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!align=left {{table_heading_style}} |Standard name
!align=left |Standard name
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''ompF''  
''ompF''  
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!align=left {{table_heading_style}} |Mnemonic
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!align=left {{table_heading_style}} |Synonyms
!align=left |Synonyms
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''ECK0920, b0929, JW0912, cmlB, coa, cry, tolF, nfxB?''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''ECK0920, b0929, JW0912, cmlB, coa, cry, tolF, nfxB?''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>


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!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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{{GBrowseFastaLink|ecoli|NC_000913|985117|986205|FASTA Dump}}
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*[http://biocyc.org/ECOLI/sequence?object=EG10671 EcoCyc Sequence Dump]  
*[http://biocyc.org/ECOLI/sequence?object=EG10671 EcoCyc Sequence Dump]  
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[[REL606]]
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NC_012967: 1002986..1004074<br />{{GBrowseFigureByCoord|1002986|1004074|REL606|NC_012967}}
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{{GBrowseFastaLink|ecoli_DH10B|NC_010473|1036869|1042309|FASTA Dump}}  
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NC_012967: 1002986..1004074<br />{{GBrowseFigureByCoord|1002986|1004074|REL606|NC_012967}}
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!|Feature type!!Location!!Description
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est. P1 cotransduction: 54% <ref name='LIB:Nichols_linked_Tn'/>  
est. P1 cotransduction: 54% <ref name='LIB:Nichols_linked_Tn'/>  


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Revision as of 02:30, 9 January 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

ompF

Mnemonic
Synonyms

ECK0920, b0929, JW0912, cmlB, coa, cry, tolF, nfxB?[1][2]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

21.23 minutes 

MG1655: 986205..985117
gbrowse_img.php?coord=985117..986205&genome=ecoli&name=MG1655&trackset=0&width=300&.png

REL606

NC_012967: 1002986..1004074
gbrowse_img.php?coord=1002986..1004074&genome=REL606&name=NC_012967&trackset=0&width=300&.png

W3110

 

W3110: 987404..986316
gbrowse_img.php?coord=986316..987404&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

DH10B

DH10B: 1040133..1039045
gbrowse_img.php?coord=1039045..1040133&genome=ecoli_DH10B&name=DH10B&trackset=0&width=300&.png

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature type Location Description
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔompF (Keio:JW0912)

deletion

deletion

PMID:16738554[3]

Shigen
CGSC8925[4]

ompF627(T2R)

T2 resistant

PMID:3286621[5]

CGSC:4722

ompF626

CGSC:6264

ompF254

CGSC:6819

ompF625

CGSC:11640

ΔompF746::kan

PMID:16738554[3]

CGSC:102178


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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW0912

Plasmid clone

Shigen

PMID:16769691[6]

Status:Clone OK

Primer 1:GCCATGAAGCGCAATATTCTGGC

Primer 2:CCGAACTGGTAAACGATACCCAC

zca-1230::Tn10

Linked marker

CAG18478 = CGSC7356[4]

est. P1 cotransduction: 20% [7]
Synonyms:zbj-1230::Tn10

zcb-3059::Tn10

Linked marker

CAG12094 = CGSC7358[4]

est. P1 cotransduction: 54% [7]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10671

EchoBASE (EcoliWiki Page)

EchoBASE:EB0665

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0929

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C1071

EcoGene (EcoliWiki Page)

EcoGene:EG10671

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:OMPF

CGSC (EcoliWiki Page)

CGSC:435

ASAP (EcoliWikiPage)

ASAP:ABE-0003153


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  4. ↑ 4.0 4.1 4.2 CGSC: The Coli Genetics Stock Center
  5. ↑ Black, PN (1988) The fadL gene product of Escherichia coli is an outer membrane protein required for uptake of long-chain fatty acids and involved in sensitivity to bacteriophage T2. J. Bacteriol. 170 2850-4 PubMed
  6. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  7. ↑ 7.0 7.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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