galE:Gene Product(s): Difference between revisions
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F | |||
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Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/> | |||
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[[Category:GO:0003978_!_UDP-glucose_4-epimerase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0003978_!_UDP-glucose_4-epimerase_activity GO:0003978] | |||
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UDP-glucose_4-epimerase_activity | |||
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[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000003 GO_REF:0000003]<br /> | |||
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IEA: Inferred from Electronic Annotation | |||
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EC:5.1.3.2 | |||
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F | F | ||
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[[Category:GO: | [[Category:GO:0005975_!_carbohydrate_metabolic_process]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0005975_!_carbohydrate_metabolic_process GO:0005975] | ||
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carbohydrate_metabolism | |||
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[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF: | [http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000004 GO_REF:0000004]<br /> | ||
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IEA: Inferred from Electronic Annotation | IEA: Inferred from Electronic Annotation | ||
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SP_KW:KW-0119 | |||
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P | |||
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Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/> | Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/> | ||
Revision as of 00:58, 30 September 2008
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
| Standard name |
GalE product |
|---|---|
| Synonyms |
UDP-galactose-4-epimerase product[1], B0759 product[2][1], GalD product[2][1], GalE product[2][1] |
| Product description |
UDP-glucose 4-epimerase monomer[2][3]; Component of ; UDP-glucose 4-epimerase[2][3] |
| EC number (for enzymes) | |
| edit table | |
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
Notes
Function
Gene Ontology
| Qualifier | GO ID | GO term name | Reference(s) | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0003978 |
UDP-glucose_4-epimerase_activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc 12.5 [4] |
||||
| GO:0003978 |
UDP-glucose_4-epimerase_activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc 12.5 [4] |
||||
| GO:0003824 |
catalytic_activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc 12.5 [4] |
||||
| GO:0005737 |
cytoplasm |
C |
Seeded from EcoCyc 11.1[3]. |
required fields missing | ||||
| GO:0006012 |
galactose metabolic process |
P |
Seeded from EcoCyc 11.1[3]. |
required fields missing | ||||
| GO:0009242 |
colanic acid biosynthetic process |
P |
Seeded from EcoCyc 11.1[3]. |
required fields missing | ||||
| GO:0016052 |
carbohydrate catabolic process |
P |
Seeded from EcoCyc 11.1[3]. |
required fields missing | ||||
| GO:0009435 |
NAD biosynthetic process |
P |
Seeded from EcoCyc 11.1[3]. |
required fields missing | ||||
| GO:0009269 |
response to desiccation |
P |
Seeded from EcoCyc 11.1[3]. |
required fields missing | ||||
| GO:0042280 |
cell surface antigen activity, host-interacting |
F |
Seeded from Riley et al 2006 [1]. |
required fields missing | ||||
| GO:0030113 |
capsule (sensu Bacteria) |
C |
Seeded from EcoCyc 11.1[3]. |
required fields missing | ||||
| GO:0005975 |
carbohydrate_metabolism |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc 12.5 [4] |
| |||
| edit table |
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
Interactions
| Partner Type | Partner | Notes |
|---|---|---|
|
Protein |
Subunits of UDP-glucose 4-epimerase |
could be indirect |
| edit table |
See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
Notes
Localization
| Compartment | Description | Evidence | Notes |
|---|---|---|---|
| edit table |
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
