00000034959 (score: 0.098)
  • ENSAPMP00000025563 (score: 0.087)
  • ENSAPMP00000013521 (score: 0.076)
  • ENSAPMP00000005337 (score: 0.073)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT2G17260 (score: 1.000; bootstrap: 100%)
  • AT1G42540 (score: 1.000; bootstrap: 100%)
  • AT4G35290 (score: 0.740)
  • AT3G51480 (score: 0.529)
  • AT1G05200 (score: 0.488)
  • AT2G32390 (score: 0.447)
  • AT2G32400 (score: 0.388)
  • AT2G29120 (score: 0.248)
  • AT2G29110 (score: 0.239)
  • AT2G24720 (score: 0.237)
  • AT2G29100 (score: 0.233)
  • AT2G24710 (score: 0.227)
  • AT5G11210 (score: 0.213)
  • AT5G27100 (score: 0.202)
  • AT4G31710 (score: 0.192)
  • AT5G11180 (score: 0.177)
  • AT3G07520 (score: 0.163)
  • AT5G48400 (score: 0.143)
  • AT5G48410 (score: 0.135)
  • AT3G04110 (score: 0.115)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000022788 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000024560 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000012214 (score: 0.428)
  • ENSBTAP00000026817 (score: 0.426)
  • ENSBTAP00000015567 (score: 0.402)
  • ENSBTAP00000032956 (score: 0.318)
  • ENSBTAP00000015717 (score: 0.218)
  • ENSBTAP00000006271 (score: 0.212)
  • ENSBTAP00000018244 (score: 0.177)
  • ENSBTAP00000000263 (score: 0.142)
  • ENSBTAP00000010376 (score: 0.126)
  • ENSBTAP00000015137 (score: 0.116)
  • ENSBTAP00000031756 (score: 0.113)
  • ENSBTAP00000035962 (score: 0.113)
  • ENSBTAP00000026819 (score: 0.111)
  • ENSBTAP00000035007 (score: 0.107)
  • ENSBTAP00000006272 (score: 0.050)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00033807 (score: 1.000; bootstrap: 82%)
  • WBGene00040593 (score: 0.222)
  • WBGene00037593 (score: 0.130)
  • WBGene00024756 (score: 0.124)
  • WBGene00036496 (score: 0.124)
  • WBGene00032152 (score: 0.116)
  • WBGene00025232 (score: 0.097)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00001615 (score: 1.000; bootstrap: 77%)
  • WBGene00001614 (score: 0.223)
  • WBGene00001612 (score: 0.133)
  • WBGene00001613 (score: 0.130)
  • WBGene00001616 (score: 0.122)
  • WBGene00001617 (score: 0.115)
  • WBGene00001618 (score: 0.100)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000026248 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000023480 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000012708 (score: 0.661)
  • ENSCAFP00000021888 (score: 0.660)
  • ENSCAFP00000027399 (score: 0.652)
  • ENSCAFP00000014728 (score: 0.530)
  • ENSCAFP00000005336 (score: 0.285)
  • ENSCAFP00000012922 (score: 0.270)
  • ENSCAFP00000004975 (score: 0.269)
  • ENSCAFP00000017493 (score: 0.230)
  • ENSCAFP00000007350 (score: 0.138)
  • ENSCAFP00000028837 (score: 0.075)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000017577 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000016353 (score: 0.146)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-030616-53 (score: 1.000; bootstrap: 100%)
  • ZDB-GENE-040724-186 (score: 1.000; bootstrap: 100%)
  • ZDB-GENE-020125-5 (score: 0.896)
  • ZDB-GENE-030131-8013 (score: 0.705)
  • ZDB-GENE-020125-3 (score: 0.697)
