insB-7 2:Gene: Difference between revisions

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Revision as of 22:30, 14 December 2009

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

insB-7_2

Mnemonic
Synonyms

insB, ECK0022, b0021, JW0020, b0264, JW0256, b0274, JW0268, b0988, JW0972, b1893, unique to MG1655, b3445, JW3409, b4563, JW4255, b4564, JW4256, b4576, JW4255+JW4256, unique to W3110, JW2285, insB-1, insB-2, insB-3, insB-4, insB-5, insB-6, insB-7_1[1][2][3]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

0.43 minutes 

MG1655: 20314..19811
gbrowse_img.php?coord=19811..20314&genome=ecoli&name=MG1655&trackset=0&width=300&.png

REL606

NC_012967: 1322970..1323473
gbrowse_img.php?coord=1322970..1323473&genome=REL606&name=NC_012967&trackset=0&width=300&.png

REL606

NC_012967: 353279..353782
gbrowse_img.php?coord=353279..353782&genome=REL606&name=NC_012967&trackset=0&width=300&.png

REL606

NC_012967: 263041..263544
gbrowse_img.php?coord=263041..263544&genome=REL606&name=NC_012967&trackset=0&width=300&.png

REL606

NC_012967: 4550928..4551431
gbrowse_img.php?coord=4550928..4551431&genome=REL606&name=NC_012967&trackset=0&width=300&.png

REL606

NC_012967: 4521586..4522089
gbrowse_img.php?coord=4521586..4522089&genome=REL606&name=NC_012967&trackset=0&width=300&.png

REL606

NC_012967: 4505357..4505860
gbrowse_img.php?coord=4505357..4505860&genome=REL606&name=NC_012967&trackset=0&width=300&.png

REL606

NC_012967: 1193864..1194367
gbrowse_img.php?coord=1193864..1194367&genome=REL606&name=NC_012967&trackset=0&width=300&.png

REL606

NC_012967: 23540..24043
gbrowse_img.php?coord=23540..24043&genome=REL606&name=NC_012967&trackset=0&width=300&.png

REL606

NC_012967: 376764..377267
gbrowse_img.php?coord=376764..377267&genome=REL606&name=NC_012967&trackset=0&width=300&.png

REL606

NC_012967: 546947..547450
gbrowse_img.php?coord=546947..547450&genome=REL606&name=NC_012967&trackset=0&width=300&.png

REL606

NC_012967: 589570..590073
gbrowse_img.php?coord=589570..590073&genome=REL606&name=NC_012967&trackset=0&width=300&.png

REL606

NC_012967: 619132..619635
gbrowse_img.php?coord=619132..619635&genome=REL606&name=NC_012967&trackset=0&width=300&.png

REL606

NC_012967: 3433477..3433980
gbrowse_img.php?coord=3433477..3433980&genome=REL606&name=NC_012967&trackset=0&width=300&.png

REL606

NC_012967: 3023960..3024463
gbrowse_img.php?coord=3023960..3024463&genome=REL606&name=NC_012967&trackset=0&width=300&.png

REL606

NC_012967: 2822202..2822705
gbrowse_img.php?coord=2822202..2822705&genome=REL606&name=NC_012967&trackset=0&width=300&.png

REL606

NC_012967: 2682857..2683360
gbrowse_img.php?coord=2682857..2683360&genome=REL606&name=NC_012967&trackset=0&width=300&.png

REL606

NC_012967: 241506..242009
gbrowse_img.php?coord=241506..242009&genome=REL606&name=NC_012967&trackset=0&width=300&.png

REL606

NC_012967: 2618278..2618781
gbrowse_img.php?coord=2618278..2618781&genome=REL606&name=NC_012967&trackset=0&width=300&.png

REL606

NC_012967: 2407457..2407960
gbrowse_img.php?coord=2407457..2407960&genome=REL606&name=NC_012967&trackset=0&width=300&.png

REL606

NC_012967: 2262755..2263258
gbrowse_img.php?coord=2262755..2263258&genome=REL606&name=NC_012967&trackset=0&width=300&.png

REL606

NC_012967: 2143079..2143582
gbrowse_img.php?coord=2143079..2143582&genome=REL606&name=NC_012967&trackset=0&width=300&.png

REL606

NC_012967: 2128849..2129352
gbrowse_img.php?coord=2128849..2129352&genome=REL606&name=NC_012967&trackset=0&width=300&.png

REL606

NC_012967: 1460409..1460912
gbrowse_img.php?coord=1460409..1460912&genome=REL606&name=NC_012967&trackset=0&width=300&.png