Notes
Structure and Physical Properties
Physical Properties
| Sequence |
MRVLVTGGSG YIGSHTCVQL LQNGHDVIIL DNLCNSKRSV LPVIERLGGK HPTFVEGDIR NEALMTEILH DHAIDTVIHF AGLKAVGESV QKPLEYYDNN VNGTLRLISA MRAANVKNFI FSSSATVYGD QPKIPYVESF PTGTPQSPYG KSKLMVEQIL TDLQKAQPDW SIALLRYFNP VGAHPSGDMG EDPQGIPNNL MPYIAQVAVG RRDSLAIFGN DYPTEDGTGV RDYIHVMDLA DGHVVAMEKL ANKPGVHIYN LGAGVGNSVL DVVNAFSKAC GKPVNYHFAP RREGDLPAYW ADASKADREL NWRVTRTLDE MAQDTWHWQS RHPQGYPD |
|---|---|
| Mol. Wt |
37.27 kDa (calc) [2] |
| pI |
6.28[2] |
| Extinction coefficient |
48360 - 48735 (calc based on 14 Y, 5 W, and 3 C residues) |
| edit table | |
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
Domains/Motifs/Modification Sites
| Type | Residues | Description | Notes |
|---|---|---|---|
| edit table |
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
Structure
| Structure Type | Organism | Accession | Residues covered | Notes |
|---|---|---|---|---|
|
X-RAY DIFFRACTION |
Escherichia coli |
2UDP UDP-GALACTOSE 4-EPIMERASE COMPLEXED WITH UDP-PHENOL |
||
|
X-RAY DIFFRACTION |
Escherichia coli |
1XEL UDP-GALACTOSE 4-EPIMERASE FROM ESCHERICHIA COLI |
||
|
X-RAY DIFFRACTION |
Escherichia coli |
1UDC STRUCTURE OF UDP-GALACTOSE-4-EPIMERASE COMPLEXED WITH UDP-MANNOSE |
||
|
X-RAY DIFFRACTION |
Escherichia coli |
1UDB STRUCTURE OF UDP-GALACTOSE-4-EPIMERASE COMPLEXED WITH UDP-4-DEOXY-4-FLUORO-ALPHA-D-GLUCOSE |
||
|
X-RAY DIFFRACTION |
Escherichia coli |
1UDA STRUCTURE OF UDP-GALACTOSE-4-EPIMERASE COMPLEXED WITH UDP-4-DEOXY-4-FLUORO-ALPHA-D-GALACTOSE |
||
|
X-RAY DIFFRACTION |
Escherichia coli |
1NAI UDP-GALACTOSE 4-EPIMERASE FROM ESCHERICHIA COLI, OXIDIZED |
||
|
X-RAY DIFFRACTION |
Escherichia coli |
1NAH UDP-GALACTOSE 4-EPIMERASE FROM ESCHERICHIA COLI, REDUCED |
||
|
X-RAY DIFFRACTION |
Escherichia coli |
1LRL Crystal Structure of UDP-Galactose 4-Epimerase Mutant Y299C Complexed with UDP-Glucose |
||
|
X-RAY DIFFRACTION |
Escherichia coli |
1LRK Crystal Structure of Escherichia coli UDP-Galactose 4-Epimerase Mutant Y299C Complexed with UDP-N-acetylglucosamine |
||
|
X-RAY DIFFRACTION |
Escherichia coli |
1LRJ Crystal Structure of E. coli UDP-Galactose 4-Epimerase Complexed with UDP-N-Acetylglucosamine |
||
|
X-RAY DIFFRACTION |
Escherichia coli |
1KVU UDP-GALACTOSE 4-EPIMERASE COMPLEXED WITH UDP-PHENOL |
||
|
X-RAY DIFFRACTION |
Escherichia coli |
1KVT UDP-GALACTOSE 4-EPIMERASE COMPLEXED WITH UDP-PHENOL |
||
|
X-RAY DIFFRACTION |
Escherichia coli |
1KVS UDP-GALACTOSE 4-EPIMERASE COMPLEXED WITH UDP-PHENOL |
||
|
X-RAY DIFFRACTION |
Escherichia coli |
1KVR UDP-GALACTOSE 4-EPIMERASE COMPLEXED WITH UDP-PHENOL |
||
|
X-RAY DIFFRACTION |
Escherichia coli |
1KVQ UDP-GALACTOSE 4-EPIMERASE COMPLEXED WITH UDP-PHENOL |
||
|
X-RAY DIFFRACTION |
Escherichia coli |
1A9Z UDP-GALACTOSE 4-EPIMERASE MUTANT S124A/Y149F COMPLEXED WITH UDP-GALACTOSE |
||
|
X-RAY DIFFRACTION |
Escherichia coli |
1A9Y UDP-GALACTOSE 4-EPIMERASE MUTANT S124A/Y149F COMPLEXED WITH UDP-GLUCOSE |
||
| edit table |
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.
Notes
Gene Product Resources
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
Notes
Accessions in Other Databases
| Database | Accession | Notes |
|---|---|---|
| edit table |
See Help:Product_accessions for help entering or editing information in this section of EcoliWiki.
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
See Help:Links_table for how to enter or edit information in this section of EcoliWiki.
References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 3.8 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 4.2 4.3 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
Categories
- GO:0003978 ! UDP-glucose 4-epimerase activity
- GO:0003824 ! catalytic activity
- GO:0005737 ! cytoplasm
- GO:0006012 ! galactose metabolic process
- GO:0009242 ! colanic acid biosynthetic process
- GO:0016052 ! carbohydrate catabolic process
- GO:0009435 ! NAD biosynthetic process
- GO:0009269 ! response to desiccation
- GO:0042280 ! cell surface antigen activity, host-interacting
- GO:0030113 ! capsule (sensu Bacteria)
- GO:0005975 ! carbohydrate metabolic process
- Proteins
- Complex:UDP-glucose 4-epimerase
- Products with structures in PDB