mscL:Gene: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
touch
touch
Line 128: Line 128:
|
|
W3110: 4202392..4201982<br /><gbrowseImage>
W3110: 4202392..4201982<br /><gbrowseImage>
name=AC_000091:4201982..4202392
name=NC_007779:4201982..4202392
source=W3110
source=W3110
preset=GeneLocation
preset=GeneLocation
Line 134: Line 134:


|
|
{{GBrowseLink|W3110|AC_000091|4200982|4203392|GBrowse(W3110)}}  
{{GBrowseLink|W3110|NC_007779|4200982|4203392|GBrowse(W3110)}}  
|
|
{{GBrowseFastaLink|W3110|AC_000091|4201982|4202392|FASTA Dump}}  
{{GBrowseFastaLink|W3110|NC_007779|4201982|4202392|FASTA Dump}}  
|-  
|-  
|
|
Line 361: Line 361:
|-  
|-  
|
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
[[RegulonDB]]
|
|
[http://www.ncbi.nlm.nih.gov/gene?term=947787 GeneID:947787]
RegulonDB:ECK120001162
|
|
Escherichia coli str. K-12 substr. MG1655  
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[[RegulonDB]]
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
|
RegulonDB:ECK120001162
[http://www.ncbi.nlm.nih.gov/gene?term=947787 GeneID:947787]
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
Escherichia coli str. K-12 substr. MG1655  
|-  
|-  
|
|

Revision as of 20:46, 19 September 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

[back to top]


See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

mscL

Mnemonic

Mechanosensitive channel

Synonyms

ECK3277, b3291, JW3252, yhdC[1], stkA, yhdC

edit table


Notes

Location(s) and DNA Sequence

[back to top]


See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

74.06 minutes 

MG1655: 3436046..3436456
<gbrowseImage> name=NC_000913:3436046..3436456 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 3365929..3366339
<gbrowseImage> name=NC_012967:3365929..3366339 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 3323203..3323613
<gbrowseImage> name=NC_012759:3323203..3323613 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 4202392..4201982
<gbrowseImage> name=NC_007779:4201982..4202392 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 3533791..3534201
<gbrowseImage> name=NC_010473:3533791..3534201 source=DH10B preset=GeneLocation </gbrowseImage>

edit table


Notes

Sequence Features

[back to top]


See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

3436046

Edman degradation

PMID:7511799[2]


edit table


Notes

Alleles and Phenotypes

[back to top]


See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔmscL (Keio:JW3252)

deletion

deletion

PMID:16738554[3]

Shigen
CGSC10453[4]

ΔmscL727::kan

PMID:16738554[3]

CGSC:101954


edit table


Notes

Genetic Interactions

[back to top]



Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
edit table


Notes

Genetic Resources

[back to top]


See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW3252

Plasmid clone

Shigen

PMID:16769691[5]

Status:Clone OK

Primer 1:GCCAGCATTATTAAAGAATTTCG

Primer 2:CCAGAGCGGTTATTCTGCTCTTT

smg-3082::Tn10

Linked marker

CAG12071 = CGSC7444[4]

est. P1 cotransduction: 78% [6]
Synonyms:zhb-3082::Tn10, zhd-3082::Tn10

zhf-3084::Tn10

Linked marker

CAG18456 = CGSC7576[4]

est. P1 cotransduction: 2% [6]
Synonyms:zhe-3084::Tn10nnnCAG18456 also carries cysG0 (CGSC).

edit table


Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG11180

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11180

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001162

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:947787

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1167

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010790

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

[back to top]



<protect>

References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ Sukharev, SI et al. (1994) A large-conductance mechanosensitive channel in E. coli encoded by mscL alone. Nature 368 265-8 PubMed
  3. ↑ 3.0 3.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  4. ↑ 4.0 4.1 4.2 CGSC: The Coli Genetics Stock Center
  5. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=mscL:Gene&oldid=1479736"