insB-7 2:Gene
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Interactions | Genetic Resources | Accessions | Links | References | Suggestions |
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Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
insB-7_2 |
|---|---|
| Mnemonic | |
| Synonyms |
insB, ECK0022, b0021, JW0020, b0264, JW0256, b0274, JW0268, b0988, JW0972, b1893, unique to MG1655, b3445, JW3409, b4563, JW4255, b4564, JW4256, b4576, JW4255+JW4256, unique to W3110, JW2285, insB-1, insB-2, insB-3, insB-4, insB-5, insB-6, insB-7_1[1][2][3] |
| edit table |
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Notes
Location(s) and DNA Sequence
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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
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MG1655 |
0.43 minutes |
MG1655: 20314..19811 |
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NC_012967: 1322970..1323473 |
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NC_012967: 353279..353782 |
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NC_012967: 263041..263544 |
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NC_012967: 4550928..4551431 |
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NC_012967: 4521586..4522089 |
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NC_012967: 4505357..4505860 |
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NC_012759: 4478031..4478534 |
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NC_012759: 994837..995340 |
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NC_012967: 1193864..1194367 |
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NC_012967: 23540..24043 |
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NC_012967: 376764..377267 |
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NC_012967: 546947..547450 |
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NC_012967: 589570..590073 |
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NC_012967: 619132..619635 |
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NC_012967: 633993..634496 |
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NC_012967: 3433477..3433980 |
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NC_012967: 3023960..3024463 |
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NC_012967: 2822202..2822705 |
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NC_012967: 2682857..2683360 |
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NC_012967: 241506..242009 |
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NC_012967: 2618278..2618781 |
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NC_012967: 2407457..2407960 |
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NC_012967: 2262755..2263258 |
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NC_012967: 2143079..2143582 |
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NC_012967: 2128849..2129352 |
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NC_012967: 1460409..1460912 |
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NC_012967: 1973521..1974024 |
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NC_012967: 2034341..2034844 |
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NC_012967: 3741213..3741716 |
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NC_012759: 1178223..1178726 |
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NC_012759: 19811..20314 |
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NC_012759: 3470194..3470697 |
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NC_012759: 952218..952721 |
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W3110 |
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W3110: 20314..19811 |
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MG1655 |
6 minutes |
MG1655: 278905..278402 |
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W3110 |
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W3110: 278905..278402 |
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MG1655 |
6.25 minutes |
MG1655: 290376..289873 |
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W3110 |
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W3110: 290376..289873 |
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MG1655 |
22.61 minutes |
MG1655: 1049250..1049753 |
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W3110 |
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W3110: 1050449..1050952 |
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MG1655 |
42.6 minutes |
MG1655: 1977045..1976542 |
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W3110 |
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W3110: 0..0 |
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MG1655 |
77.2 minutes |
MG1655: 3581700..3582203 |
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W3110 |
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W3110: 4056738..4056235 |
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MG1655 |
97.35 minutes |
MG1655: 4516744..4517037 |
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W3110 |
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W3110: 4523401..4523694 |
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MG1655 |
97.36 minutes |
MG1655: 4517038..4517247 |
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W3110 |
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W3110: 4523695..4523904 |
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MG1655 |
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MG1655: 4516744..4517247 |
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W3110 |
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W3110: 4523401..4523904 |
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MG1655 |
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MG1655: 0..0 |
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W3110 |
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W3110: 2411976..2411473 |
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Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
| edit table |
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Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
| edit table |
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Notes
Genetic Interactions
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| Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
|---|---|---|---|---|---|---|
| edit table |
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Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
Plasmid clone |
Status: Primer 1: Primer 2: | ||
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Linked marker |
est. P1 cotransduction: 1% [7] | ||
|
Linked marker |
est. P1 cotransduction: 1% [7] | ||
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 5.12 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
- ↑ 6.0 6.1 CGSC: The Coli Genetics Stock Center
- ↑ 7.0 7.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