  • ZDB-GENE-020125-4 (score: 0.673)
  • ZDB-GENE-040913-1 (score: 0.143)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0020429 (score: 1.000; bootstrap: 100%)
  • FBgn0038840 (score: 1.000; bootstrap: 100%)
  • FBgn0028422 (score: 1.000; bootstrap: 100%)
  • FBgn0051201 (score: 0.561)
  • FBgn0004620 (score: 0.386)
  • FBgn0038837 (score: 0.364)
  • FBgn0031293 (score: 0.319)
  • FBgn0039927 (score: 0.282)
  • FBgn0026255 (score: 0.233)
  • FBgn0028431 (score: 0.215)
  • FBgn0039916 (score: 0.189)
  • FBgn0004619 (score: 0.176)
  • FBgn0031634 (score: 0.079)
  • FBgn0010399 (score: 0.071)
  • FBgn0053513 (score: 0.050)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA15505-PA (score: 1.000; bootstrap: 100%)
  • GA13857-PA (score: 0.059)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000027694 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000013849 (score: 0.711)
  • ENSGALP00000015306 (score: 0.705)
  • ENSGALP00000006483 (score: 0.664)
  • ENSGALP00000024847 (score: 0.301)
  • ENSGALP00000025484 (score: 0.291)
  • ENSGALP00000003269 (score: 0.282)
  • ENSGALP00000010709 (score: 0.239)
  • ENSGALP00000002919 (score: 0.149)
  • ENSGALP00000016913 (score: 0.141)
  • ENSGALP00000001774 (score: 0.073)
  • ENSGALP00000014455 (score: 0.071)
  • ENSGALP00000019247 (score: 0.057)
  • ENSGALP00000011779 (score: 0.055)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000285900 (score: 1.000; bootstrap: 100%)
  • ENSP00000330148 (score: 1.000; bootstrap: 100%)
  • ENSP00000296526 (score: 0.666)
  • ENSP00000282499 (score: 0.656)
  • ENSP00000264357 (score: 0.644)
  • ENSP00000282020 (score: 0.561)
  • ENSP00000296893 (score: 0.307)
  • ENSP00000296212 (score: 0.298)
  • ENSP00000311646 (score: 0.298)
  • ENSP00000301218 (score: 0.249)
  • ENSP00000278723 (score: 0.249)
  • ENSP00000316696 (score: 0.090)
  • ENSP00000293190 (score: 0.061)
  • ENSP00000279593 (score: 0.057)
  • ENSP00000263269 (score: 0.053)
  • ENSP00000332549 (score: 0.051)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000012165 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000024019 (score: 0.674)
  • ENSMMUP00000011880 (score: 0.626)
  • ENSMMUP00000014398 (score: 0.553)
  • ENSMMUP00000006496 (score: 0.296)
  • ENSMMUP00000012661 (score: 0.293)
  • ENSMMUP00000012909 (score: 0.240)
  • ENSMMUP00000022947 (score: 0.205)
  • ENSMMUP00000029417 (score: 0.203)
  • ENSMMUP00000003163 (score: 0.144)
  • ENSMMUP00000031084 (score: 0.120)
  • ENSMMUP00000025129 (score: 0.057)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000011093 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000018436 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000018762 (score: 0.736)
  • ENSMODP00000002210 (score: 0.713)
  • ENSMODP00000022196 (score: 0.297)
  • ENSMODP00000026240 (score: 0.294)
  • ENSMODP00000016371 (score: 0.249)
  • ENSMODP00000024134 (score: 0.246)
  • ENSMODP00000022522 (score: 0.232)
  • ENSMODP00000013814 (score: 0.123)
  • ENSMODP00000024057 (score: 0.104)
  • ENSMODP00000021436 (score: 0.066)
  • ENSMODP00000022701 (score: 0.061)

