parE:Gene: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
touch
touch
 
Line 128: Line 128:
|
|
W3110: 3174052..3172160<br /><gbrowseImage>
W3110: 3174052..3172160<br /><gbrowseImage>
name=AC_000091:3172160..3174052
name=NC_007779:3172160..3174052
source=W3110
source=W3110
preset=GeneLocation
preset=GeneLocation
Line 134: Line 134:


|
|
{{GBrowseLink|W3110|AC_000091|3171160|3175052|GBrowse(W3110)}}  
{{GBrowseLink|W3110|NC_007779|3171160|3175052|GBrowse(W3110)}}  
|
|
{{GBrowseFastaLink|W3110|AC_000091|3172160|3174052|FASTA Dump}}  
{{GBrowseFastaLink|W3110|NC_007779|3172160|3174052|FASTA Dump}}  
|-  
|-  
|
|
Line 374: Line 374:
|-  
|-  
|
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
[[RegulonDB]]
|
|
[http://www.ncbi.nlm.nih.gov/gene?term=947501 GeneID:947501]
RegulonDB:ECK120000680
|
|
Escherichia coli str. K-12 substr. MG1655  
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[[RegulonDB]]
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
|
RegulonDB:ECK120000680
[http://www.ncbi.nlm.nih.gov/gene?term=947501 GeneID:947501]
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
Escherichia coli str. K-12 substr. MG1655  
|-  
|-  
|
|

Latest revision as of 20:45, 19 September 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

[back to top]


See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

parE

Mnemonic

Partition

Synonyms

ECK3021, b3030, JW2998, nfxD[1], nfxD

edit table


Notes

Location(s) and DNA Sequence

[back to top]


See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

68.36 minutes 

MG1655: 3173418..3171526
<gbrowseImage> name=NC_000913:3171526..3173418 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 3109568..3107676
<gbrowseImage> name=NC_012967:3107676..3109568 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 3058674..3060566
<gbrowseImage> name=NC_012759:3058674..3060566 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 3174052..3172160
<gbrowseImage> name=NC_007779:3172160..3174052 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 3271163..3269271
<gbrowseImage> name=NC_010473:3269271..3271163 source=DH10B preset=GeneLocation </gbrowseImage>

edit table


Notes

Sequence Features

[back to top]


See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
edit table


Notes

Alleles and Phenotypes

[back to top]


See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

parEL445H

L445H

(in strain: DH161; quinolone- resistant)

Strain variation; seeded from UniProt:P20083

parEC316Y

C316Y

Sensitivity to

temperature sensitivity

PMID:12509418[2]

identical to wt TopoIV in the superhelical DNA relaxation assay at permissive temperature

edit table


Notes

Genetic Interactions

[back to top]



Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
edit table


Notes

Genetic Resources

[back to top]


See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW2998

Plasmid clone

Shigen

PMID:16769691[3]

Status:Clone OK

Primer 1:GCCACGCAAACTTATAACGCTGA

Primer 2:CCAACCTCAATCTCCGCCATGTC

17B2

Kohara Phage

Genobase

PMID:3038334[4]

6B12

Kohara Phage

Genobase

PMID:3038334[4]

metC162::Tn10

Linked marker

CAG18475 = CGSC7435[5]

est. P1 cotransduction: 46% [6]

tolC210::Tn10

Linked marker

CAG12184 = CGSC7437[5]

est. P1 cotransduction: 80% [6]

plex5BA-parEC

Plasmid Clone

edit table


Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10687

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10687

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000680

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:947501

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0681

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009950

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

[back to top]



<protect>

References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ Nurse, P et al. (2003) Topoisomerase III can serve as the cellular decatenase in Escherichia coli. J. Biol. Chem. 278 8653-60 PubMed
  3. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  4. ↑ 4.0 4.1 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
  5. ↑ 5.0 5.1 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  7. ↑ Mossessova, E et al. (2000) Mutational analysis of Escherichia coli topoisomerase IV. I. Selection of dominant-negative parE alleles. J. Biol. Chem. 275 4099-103 PubMed

Categories

Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=parE:Gene&oldid=1479480"