uvrB:Gene: Difference between revisions
imported>Wikientrybot Refreshing information from GenBank record NC_000913 |
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PMID:6224549 | |||
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[[cgscmutation:9287|CGSC:9287]] | [[cgscmutation:9287|CGSC:9287]] | ||
Revision as of 17:40, 24 October 2011
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Interactions | Genetic Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
uvrB |
|---|---|
| Mnemonic |
UV resistant |
| Synonyms | |
| edit table |
Notes
Location(s) and DNA Sequence
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
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MG1655 |
17.52 minutes |
MG1655: 812749..814770 |
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NC_012967: 806152..808173 |
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NC_012759: 715717..717738 |
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W3110 |
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W3110: 813948..815969 |
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DH10B: 866677..868698 |
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| edit table |
Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
|
Coding Start (SO:0000323) |
812752 |
Edman degradation |
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| edit table |
Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
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ΔuvrB (Keio:JW0762) |
deletion |
deletion |
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uvrBYY95AA |
YY95AA |
Defective in DNA-unwinding activity |
seeded from UniProt:P0A8F8 | ||||
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uvrBY101A |
Y101A |
Defective in DNA-unwinding activity; when associated with A-108 |
seeded from UniProt:P0A8F8 | ||||
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uvrBF108A |
F108A |
Defective in DNA-unwinding activity; when associated with A-101 |
seeded from UniProt:P0A8F8 | ||||
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uvrB45 |
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uvrB16 |
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uvrB5 |
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uvrB27 |
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uvrB29 |
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uvrB30 |
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uvrB501 |
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uvrB151 |
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uvrB153 |
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uvrB230 |
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ΔuvrB751::kan |
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| edit table |
Notes
Genetic Interactions
| Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
|---|---|---|---|---|---|---|
| edit table |
Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
JW0762 |
Plasmid clone |
Status:Clone OK Primer 1:GCCAGTAAACCGTTCAAACTGAA Primer 2:CCCGATGCCGCGATAAACAGCTC | |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Linked marker |
est. P1 cotransduction: 26% [9] | ||
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zbh-29::Tn10 |
Linked marker |
est. P1 cotransduction: 75% [9] | |
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ Arikan, E et al. (1986) Sequences of the E. coli uvrB gene and protein. Nucleic Acids Res. 14 2637-50 PubMed
- ↑ 4.0 4.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
- ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
- ↑ Drapeau, GR et al. (1983) Unusual properties of a new division mutant of Escherichia coli. Can. J. Microbiol. 29 694-9 PubMed
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ 8.0 8.1 8.2 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
- ↑ 9.0 9.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).