From Inparanoid:20070104

Mus musculus

  • MGI:95808 (score: 1.000; bootstrap: 100%)
  • MGI:95812 (score: 1.000; bootstrap: 100%)
  • MGI:95809 (score: 0.661)
  • MGI:95811 (score: 0.650)
  • MGI:95810 (score: 0.638)
  • MGI:95813 (score: 0.558)
  • MGI:95815 (score: 0.310)
  • MGI:95816 (score: 0.297)
  • MGI:95818 (score: 0.249)
  • MGI:95817 (score: 0.248)
  • MGI:95814 (score: 0.243)
  • MGI:95819 (score: 0.089)
  • MGI:95822 (score: 0.066)
  • MGI:95821 (score: 0.059)
  • MGI:95823 (score: 0.053)
  • MGI:95820 (score: 0.053)

From Inparanoid:20070104

Oryza gramene

  • Q69L09 (score: 1.000; bootstrap: 100%)
  • Q653Y6 (score: 1.000; bootstrap: 100%)
  • Q8LH04 (score: 0.567)
  • Q6ZGL7 (score: 0.509)
  • Q69L15 (score: 0.505)
  • Q69L11 (score: 0.503)
  • Q69L07 (score: 0.501)
  • Q7XP59 (score: 0.501)
  • Q69L05 (score: 0.492)
  • Q5QLP6 (score: 0.360)
  • Q6K4P7 (score: 0.309)
  • Q69NA4 (score: 0.281)
  • Q69NA5 (score: 0.253)
  • Q69TK2 (score: 0.207)
  • Q5VMN1 (score: 0.195)
  • Q69KL0 (score: 0.145)
  • Q69TK3 (score: 0.121)
  • Q69KL2 (score: 0.098)
  • Q69TK5 (score: 0.095)
  • Q69KK7 (score: 0.092)
  • Q69KK9 (score: 0.059)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000029795 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000028409 (score: 0.666)
  • ENSPTRP00000007287 (score: 0.418)
  • ENSPTRP00000038299 (score: 0.312)
  • ENSPTRP00000031512 (score: 0.307)
  • ENSPTRP00000000961 (score: 0.162)
  • ENSPTRP00000004711 (score: 0.082)
  • ENSPTRP00000018971 (score: 0.076)
  • ENSPTRP00000027975 (score: 0.073)
  • ENSPTRP00000016345 (score: 0.063)
  • ENSPTRP00000008060 (score: 0.057)
  • ENSPTRP00000018965 (score: 0.053)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000051556 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000032971 (score: 0.725)
  • ENSRNOP00000009542 (score: 0.706)
  • ENSRNOP00000000415 (score: 0.297)
  • ENSRNOP00000040569 (score: 0.290)
  • ENSRNOP00000012065 (score: 0.279)
  • ENSRNOP00000027578 (score: 0.251)
  • ENSRNOP00000047794 (score: 0.241)
  • ENSRNOP00000008304 (score: 0.139)
  • ENSRNOP00000029227 (score: 0.070)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000132779 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000148659 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000150370 (score: 0.633)
  • NEWSINFRUP00000141976 (score: 0.612)
  • NEWSINFRUP00000130630 (score: 0.605)
  • NEWSINFRUP00000171567 (score: 0.605)
  • NEWSINFRUP00000172679 (score: 0.562)
  • NEWSINFRUP00000131012 (score: 0.525)
  • NEWSINFRUP00000161099 (score: 0.502)
  • NEWSINFRUP00000127449 (score: 0.252)
  • NEWSINFRUP00000161407 (score: 0.250)
  • NEWSINFRUP00000176766 (score: 0.248)
  • NEWSINFRUP00000178985 (score: 0.248)
  • NEWSINFRUP00000170962 (score: 0.215)
  • NEWSINFRUP00000148099 (score: 0.202)
  • NEWSINFRUP00000148098 (score: 0.196)
  • NEWSINFRUP00000169694 (score: 0.139)
  • NEWSINFRUP00000153442 (score: 0.139)
  • NEWSINFRUP00000127386 (score: 0.083)
  • NEWSINFRUP00000127414 (score: 0.075)
  • NEWSINFRUP00000166281 (score: 0.073)
  • NEWSINFRUP00000172202 (score: 0.072)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00011565001 (score: 1.000; bootstrap: 73%)
  • GSTENP00031562001 (score: 0.406)
  • GSTENP00032629001 (score: 0.213)

From Inparanoid:20070104

Shigella flexneri

ARTJ

From SHIGELLACYC

E. coli O157

ARTJ

From ECOO157CYC


Do-It-Yourself Web Tools

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00497 Bacterial extracellular solute-binding proteins, family 3

Superfamily (EcoliWiki Page)

SUPERFAMILY:53850

EcoCyc

EcoCyc:EG11628

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11628

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001576

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1585

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002927

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. 3.0 3.1 3.2 3.3 3.4 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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