REL606

NC_012967: 1973521..1974024
gbrowse_img.php?coord=1973521..1974024&genome=REL606&name=NC_012967&trackset=0&width=300&.png

REL606

NC_012967: 2034341..2034844
gbrowse_img.php?coord=2034341..2034844&genome=REL606&name=NC_012967&trackset=0&width=300&.png

REL606

NC_012967: 3741213..3741716
gbrowse_img.php?coord=3741213..3741716&genome=REL606&name=NC_012967&trackset=0&width=300&.png

W3110

 

W3110: 20314..19811
gbrowse_img.php?coord=19811..20314&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

MG1655

6 minutes 

MG1655: 278905..278402
gbrowse_img.php?coord=278402..278905&genome=ecoli&name=MG1655&trackset=0&width=300&.png

W3110

 

W3110: 278905..278402
gbrowse_img.php?coord=278402..278905&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

MG1655

6.25 minutes 

MG1655: 290376..289873
gbrowse_img.php?coord=289873..290376&genome=ecoli&name=MG1655&trackset=0&width=300&.png

W3110

 

W3110: 290376..289873
gbrowse_img.php?coord=289873..290376&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

MG1655

22.61 minutes 

MG1655: 1049250..1049753
gbrowse_img.php?coord=1049250..1049753&genome=ecoli&name=MG1655&trackset=0&width=300&.png

W3110

 

W3110: 1050449..1050952
gbrowse_img.php?coord=1050449..1050952&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

MG1655

42.6 minutes 

MG1655: 1977045..1976542
gbrowse_img.php?coord=1976542..1977045&genome=ecoli&name=MG1655&trackset=0&width=300&.png

W3110

 

W3110: 0..0
gbrowse_img.php?coord=0..0&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

MG1655

77.2 minutes 

MG1655: 3581700..3582203
gbrowse_img.php?coord=3581700..3582203&genome=ecoli&name=MG1655&trackset=0&width=300&.png

W3110

 

W3110: 4056738..4056235
gbrowse_img.php?coord=4056235..4056738&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

MG1655

97.35 minutes 

MG1655: 4516744..4517037
gbrowse_img.php?coord=4516744..4517037&genome=ecoli&name=MG1655&trackset=0&width=300&.png

W3110

 

W3110: 4523401..4523694
gbrowse_img.php?coord=4523401..4523694&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

MG1655

97.36 minutes 

MG1655: 4517038..4517247
gbrowse_img.php?coord=4517038..4517247&genome=ecoli&name=MG1655&trackset=0&width=300&.png

W3110

 

W3110: 4523695..4523904
gbrowse_img.php?coord=4523695..4523904&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

MG1655

 

MG1655: 4516744..4517247
gbrowse_img.php?coord=4516744..4517247&genome=ecoli&name=MG1655&trackset=0&width=300&.png

W3110

 

W3110: 4523401..4523904
gbrowse_img.php?coord=4523401..4523904&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

MG1655

 

MG1655: 0..0
gbrowse_img.php?coord=0..0&genome=ecoli&name=MG1655&trackset=0&width=300&.png

W3110

 

W3110: 2411976..2411473
gbrowse_img.php?coord=2411473..2411976&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

REL606

NC_012967: 633993..634496
gbrowse_img.php?coord=633993..634496&genome=REL606&name=NC_012967&trackset=0&width=300&.png

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature type Location Description
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691[4]

Status:

Primer 1:

Primer 2:

zjf-920::Tn10

Linked marker

CAG12019 = CGSC7484[5]

est. P1 cotransduction: 1% [6]
Synonyms:zjh-901::Tn10, zjg-920::Tn10

mdoB202::Tn10

Linked marker

CAG18430 = CGSC7488[5]

est. P1 cotransduction: 1% [6]
Synonyms:zjj-202::Tn10, zji-202::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G0-10570

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0988

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:Z5491

EchoBASE (EcoliWiki Page)

EchoBASE:EB4719

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C4498

ASAP (EcoliWikiPage)

ASAP:ABE-0000075

ASAP (EcoliWikiPage)

ASAP:ABE-0000906

ASAP (EcoliWikiPage)

ASAP:ABE-0000948

ASAP (EcoliWikiPage)

ASAP:ABE-0003338

ASAP (EcoliWikiPage)

ASAP:ABE-0006308

ASAP (EcoliWikiPage)

ASAP:ABE-0011251

ASAP (EcoliWikiPage)

ASAP:ABE-0285084

ASAP (EcoliWikiPage)

ASAP:ABE-0285085


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Notes

Links

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Name URL Comments
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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  5. ↑ 5.0 5.1 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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